Mercurial > repos > rakesh4osdd > clsi_profile
annotate tool.sh @ 11:7dcc0e93288b draft default tip
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f590c3b1d71a9b8f2030909fa488b4ac0c3caed8-dirty"
author | rakesh4osdd |
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date | Wed, 30 Jun 2021 07:13:29 +0000 |
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11
7dcc0e93288b
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f590c3b1d71a9b8f2030909fa488b4ac0c3caed8-dirty"
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1 #!/bin/bash |
7dcc0e93288b
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f590c3b1d71a9b8f2030909fa488b4ac0c3caed8-dirty"
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2 |
7dcc0e93288b
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f590c3b1d71a9b8f2030909fa488b4ac0c3caed8-dirty"
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3 planemo tool_init --id 'clsi_profile' --name 'CLSI Profile' \ |
7dcc0e93288b
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f590c3b1d71a9b8f2030909fa488b4ac0c3caed8-dirty"
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4 --description 'MIC profile using CLSI MIC breakpoints' \ |
7dcc0e93288b
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f590c3b1d71a9b8f2030909fa488b4ac0c3caed8-dirty"
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5 --requirement 'python' \ |
7dcc0e93288b
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f590c3b1d71a9b8f2030909fa488b4ac0c3caed8-dirty"
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6 --example_command "clsi_profile_type2.py 'input.csv' 'clsi.csv' 'output.csv'" \ |
7dcc0e93288b
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f590c3b1d71a9b8f2030909fa488b4ac0c3caed8-dirty"
rakesh4osdd
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7 --example_input test-data/input.csv \ |
7dcc0e93288b
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f590c3b1d71a9b8f2030909fa488b4ac0c3caed8-dirty"
rakesh4osdd
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8 --example_input test-data/clsi.csv \ |
7dcc0e93288b
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f590c3b1d71a9b8f2030909fa488b4ac0c3caed8-dirty"
rakesh4osdd
parents:
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9 --example_output test-data/output.csv \ |
7dcc0e93288b
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f590c3b1d71a9b8f2030909fa488b4ac0c3caed8-dirty"
rakesh4osdd
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10 --test_case \ |
7dcc0e93288b
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f590c3b1d71a9b8f2030909fa488b4ac0c3caed8-dirty"
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11 # --version_command 'python3 -V' \ |
7dcc0e93288b
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f590c3b1d71a9b8f2030909fa488b4ac0c3caed8-dirty"
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12 # --help_from_command '' \ |
7dcc0e93288b
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f590c3b1d71a9b8f2030909fa488b4ac0c3caed8-dirty"
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13 # --doi '' |
7dcc0e93288b
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f590c3b1d71a9b8f2030909fa488b4ac0c3caed8-dirty"
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14 |
7dcc0e93288b
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f590c3b1d71a9b8f2030909fa488b4ac0c3caed8-dirty"
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15 planemo lint |