# HG changeset patch # User qfabrepo # Date 1600071223 0 # Node ID af6d9ad14a0fe88b4cfb84de98d9f993dd2d9e98 "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_net commit 8bd68662b72404f6291e9628327dcb109b5fa55e" diff -r 000000000000 -r af6d9ad14a0f phyloseq_net.r --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/phyloseq_net.r Mon Sep 14 08:13:43 2020 +0000 @@ -0,0 +1,147 @@ +library('getopt') +library('data.table') +suppressPackageStartupMessages(library('phyloseq')) +suppressPackageStartupMessages(library('DESeq2')) + +Sys.setenv("DISPLAY"=":1") + +options(warn= -1) +option_specification = matrix(c( + 'infile','i',2,'character', + 'metafile','m',2,'character', + 'biom','b',2,'character', + 'obsfile','o',2,'character', + 'norm','n',2,'logical', + 'xcolumn','x',2,'numeric', + 'lcolumn','l',2,'numeric', + 'outdir','d',2,'character', + 'htmlfile','h',2,'character' +),byrow=TRUE,ncol=4); + + +options <- getopt(option_specification) +options(bitmapType="cairo") + +matrix.format<-function(x) { + m<-as.matrix(x[,-1]) + rownames(m)<-x[,1] + m +} + + +gm_mean = function(x, na.rm=TRUE){ exp(sum(log(x[x > 0]), na.rm=na.rm) / length(x))} + + +tax_col_norm <- c("Kingdom","Phylum","Class","Order","Family","Genus","Species") +tax_col_extra <- c("None","Kingdom","Phylum","Class","Order","Family","Genus","Species") + +tax_col_norm_otu <- c("OTUID","Kingdom","Phylum","Class","Order","Family","Genus","Species") +tax_col_extra_otu <- c("OTUID","None","Kingdom","Phylum","Class","Order","Family","Genus","Species") + +if (!is.null(options$outdir)) { + # Create the directory + dir.create(options$outdir,FALSE) +} + +is.biom<-options$biom + + +pdffile <- gsub("[ ]+", "", paste(options$outdir,"/pdffile.pdf")) +pngfile_net <- gsub("[ ]+", "", paste(options$outdir,"/net.png")) +htmlfile <- gsub("[ ]+", "", paste(options$htmlfile)) + +if(is.biom=="set_biom"){ + +galaxy_biom <- import_biom(options$infile) +galaxy_map <- import_qiime_sample_data(options$metafile) + +number.of.tax.rank<-length(colnames(tax_table(galaxy_biom))) + + if(number.of.tax.rank == 7){ + colnames(tax_table(galaxy_biom)) <- tax_col_norm + } else { + colnames(tax_table(galaxy_biom)) <- tax_col_extra + } + +physeq_galaxy <- merge_phyloseq(galaxy_biom,galaxy_map) + +} else { + +count.table<-read.table(options$infile,header=T,sep="\t",comment.char="",stringsAsFactors = F) +meta.table<-read.table(options$metafile,header=T,sep="\t",comment.char="",stringsAsFactors = F) +tax.table<-read.table(options$obsfile,header=T,sep="\t",comment.char="",stringsAsFactors = F) + + +colnames(count.table)<-gsub("^X","",colnames(count.table)) +colnames(meta.table)<-gsub("^X.","",colnames(meta.table)) +colnames(tax.table)<-gsub("^X.","",colnames(tax.table)) + +count.table.formatted<-matrix.format(count.table) +OTU<-otu_table(count.table.formatted,taxa_are_rows = TRUE) + +tax.table.new<-as.data.frame(cbind(tax.table[,1],t(as.data.table(strsplit(tax.table[,2],";"))))) + + +if(length(colnames(tax.table.new)) != length(tax_col_extra_otu)){ +colnames(tax.table.new)<-tax_col_norm_otu +}else{ +colnames(tax.table.new)<-tax_col_extra_otu +} + +tax.table.formatted<-matrix.format(tax.table.new) + +TAX<-tax_table(tax.table.formatted) + +physeq_galaxy <- phyloseq(OTU, TAX) + + +galaxy_map<-meta.table + +rownames(galaxy_map)<-meta.table[,1] + +sampledata<-sample_data(as.data.frame(galaxy_map,row.names=sample_names(galaxy_map),stringsAsFactos=F)) + +sample_data(physeq_galaxy)<-sampledata + +} + + +x.selectedColumn<-colnames(galaxy_map)[options$xcolumn] +l.selectedColumn<-colnames(galaxy_map)[options$lcolumn] + +### normalisation +if(is.null(options$norm) || options$norm =="false"){ +suppressMessages(raw.count.deseq2.obj<-phyloseq_to_deseq2(physeq_galaxy,as.formula(paste('~',x.selectedColumn,sep="")))) +geoMeans = apply(counts(raw.count.deseq2.obj), 1, gm_mean) + +deseq.obj = estimateSizeFactors(raw.count.deseq2.obj, geoMeans = geoMeans) +deseq.obj.norm<-otu_table(as.matrix(counts(deseq.obj,normalized=T)),taxa_are_rows=TRUE) + +otu_table(physeq_galaxy)<-deseq.obj.norm +} + + +# Produce PDF file + +pdf(pdffile); +plot_net(physeq_galaxy,point_label=x.selectedColumn,color=l.selectedColumn) +garbage<-dev.off(); + +#Cairo(pngfile_net, type="png", bg="white",pointsize=12,dpi=100,units="in",width=6,height=6) +png(pngfile_net,units="in",width=6,height=6,pointsize=12,res=100,bg="white") +plot_net(physeq_galaxy,point_label=x.selectedColumn,color=l.selectedColumn) +garbage<-dev.off() + +# Produce the HTML file +htmlfile_handle <- file(htmlfile) +html_output = c('', + '', + '', + '', + '', + '
', + '', + '
', + ''); +writeLines(html_output, htmlfile_handle); +close(htmlfile_handle); diff -r 000000000000 -r af6d9ad14a0f phyloseq_net.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/phyloseq_net.xml Mon Sep 14 08:13:43 2020 +0000 @@ -0,0 +1,125 @@ + diff -r 000000000000 -r af6d9ad14a0f test-data/GP.biom --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/GP.biom Mon Sep 14 08:13:43 2020 +0000 @@ -0,0 +1,1 @@ +{"id": "None","format": "Biological Observation Matrix 1.0.0","format_url": "http://biom-format.org","matrix_type": "sparse","generated_by": "BIOM-Format 2.1.5","date": "2020-04-06T10:47:50.459145","type": "OTU table","matrix_element_type": "float","shape": [3104, 20],"data": 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af6d9ad14a0f test-data/observation.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/observation.txt Mon Sep 14 08:13:43 2020 +0000 @@ -0,0 +1,3359 @@ +OTUID taxonomy +775126 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +228502 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcus; s__ +314713 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcus; s__ +314425 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcus; s__ +316122 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +432015 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +4374047 k__Bacteria; p__Actinobacteria; c__Coriobacteriia; o__Coriobacteriales; f__Coriobacteriaceae; g__Adlercreutzia; s__ +344726 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +1078157 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c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Oscillospira; s__ +192475 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +3392846 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +199092 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +776532 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +274868 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +187214 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +629480 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +725517 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +4056572 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +195127 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +193974 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +193106 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +190916 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +204003 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +205969 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +276219 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +266192 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +259118 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +781109 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +724040 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +469106 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Actinomycetales; f__Actinomycetaceae; g__Actinomyces; s__ +276768 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +198575 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +659674 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__[Ruminococcus]; s__gnavus +802379 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__[Ruminococcus]; s__gnavus +303076 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__[Ruminococcus]; s__gnavus +350392 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +258165 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +309665 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +890990 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__ +247911 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +337808 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +336074 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +668043 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +714151 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +130057 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +2978254 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcus; s__ +331831 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcus; s__ +260193 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +752947 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__[Ruminococcus]; s__gnavus +777182 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__[Ruminococcus]; s__gnavus +338097 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__[Ruminococcus]; s__gnavus +331708 