Mercurial > repos > rakesh4osdd > asist

annotate tool_asist.sh @ 8:6a0a21d3fcea draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded xml
author rakesh4osdd
date Wed, 30 Jun 2021 07:02:48 +0000
parents c1a77856070c
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
c1a77856070c "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f5b374bef15145c893ffdd3a7d2f2978d8052184-dirty"
rakesh4osdd
parents:
diff changeset
1 #!/bin/bash
c1a77856070c "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f5b374bef15145c893ffdd3a7d2f2978d8052184-dirty"
rakesh4osdd
parents:
diff changeset
2
c1a77856070c "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f5b374bef15145c893ffdd3a7d2f2978d8052184-dirty"
rakesh4osdd
parents:
diff changeset
3 planemo tool_init --id 'asist' --name 'ASIST' --version 1.0.1 \
c1a77856070c "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f5b374bef15145c893ffdd3a7d2f2978d8052184-dirty"
rakesh4osdd
parents:
diff changeset
4 --description 'Antimicrobial Susceptibility standards based phenotypes' \
c1a77856070c "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f5b374bef15145c893ffdd3a7d2f2978d8052184-dirty"
rakesh4osdd
parents:
diff changeset
5 --requirement 'pandas' \
c1a77856070c "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f5b374bef15145c893ffdd3a7d2f2978d8052184-dirty"
rakesh4osdd
parents:
diff changeset
6 --example_command "\"${__tool_directory__}/asist_dynamic.py\" 'asist_input.csv' 'asist_output.csv'" \
c1a77856070c "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f5b374bef15145c893ffdd3a7d2f2978d8052184-dirty"
rakesh4osdd
parents:
diff changeset
7 --example_input test-data/asist_input.csv \
c1a77856070c "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f5b374bef15145c893ffdd3a7d2f2978d8052184-dirty"
rakesh4osdd
parents:
diff changeset
8 --example_output test-data/asist_output.csv \
c1a77856070c "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f5b374bef15145c893ffdd3a7d2f2978d8052184-dirty"
rakesh4osdd
parents:
diff changeset
9 --test_case \
c1a77856070c "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f5b374bef15145c893ffdd3a7d2f2978d8052184-dirty"
rakesh4osdd
parents:
diff changeset
10 --version_command 'python -c "import pandas; print(pandas.__version__)"' \
c1a77856070c "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f5b374bef15145c893ffdd3a7d2f2978d8052184-dirty"
rakesh4osdd
parents:
diff changeset
11 --doi 'https://ab-openlab.csir.res.in/asist'
c1a77856070c "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f5b374bef15145c893ffdd3a7d2f2978d8052184-dirty"
rakesh4osdd
parents:
diff changeset
12
c1a77856070c "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f5b374bef15145c893ffdd3a7d2f2978d8052184-dirty"
rakesh4osdd
parents:
diff changeset
13 planemo lint asist.xml