Mercurial > repos > rakesh4osdd > clsi_profile
changeset 4:2a5861818faf draft
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit 7169e85ac6d230af9309b0deacecd4dc61e0a915"
| author | rakesh4osdd |
|---|---|
| date | Tue, 29 Jun 2021 12:15:06 +0000 |
| parents | 683299422575 |
| children | 3c27e5c2a8e9 |
| files | README.md asist_dynamic.ipynb asist_dynamic.py clsi_profile.py clsi_profile.xml clsi_profile_type2.py clsi_profile_type2_linux-Copy1.ipynb clsi_profile_type2_linux.ipynb input.csv_table.csv output.csv suite_config.xml test-data/asist_input.csv test-data/asist_output.csv test-data/input2_table.csv test-data/output.csv tool.sh tool_asist.sh tool_shed.sh |
| diffstat | 18 files changed, 3207 insertions(+), 3926 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.md Tue Jun 29 12:15:06 2021 +0000 @@ -0,0 +1,20 @@ +# clsi_profile + + CLSI profile for ASIST using the CLSI standards 2020 by AST profiling for bacteria. It help to generate the input file for ASIST program based on MIC values provided by CLSI based AST profiling. + +# ASIST: Antimicrobial Susceptibility standards** + + In the first column strain names will be mentioned, the second column will be left blank for getting resistance phenotype, starting two rows will comprise antibiotic names (first row) and antibiotic classes (second row). The data for the resistance profile will then start from the C3 column of an excel file which can be converted into a .csv file. Since B3 is left blank, after implementing the algorithm, column B3 will be filled with the resistance phenotype (susceptible, MDR, XDR, PDR). + +**Example Input CSV file:** + + Strain name,Resistance_phenotype,Antibiotic_A1,Antibiotic_A2,Antibiotic_A_N + Strain_1,Phenotype_1,Resistant,Resistant,Resistant + Strain_2,Phenotype_2,Resistant,Susceptible,Resistant + + Link to the code : https://github.com/rakesh4osdd/asist + + +# ASIST tool suite + + These tools can be install from Galaxy toolshed to a Galaxy installation https://galaxyproject.org/admin/get-galaxy/.
--- a/asist_dynamic.ipynb Tue Jun 29 05:20:41 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,310 +0,0 @@ -{ - "cells": [ - { - "cell_type": "code", - "execution_count": 1309, - "id": "27cfc66f", - "metadata": {}, - "outputs": [], - "source": [ - "#ASIST program for phenotype based on Antibiotics profile\n", - "# create a profile based on selected antibiotics only\n", - "# rakesh4osdd@gmail.com, 14-June-2021" - ] - }, - { - "cell_type": "code", - "execution_count": 1, - "id": "75a352b7", - "metadata": {}, - "outputs": [], - "source": [ - "import pandas as pd\n", - "import sys\n", - "import os\n", - "from collections import Counter" - ] - }, - { - "cell_type": "code", - "execution_count": 176, - "id": "d66ec0d2", - "metadata": {}, - "outputs": [], - "source": [ - "input_file=sys.argv[1]\n", - "output_file=sys.argv[2]\n", - "#input_file='test-data/asist_input.csv'\n", - "#output_file='test-data/asist_output.csv'" - ] - }, - { - "cell_type": "code", - "execution_count": 177, - "id": "bf24c946", - "metadata": {}, - "outputs": [], - "source": [ - "# strain_profile to phenotype condition\n", - "def s_phen(sus,res,intm,na,pb_sus):\n", - " if (sus>0 and res==0 and na>=0):\n", - " #print('Possible Susceptible')\n", - " phen='Possible Susceptible'\n", - " elif (sus>=0 and 3<=res<7 and na>=0 and pb_sus==0):\n", - " #print('Possible MDR')\n", - " phen='Possible MDR'\n", - " elif (sus>=0 and 7<=res<9 and na>=0 and pb_sus==0):\n", - " #print('Possible XDR')\n", - " phen='Possible XDR'\n", - " #special cases\n", - " elif (sus>=1 and res>0 and na>=0 and pb_sus==1):\n", - " #print('Possible XDR')\n", - " phen='Possible XDR'\n", - " #special cases\n", - " elif (sus>0 and