changeset 1:680917d9d415 draft

"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/symmetric_plot commit 92c83b79fb5a8c0db6b049f10c4ffd8eb8b10748"
author qfabrepo
date Mon, 14 Sep 2020 06:20:40 +0000
parents 0cac08094b86
children 91fb94d203df
files symmetric_plot.xml
diffstat 1 files changed, 1 insertions(+), 14 deletions(-) [+]
line wrap: on
line diff
--- a/symmetric_plot.xml	Mon Sep 14 06:04:44 2020 +0000
+++ b/symmetric_plot.xml	Mon Sep 14 06:20:40 2020 +0000
@@ -7,15 +7,6 @@
 		  <requirement type="package" version="1.20.0">r-getopt</requirement>
 		  <requirement type="package" version="0.6.3">r-tidyr</requirement>
 		  <requirement type="package" version="9.18">ghostscript</requirement>
-<tool id="symmetricPlot2" name="Symmetric Plot" version="1.0.1" hidden="false" force_history_refresh="True">>
-  <description>Symmetric Plot</description>
-  <requirements>
-	  <requirement type="package" version="3.4.1">r-base</requirement>
-          <requirement type="package" version="1.22.3">bioconductor-phyloseq</requirement>
-	  <requirement type="package" version="1.18.1">bioconductor-deseq2</requirement>
-          <requirement type="package" version="1.20.0">r-getopt</requirement>
-	  <requirement type="package" version="0.6.3">r-tidyr</requirement>
-          <requirement type="package" version="9.18">ghostscript</requirement>
   </requirements>
   <version_command><![CDATA[
 	   echo $(R --version | grep version | grep -v GNU)", phyloseq version" $(R --vanilla --slave -e "library(phyloseq); cat(sessionInfo()\$otherPkgs\$phyloseq\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
@@ -80,6 +71,7 @@
 		<output name="htmlfile" ftype="html" file="SymmetricPlot.html"/></test>
    </tests>
   <help>
+
 .. class:: infomark
 
 **TIP:** The input data should be in tabular format.
@@ -101,9 +93,6 @@
 .. _DESeq2 : https://bioconductor.org/packages/release/bioc/html/DESeq2.html
 .. _ggplot2: https://ggplot2.tidyverse.org/
 
-=======
- This program uses an R package called DESeq2 and ggplot2 to create a symmetric bar plot.
-  
 -----
 
 **Syntax**
@@ -121,7 +110,6 @@
 Resources
 =========
 
-=======
 **Wrapper Author**
 
 QFAB Bioinformatics (support@qfab.org)
@@ -131,5 +119,4 @@
   	<citation type="doi">10.18129/B9.bioc.DESeq2</citation>
 	<citation type="doi">10.1007/978-3-319-24277-4</citation>
   </citations>
-=======
 </tool>