Mercurial > repos > rakesh4osdd > clsi_profile

annotate tool.sh @ 2:306236ec0511 draft

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author rakesh4osdd
date Fri, 11 Jun 2021 13:20:08 +0000
parents 62226cd1acb5
children 2a5861818faf
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62226cd1acb5 "planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
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1 #!/bin/bash
62226cd1acb5 "planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
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62226cd1acb5 "planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
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3 planemo tool_init --id 'clsi_profile' --name 'CLSI Profile' \
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4 --description 'MIC profile using CLSI MIC breakpoints' \
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5 --requirement 'python' \
62226cd1acb5 "planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
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6 --example_command "clsi_profile_type2.py 'input.csv' 'clsi.csv' 'output.csv'" \
62226cd1acb5 "planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
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7 --example_input input.csv \
62226cd1acb5 "planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
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8 --example_input clsi.csv \
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9 --example_output output.csv \
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10 --test_case \
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11 # --version_command 'python3 -V' \
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12 # --help_from_command '' \
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13 # --doi ''
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14
62226cd1acb5 "planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
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15 planemo lint