changeset 2:d28ee835a561 draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README_cut_fr.txt	Wed Dec 16 08:46:37 2015 -0500
@@ -0,0 +1,69 @@
+########################################
+
+#####		french cut
+
+########################################
+##---------- Licence
+#### FreeSoftware on GNU licence 
+ '''   <cut_fr.py & cut_fr.xml are scripts allwing more convenient use of cut in galaxy environment>
+    Copyright (C) <2015>  <Lannes Romain>
+
+    This program is free software: you can redistribute it and/or modify
+    it under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    This program is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+    GNU General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with this program.  If not, see <http://www.gnu.org/licenses/>.'''
+
+##########################################
+#------- program needed
+
+need python 3
+and python 3 library:
+	import os 
+	import argparse
+	import sys
+
+###########################################
+########------------ Install
+
+copy cut_fr.xml and cut_fr.py in galaxy/tools/a_directory_of_your_choice/
+not directly on tools
+
+add in 
+config/tool_conf.xml
+
+<tool file="a_directory_of_your_choice/cut_fr.xml" />
+
+in the section of your choice
+
+############################################
+
+input = 
+		-tsv
+		-String ( "c1,c2,c3")
+		-type_cut default = Exclude
+		-extend_print default = False
+
+output =
+	 input.tsv less column 1,2,3
+
+
+input = 
+		-tsv
+		-String ( "c1,c2,c3")
+		-type_cut default = ExInclude
+		-extend_print default = False
+
+output =
+	 only column 1,2,3
+
+
+-extend_print default = False an option allowing the sdtout to be more consistant.
+