Mercurial > repos > rakesh4osdd > clsi_profile

diff dump/clsi_profile.xml @ 0:62226cd1acb5 draft
"planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
author: rakesh4osdd
date: Fri, 11 Jun 2021 12:36:25 +0000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/dump/clsi_profile.xml	Fri Jun 11 12:36:25 2021 +0000
@@ -0,0 +1,36 @@
+<tool id="clsi_profile" name="CLSI Profile" version="0.1.0" python_template_version="3.5">
+    <description>MIC profile using CLSI MIC breakpoints</description>
+
+    <command detect_errors="exit_code"><![CDATA[
+        python '$__tool_directory__/clsi_profile.py' '$input1' '$input2' '$output1'
+    ]]></command>
+    <inputs>
+        <param type="data" name="input1" format="csv" />
+        <param type="data" name="input2" format="csv" />
+    </inputs>
+    <outputs>
+        <data name="output1" format="csv" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="input1" value="input.csv"/>
+            <param name="input2" value="clsi.csv"/>
+            <output name="output1" file="output.csv"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+        Examples Files:
+	    **CLSI MIC breakpoint file example:** ::
+
+	    Antibiotics,Susceptible,Resistant,Intermediate
+	    Amikacin,≤ 16,≥ 64,32
+	    Tobramycin,≤ 4,≥ 16,8
+	    Gentamicin,≤ 4,≥ 16,8
+
+	    **AST MIC value file example:** ::
+            Strain name,Antibiotics,MIC
+	    Strain1,Amikacin,≤ 16
+	    Strain2,Tobramycin,≤ 4
+	    Strain3,Gentamicin,≤ 4
+    ]]></help>
+</tool>