comparison test-data/F3D1.log @ 0:ec62f17fcfe6 draft default tip

"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/pear_stats commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e"

0:ec62f17fcfe6

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PEAR v0.9.10 [May 30, 2016]

Citation - PEAR: a fast and accurate Illumina Paired-End reAd mergeR
Zhang et al (2014) Bioinformatics 30(5): 614-620 | doi:10.1093/bioinformatics/btt593

Forward reads file.................: /mnt/galaxy/files/011/dataset_11546.dat
Reverse reads file.................: /mnt/galaxy/files/011/dataset_11547.dat
PHRED..............................: 33
Using empirical frequencies........: NO
Statistical method.................: OES
Maximum assembly length............: 999999
Minimum assembly length............: 50
p-value............................: 0.010000
Quality score threshold (trimming).: 0
Minimum read size after trimming...: 1
Maximal ratio of uncalled bases....: 1.000000
Minimum overlap....................: 10
Scoring method.....................: Scaled score
Threads............................: 2

Allocating memory..................: 200,000,000 bytes
Assemblying reads: 0%
Assemblying reads: 100%

Assembled reads ...................: 89 / 97 (91.753%)
Discarded reads ...................: 0 / 97 (0.000%)
Not assembled reads ...............: 8 / 97 (8.247%)
Assembled reads file...............: pear.assembled.fastq
Discarded reads file...............: pear.discarded.fastq
Unassembled forward reads file.....: pear.unassembled.forward.fastq
Unassembled reverse reads file.....: pear.unassembled.reverse.fastq