Mercurial > repos > rakesh4osdd > clsi_profile
annotate tool.sh @ 5:3c27e5c2a8e9 draft
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit d4b81c15919b4b87d215eaf1b792c8f251665647"
author | rakesh4osdd |
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date | Tue, 29 Jun 2021 12:58:49 +0000 |
parents | 2a5861818faf |
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62226cd1acb5
"planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
rakesh4osdd
parents:
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1 #!/bin/bash |
62226cd1acb5
"planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
rakesh4osdd
parents:
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2 |
62226cd1acb5
"planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
rakesh4osdd
parents:
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3 planemo tool_init --id 'clsi_profile' --name 'CLSI Profile' \ |
62226cd1acb5
"planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
rakesh4osdd
parents:
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4 --description 'MIC profile using CLSI MIC breakpoints' \ |
62226cd1acb5
"planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
rakesh4osdd
parents:
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5 --requirement 'python' \ |
62226cd1acb5
"planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
rakesh4osdd
parents:
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6 --example_command "clsi_profile_type2.py 'input.csv' 'clsi.csv' 'output.csv'" \ |
4
2a5861818faf
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit 7169e85ac6d230af9309b0deacecd4dc61e0a915"
rakesh4osdd
parents:
0
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7 --example_input test-data/input.csv \ |
2a5861818faf
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit 7169e85ac6d230af9309b0deacecd4dc61e0a915"
rakesh4osdd
parents:
0
diff
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8 --example_input test-data/clsi.csv \ |
2a5861818faf
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit 7169e85ac6d230af9309b0deacecd4dc61e0a915"
rakesh4osdd
parents:
0
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9 --example_output test-data/output.csv \ |
0
62226cd1acb5
"planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
rakesh4osdd
parents:
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10 --test_case \ |
62226cd1acb5
"planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
rakesh4osdd
parents:
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11 # --version_command 'python3 -V' \ |
62226cd1acb5
"planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
rakesh4osdd
parents:
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12 # --help_from_command '' \ |
62226cd1acb5
"planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
rakesh4osdd
parents:
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13 # --doi '' |
62226cd1acb5
"planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
rakesh4osdd
parents:
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14 |
62226cd1acb5
"planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
rakesh4osdd
parents:
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15 planemo lint |