Mercurial > repos > qfabrepo > metadegalaxy_symmetric_plot
changeset 1:680917d9d415 draft
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/symmetric_plot commit 92c83b79fb5a8c0db6b049f10c4ffd8eb8b10748"
| author | qfabrepo |
|---|---|
| date | Mon, 14 Sep 2020 06:20:40 +0000 |
| parents | 0cac08094b86 |
| children | 91fb94d203df |
| files | symmetric_plot.xml |
| diffstat | 1 files changed, 1 insertions(+), 14 deletions(-) [+] |
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--- a/symmetric_plot.xml Mon Sep 14 06:04:44 2020 +0000 +++ b/symmetric_plot.xml Mon Sep 14 06:20:40 2020 +0000 @@ -7,15 +7,6 @@ <requirement type="package" version="1.20.0">r-getopt</requirement> <requirement type="package" version="0.6.3">r-tidyr</requirement> <requirement type="package" version="9.18">ghostscript</requirement> -<tool id="symmetricPlot2" name="Symmetric Plot" version="1.0.1" hidden="false" force_history_refresh="True">> - <description>Symmetric Plot</description> - <requirements> - <requirement type="package" version="3.4.1">r-base</requirement> - <requirement type="package" version="1.22.3">bioconductor-phyloseq</requirement> - <requirement type="package" version="1.18.1">bioconductor-deseq2</requirement> - <requirement type="package" version="1.20.0">r-getopt</requirement> - <requirement type="package" version="0.6.3">r-tidyr</requirement> - <requirement type="package" version="9.18">ghostscript</requirement> </requirements> <version_command><![CDATA[ echo $(R --version | grep version | grep -v GNU)", phyloseq version" $(R --vanilla --slave -e "library(phyloseq); cat(sessionInfo()\$otherPkgs\$phyloseq\$Version)" 2> /dev/null | grep -v -i "WARNING: ") @@ -80,6 +71,7 @@ <output name="htmlfile" ftype="html" file="SymmetricPlot.html"/></test> </tests> <help> + .. class:: infomark **TIP:** The input data should be in tabular format. @@ -101,9 +93,6 @@ .. _DESeq2 : https://bioconductor.org/packages/release/bioc/html/DESeq2.html .. _ggplot2: https://ggplot2.tidyverse.org/ -======= - This program uses an R package called DESeq2 and ggplot2 to create a symmetric bar plot. - ----- **Syntax** @@ -121,7 +110,6 @@ Resources ========= -======= **Wrapper Author** QFAB Bioinformatics (support@qfab.org) @@ -131,5 +119,4 @@ <citation type="doi">10.18129/B9.bioc.DESeq2</citation> <citation type="doi">10.1007/978-3-319-24277-4</citation> </citations> -======= </tool>