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +725656 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +227787 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +264176 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__; s__ +127058 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ +298723 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +708060 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Coprococcus; s__ +214309 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ +4328475 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ +3887771 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ +1630012 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ +2883980 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ +4457774 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ +4449917 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ +2379744 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ +4456153 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ +4030945 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ +4370829 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ +4445339 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ +122907 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ +127840 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ +4320995 k__Bacteria; p__Cyanobacteria; c__Chloroplast; o__Streptophyta; f__; g__; s__ +194662 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +268196 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +339227 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__; s__ +330003 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__reuteri +195928 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +336570 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +262313 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +668101 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +749099 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +196110 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +273135 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +182537 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +185125 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Oscillospira; s__ +190272 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +183431 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +133341 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +560790 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +261277 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +354938 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +4408429 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptococcaceae; g__rc4-4; s__ +176118 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Oscillospira; s__ +326625 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +308356 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +302536 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +178779 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +319622 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; 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f__Lachnospiraceae; g__; s__ +266841 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Oscillospira; s__ +265976 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +308598 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ovatus +194848 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +187078 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +271944 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +229954 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +628445 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +763206 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +803937 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +162949 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +799694 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +533785 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__ +2096434 k__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__ +273500 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +318147 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +2692803 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +205274 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +190242 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcus; s__ +271830 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +268581 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +269340 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +261957 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +719173 k__Bacteria; p__Cyanobacteria; c__Chloroplast; o__Streptophyta; f__; g__; s__ +346185 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +162837 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__; s__ +873545 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__haemolyticus +263544 k__Bacteria; p__Verrucomicrobia; c__Verrucomicrobiae; o__Verrucomicrobiales; f__Verrucomicrobiaceae; g__Akkermansia; s__muciniphila +367519 k__Bacteria; p__Verrucomicrobia; c__Verrucomicrobiae; o__Verrucomicrobiales; f__Verrucomicrobiaceae; 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o__Bacillales; f__Bacillaceae; g__; s__ +864775 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__; s__ +1064233 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__; s__ +891458 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__; s__ +229911 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +315496 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +261114 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +1044577 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__ +1077450 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__ +129394 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +541008 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +2688059 k__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__pylori +4348760 k__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__pylori +4317179 k__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__pylori +4381056 k__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__pylori +4306826 k__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__pylori +68375 k__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__pylori +4484885 k__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__pylori +812106 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__; s__ +311204 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Oscillospira; s__ +264846 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +267767 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +222902 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Moraxellaceae; g__Acinetobacter; s__ +4338653 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacteriales; f__Enterobacteriaceae; g__; s__ +4483422 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacteriales; f__Enterobacteriaceae; g__; s__ +2005293 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacteriales; f__Enterobacteriaceae; g__; s__ +302662 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacteriales; f__Enterobacteriaceae; g__; s__ +290391 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacteriales; f__Enterobacteriaceae; g__; s__ +293257 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacteriales; f__Enterobacteriaceae; g__; s__ +288658 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacteriales; f__Enterobacteriaceae; g__; s__ +752067 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacteriales; f__Enterobacteriaceae; g__; s__ +4485644 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacteriales; f__Enterobacteriaceae; g__; s__ +2218287 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +199403 k__Bacteria; p__Actinobacteria; c__Coriobacteriia; o__Coriobacteriales; f__Coriobacteriaceae; g__Adlercreutzia; s__ +265465 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +264734 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +271449 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p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +186085 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +181133 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +196497 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +750656 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +759976 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +702187 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +752171 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +608599 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +739969 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +305750 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +346618 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +261202 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +308734 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +2645492 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcus; s__ +234784 