Mercurial > repos > qfab > package_uclust_1_2_22q
changeset 0:c0295ba21771 draft default tip
Uploaded
| author | qfab |
|---|---|
| date | Thu, 29 May 2014 20:53:16 -0400 |
| parents | |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 63 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu May 29 20:53:16 2014 -0400 @@ -0,0 +1,63 @@ +<?xml version='1.0'?> + <tool_dependency> + <package name="uclust" version="1.22.2"> + <install version="1.0"> + <actions_group> + <!-- Download the binaries for uclust compatible with 64-bit OSX. --> + <actions os="darwin" architecture="x86_64"> + <action type="download_by_url">http://www.drive5.com/uclust/uclustq1.2.22_i86darwin64</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="shell_command">mv $INSTALL_DIR/uclustq1.2.22_i86darwin64 $INSTALL_DIR/uclust</action> + </actions> + <!-- Download the binaries for uclust compatible with 32-bit OSX. --> + <actions os="darwin" architecture="i386"> + <action type="download_by_url">http://www.drive5.com/uclust/uclustq1.2.22_i86darwin32</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="shell_command">mv $INSTALL_DIR/uclustq1.2.22_i86darwin32 $INSTALL_DIR/uclust</action> + </actions> + <!-- Download the binaries for uclust compatible with 64-bit Linux. --> + <actions os="linux" architecture="x86_64"> + <action type="download_by_url">http://www.drive5.com/uclust/uclustq1.2.22_i86linux64</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="shell_command">mv $INSTALL_DIR/uclustq1.2.22_i86linux64 $INSTALL_DIR/uclust</action> + </actions> + <!-- Download the binaries for uclust compatible with 32-bit Linux. --> + <actions os="linux" architecture="i386"> + <action type="download_by_url">http://www.drive5.com/uclust/uclustq1.2.22_i86linux32</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="shell_command">mv $INSTALL_DIR/uclustq1.2.22_i86linux32 $INSTALL_DIR/uclust</action> + </actions> + <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> + <actions> + <action type="shell_command">echo ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported.</action> + <action type="shell_command">echo Your machine details (the output from 'uname' and 'arch'):</action> + <action type="shell_command">uname</action> + <action type="shell_command">arch</action> + <action type="shell_command">echo Please report this via support@qfab.org - thank you!</action> + <action type="shell_command">false</action> + <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> + </actions> + <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> + <action type="shell_command">chmod ugo+x $INSTALL_DIR/uclust</action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions_group> + </install> + <readme> + Downloads the precompiled 32bit Linux, 64bit Linux, or Mac 64-bit OS X mothur binaries, which is faster than performing a local compliation, avoids any issues with build dependencies, and is more reproducible between installations as there is no variability from the compiler or library versions. + </readme> + </package> + </tool_dependency>