res==9 and na>=0):\n", - " #print('Possible XDR')\n", - " phen='Possible XDR'\n", - " elif (sus==0 and res==9 and na>=0):\n", - " #print('Possible TDR')\n", - " phen='Possible TDR'\n", - " else:\n", - " #print('Strain could not be classified')\n", - " phen='Strain could not be classified ('+ str(intm)+' | ' + str(na) +')'\n", - " return(phen)\n", - "\n", - "#print(s_phen(1,9,0,0))" - ] - }, - { - "cell_type": "code", - "execution_count": 178, - "id": "8bad7d9d", - "metadata": {}, - "outputs": [], - "source": [ - "# define Antibiotic groups as per antibiotic of CLSI breakpoints MIC\n", - "#Aminoglycoside\n", - "cat1=['Amikacin','Tobramycin','Gentamycin','Netilmicin']\n", - "#Beta-lactams- Carbapenems\n", - "cat2=['Imipenem','Meropenam','Doripenem']\n", - "#Fluoroquinolone\n", - "cat3=['Ciprofloxacin','Levofloxacin']\n", - "#Beta-lactam inhibitor\n", - "cat4=['Piperacillin/tazobactam','Ticarcillin/clavulanicacid']\n", - "#Cephalosporin\n", - "cat5=['Cefotaxime','Ceftriaxone','Ceftazidime','Cefepime']\n", - "#Sulfonamides\n", - "cat6=['Trimethoprim/sulfamethoxazole']\n", - "#Penicillins/beta-lactamase\n", - "cat7=['Ampicillin/sulbactam']\n", - "#Polymyxins\n", - "cat8=['Colistin','Polymyxinb']\n", - "#Tetracycline\n", - "cat9=['Tetracycline','Doxicycline','Minocycline']\n", - "\n", - "def s_profiler(pd_series):\n", - " #print(type(pd_series),'\\n', pd_series)\n", - " #create a dictionary of dataframe series\n", - " cats={'s1':cat1,'s2':cat2,'s3':cat3,'s4':cat4,'s5':cat5,'s6':cat6,'s7':cat7,'s8':cat8,'s9':cat9}\n", - " # find the antibiotics name in input series\n", - " for cat in cats:\n", - " #print(cats[cat])\n", - " cats[cat]=pd_series.filter(cats[cat])\n", - " #print(cats[cat])\n", - " #define res,sus,intm,na,pb_sus\n", - " res=0\n", - " sus=0\n", - " intm=0\n", - " na=0\n", - " pb_sus=0\n", - " # special case of 'Polymyxin b' for its value\n", - " if 'Polymyxinb' in pd_series:\n", - " ctp=cats['s8']['Polymyxinb'].strip().lower()\n", - " if ctp == 'susceptible':\n", - " pb_sus=1\n", - " #print((ctp,p_sus))\n", - " # check all categories\n", - " for cat in cats:\n", - " #ctp=cats['s8'].iloc[i:i+1].stack().value_counts().to_dict()\n", - " #print(ctp)\n", - " # Pandas series\n", - " ct=cats[cat].value_counts().to_dict()\n", - " #print(ct)\n", - " # remove whitespace and convert to lowercase words\n", - " ct = {k.strip().lower(): v for k, v in ct.items()}\n", - " #print(ct)\n", - " k=Counter(ct)\n", - " #j=Counter(ct)+Counter(j)\n", - " #print(j)\n", - " # category wise marking\n", - " if k['resistant']>=1:\n", - " res=res+1\n", - " if k['susceptible']>=1:\n", - " sus=sus+1\n", - " if k['intermediate']>=1:\n", - " intm=intm+1\n", - " if k['na']>=1:\n", - " na=na+1\n", - " #print(sus,res,intm,na,pb_sus)\n", - " #print(s_phen(sus,res,intm,na,pb_sus))\n", - " return(s_phen(sus,res,intm,na,pb_sus))" - ] - }, - { - "cell_type": "code", - "execution_count": 179, - "id": "7629fc10", - "metadata": {}, - "outputs": [], - "source": [ - "#input_file='input2.csv_table.csv'\n", - "#output_file=input_file+'_output.txt'\n", - "strain_profile=pd.read_csv(input_file, sep=',',na_filter=False,skipinitialspace = True)" - ] - }, - { - "cell_type": "code", - "execution_count": 180, - "id": "bed1abba", - "metadata": {}, - "outputs": [], - "source": [ - "old_strain_name=strain_profile.columns[0]\n", - "new_strain_name=old_strain_name.capitalize().strip().replace(' ', '')" - ] - }, - { - "cell_type": "code", - "execution_count": 181, - "id": "a64b5022", - "metadata": {}, - "outputs": [], - "source": [ - "# make header capitalization, remove leading,lagging, and multiple whitespace for