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcus; s__ +2986237 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +2018186 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +631752 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +734244 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +263138 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__[Ruminococcus]; s__gnavus +216182 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +3002428 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__; s__ +266415 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +2525252 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus; s__ +498769 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Enterococcaceae; g__Enterococcus; s__ +732082 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Coprococcus; s__ +184318 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +694178 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +691087 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +4299792 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__; s__ +775635 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g__Oscillospira; s__ +4370222 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__; s__ +3113753 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__fragilis +271476 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__[Ruminococcus]; s__gnavus +356226 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +218562 k__Bacteria; p__Cyanobacteria; c__Chloroplast; o__Streptophyta; f__; g__; s__ +576091 k__Bacteria; p__Cyanobacteria; c__Chloroplast; o__Streptophyta; f__; g__; s__ +627122 k__Bacteria; p__Cyanobacteria; c__Chloroplast; o__Streptophyta; f__; g__; s__ +275657 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +187233 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +326816 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +260527 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k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +738864 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +651750 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +674084 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +343859 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +343853 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +214120 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +228182 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +272768 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +1112425 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Christensenellaceae; g__; s__ +191951 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +320841 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__acidifaciens +320844 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__[Ruminococcus]; s__gnavus +274639 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +714681 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +657595 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +790513 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +765324 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +659748 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +711156 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +675604 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +762540 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +708170 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +268410 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__; s__ +189454 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +176099 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +176154 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +258390 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +227936 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +612660 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +684059 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +794855 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +331965 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +301363 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +273657 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptococcaceae; g__rc4-4; s__ +738348 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +669538 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +671702 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +717038 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +753540 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +633570 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +824614 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +135831 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +655840 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +259281 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Coprococcus; s__ +265503 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__[Ruminococcus]; s__gnavus +757394 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +189778 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +4319026 k__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacteriales; f__Enterobacteriaceae; g__; s__ +350256 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Oscillospira; s__ +258283 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +262388 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +2378346 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ovatus +2091374 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ovatus +4309629 k__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Rhodobacter; s__sphaeroides +803669 k__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Rhodobacter; s__sphaeroides +233812 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +233702 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +274843 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +321607 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +329836 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +328789 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +350693 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +697688 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +768081 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ 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c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +186594 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +297768 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +336276 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +212367 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +333695 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +276158 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +727945 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Eubacteriaceae; g__Anaerofustis; s__ +183893 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +261416 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +353026 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +458154 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptococcaceae; g__rc4-4; s__ +442629 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptococcaceae; g__rc4-4; s__ +437017 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptococcaceae; g__rc4-4; s__ +277189 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptococcaceae; g__rc4-4; s__ +407617 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptococcaceae; g__rc4-4; s__ +97459 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptococcaceae; g__rc4-4; s__ +342680 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptococcaceae; g__rc4-4; s__ +165428 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +616353 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +791839 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +193588 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +409439 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__; s__ +266349 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +1137271 k__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__; s__ +187790 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__; s__ +1109321 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__vaginalis +401344 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__vaginalis +132205 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__vaginalis +162780 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__vaginalis +269178 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +190273 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +195982 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcus; s__ +215897 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +266061 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +340162 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +3675947 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +4446052 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +269382 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +273170 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +693043 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +212823 