Mercurial > repos > rakesh4osdd > clsi_profile

annotate tool_asist.sh @ 3:683299422575 draft

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"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f085b88bf75f7b45ac3b0c4e1c39214c0ac0b67d"
author rakesh4osdd
date Tue, 29 Jun 2021 05:20:41 +0000
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683299422575 "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f085b88bf75f7b45ac3b0c4e1c39214c0ac0b67d"
rakesh4osdd
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1 #!/bin/bash
683299422575 "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f085b88bf75f7b45ac3b0c4e1c39214c0ac0b67d"
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683299422575 "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f085b88bf75f7b45ac3b0c4e1c39214c0ac0b67d"
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3 planemo tool_init --id 'asist' --name 'ASIST' --version 1.0.1 \
683299422575 "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f085b88bf75f7b45ac3b0c4e1c39214c0ac0b67d"
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4 --description 'Antimicrobial Susceptibility standards based phenotypes' \
683299422575 "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f085b88bf75f7b45ac3b0c4e1c39214c0ac0b67d"
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5 --requirement 'pandas' \
683299422575 "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f085b88bf75f7b45ac3b0c4e1c39214c0ac0b67d"
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6 --example_command "\"${__tool_directory__}/asist_dynamic.py\" 'asist_input.csv' 'asist_output.csv'" \
683299422575 "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f085b88bf75f7b45ac3b0c4e1c39214c0ac0b67d"
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7 --example_input test-data/asist_input.csv \
683299422575 "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f085b88bf75f7b45ac3b0c4e1c39214c0ac0b67d"
rakesh4osdd
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8 --example_output test-data/asist_output.csv \
683299422575 "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f085b88bf75f7b45ac3b0c4e1c39214c0ac0b67d"
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9 --test_case \
683299422575 "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f085b88bf75f7b45ac3b0c4e1c39214c0ac0b67d"
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10 --version_command 'python -c "import pandas; print(pandas.__version__)"' \
683299422575 "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f085b88bf75f7b45ac3b0c4e1c39214c0ac0b67d"
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11 --doi 'https://ab-openlab.csir.res.in/asist'
683299422575 "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f085b88bf75f7b45ac3b0c4e1c39214c0ac0b67d"
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12
683299422575 "planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f085b88bf75f7b45ac3b0c4e1c39214c0ac0b67d"
rakesh4osdd
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13 planemo lint asist.xml