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; 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o__Clostridiales; f__; g__; s__ +4383135 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +726272 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__[Mogibacteriaceae]; g__; s__ +656914 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__[Mogibacteriaceae]; g__; s__ +2808639 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +214471 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +183198 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Roseburia; s__ +191067 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +196733 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +276985 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Oscillospira; s__ +641065 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +643791 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +2964788 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +231806 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +352826 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +4457429 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +134203 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +419564 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +2483439 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +270727 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +271844 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +267989 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +264095 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +268836 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +277039 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +263374 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +275991 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +264661 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +273150 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +276054 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +267835 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +294918 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +296502 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +304422 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +183197 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +270175 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +277533 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +353765 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +296582 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +300014 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +1034679 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +853641 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +998065 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +1103930 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +856717 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +1058647 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +954669 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +879516 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +1030585 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +1055235 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +935998 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +903570 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +986436 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +890649 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +1048711 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +1063119 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +944930 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +928146 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +1038158 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +1046220 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +906682 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +904274 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +859595 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +1007533 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +859932 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +959771 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +1010293 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +1015491 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +1061327 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +262166 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +314036 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +191493 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__; s__ +229676 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcus; s__ +308025 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcus; s__ +232681 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +793598 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +626489 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +629757 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +770759 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +109133 k__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__pylori +331486 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +688489 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +759239 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +232527 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +215134 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +214759 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +208836 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +205242 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +211936 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +252872 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +242403 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +250233 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +228726 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +228824 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +235218 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +234604 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +229015 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +234379 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +229987 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +237568 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +244290 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +247154 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +240085 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +255791 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +250949 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +253424 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +246392 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +255071 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +249515 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +249004 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +241245 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +251917 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +239078 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +243641 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +233263 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +236866 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +248198 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +242003 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +233464 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +235535 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +227630 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +234294 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +230044 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +260009 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +267122 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +260267 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +270783 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +260841 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +274715 k__Bacteria; 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o__Clostridiales; f__Ruminococcaceae; g__Oscillospira; s__ +624023 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +731475 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +162005 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Oscillospira; s__ +344165 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__reuteri +213147 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +741302 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +175416 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +191841 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +229749 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +326923 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +260410 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ +260720 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Oscillospira; s__ +624351 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Oscillospira; s__ +625996 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +787921 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__; s__ +306469 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +318231 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +263570 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Oscillospira; s__ +611517 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Oscillospira; s__ +732067 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Oscillospira; s__ +684456 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +796711 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +204158 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +185974 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +2916985 k__Bacteria; p__Tenericutes; c__Mollicutes; o__RF39; f__; g__; s__ +587097 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +511792 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +577581 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +510131 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +564816 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +591086 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +573872 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +539527 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +582511 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +556199 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +565510 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +570971 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +534772 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +509436 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +565059 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +574595 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +557583 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +576654 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +563131 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +586248 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +563987 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +550555 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +541677 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +572252 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +586160 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +551304 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +587524 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +566491 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +560061 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +579142 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +511768 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +571739 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +544813 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +584349 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +570396 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +581378 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +565140 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +335855 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__; s__ +4412353 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__ +328212 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__; s__ +4457231 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +234961 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +232148 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +3396837 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +136776 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +276345 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +302193 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +259937 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +276647 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +291220 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +270006 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +264995 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +267387 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +183053 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +792516 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +836621 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Oscillospira; s__ +4364236 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcus; s__ +198262 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +272749 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +153798 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +320511 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +4447949 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ovatus +174699 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +309054 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +265119 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +135956 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +173939 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +266187 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +342014 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +233163 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +270519 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Oscillospira; s__ +320123 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +179488 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +265522 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +217149 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +335892 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +337450 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +328959 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +328610 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +308566 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +777592 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +1147415 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +263899 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +342368 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__; s__ +342787 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +166592 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +180283 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +657842 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +264909 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +262957 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +165845 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +348200 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +210001 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +259173 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__; s__ +313878 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +277583 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +261802 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c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +271500 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +263500 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +262124 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +179035 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +320371 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +186164 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +782890 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +779243 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +790455 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +212750 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +190681 k__Bacteria; p__Verrucomicrobia; c__Verrucomicrobiae; o__Verrucomicrobiales; 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p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +230041 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__S24-7; g__; s__ +320224 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcus; s__ +305884 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcus; s__ +705799 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Ruminococcus; s__ +4397402 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +267752 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +271763 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +265712 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +4389415 k__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__ +4350739 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Oscillospira; s__ +326055 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +273118 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +315998 k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__ +188536 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +775831 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +174338 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +174339 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +347908 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ +271439 k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__ +231542 k__Bacteria; p__Firmicutes; c__Clostridia; 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