comparision\n", - "strain_profile.columns=strain_profile.columns.str.capitalize().str.strip().str.replace('\\s+', '', regex=True)\n", - "#print(strain_profile.columns)\n", - "#strain_profile.head()\n", - "#strain_profile.columns" - ] - }, - { - "cell_type": "code", - "execution_count": 182, - "id": "caac57d7", - "metadata": {}, - "outputs": [], - "source": [ - "# add new column in dataframe on second position\n", - "strain_profile.insert(1, 'Strain phenotype','')\n", - "#strain_profile.head()" - ] - }, - { - "cell_type": "code", - "execution_count": 183, - "id": "eb4b0c4d", - "metadata": { - "scrolled": true - }, - "outputs": [], - "source": [ - "strain_profile['Strain phenotype'] = strain_profile.apply(lambda x: (s_profiler(x)), axis=1)" - ] - }, - { - "cell_type": "code", - "execution_count": 184, - "id": "86441c0f", - "metadata": {}, - "outputs": [], - "source": [ - "#strain_profile.head()" - ] - }, - { - "cell_type": "code", - "execution_count": 185, - "id": "75698be5", - "metadata": {}, - "outputs": [], - "source": [ - "#rename headers for old name\n", - "strain_profile=strain_profile.rename(columns = {new_strain_name:old_strain_name, 'Ticarcillin/clavulanicacid':'Ticarcillin/ clavulanic acid','Piperacillin/tazobactam':'Piperacillin/ tazobactam','Trimethoprim/sulfamethoxazole': 'Trimethoprim/ sulfamethoxazole','Ampicillin/sulbactam':'Ampicillin/ sulbactam', 'Polymyxinb': 'Polymyxin B'} )" - ] - }, - { - "cell_type": "code", - "execution_count": 186, - "id": "c14a13eb", - "metadata": { - "scrolled": true - }, - "outputs": [], - "source": [ - "#strain_profile.columns" - ] - }, - { - "cell_type": "code", - "execution_count": 187, - "id": "ff484767", - "metadata": {}, - "outputs": [], - "source": [ - "#strain_profile" - ] - }, - { - "cell_type": "code", - "execution_count": 188, - "id": "5ab72211", - "metadata": {}, - "outputs": [], - "source": [ - "strain_profile.to_csv(output_file,na_rep='NA',index=False)" - ] - }, - { - "cell_type": "code", - "execution_count": 189, - "id": "020dbe85", - "metadata": {}, - "outputs": [], - "source": [ - "# Open a file with access mode 'a'\n", - "with open(output_file, \"a\") as file_object:\n", - " # Append 'hello' at the end of file\n", - " file_object.write(\"Note: \\n1. 'MDR': Multidrug-resistant, 'XDR': Extensively drug-resistant, 'TDR':totally drug resistant, NA': Data Not Available.\\n2. 'Strain could not be classified' numbers follow the format as ('Number of antibiotics categories count as Intermediate' | 'Number of antibiotics categories count as NA')\")" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "9c17e66a", - "metadata": {}, - "outputs": [], - "source": [] - } - ], - "metadata": { - "kernelspec": { - "display_name": "Python 3", - "language": "python", - "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.7.10" - } - }, - "nbformat": 4, - "nbformat_minor": 5 -}
--- a/asist_dynamic.py Tue Jun 29 05:20:41 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,190 +0,0 @@ -#!/usr/bin/env python -# coding: utf-8 - -# In[1309]: - - -#ASIST program for phenotype based on Antibiotics profile -# create a profile based on selected antibiotics only -# rakesh4osdd@gmail.com, 14-June-2021 - - -# In[1403]: - - -import pandas as pd -import sys -import os -from collections import Counter - - -# In[ ]: - - -input_file=sys.argv[1] -output_file=sys.argv[2] - - -# In[1362]: - - -# strain_profile to phenotype condition -def s_phen(sus,res,na,pb_sus): - if (sus>0 and res==0 and na>=0): - #print('Possible Susceptible') - phen='Possible Susceptible' - elif (sus>=0 and 3<=res<7 and na>=0 and pb_sus==0): - #print('Possible MDR') - phen='Possible MDR' - elif (sus>=0 and 7<=res<9 and na>=0 and pb_sus==0): - #print('Possible XDR') - phen='Possible XDR' - #special cases - elif (sus>=1 and res>0 and na>=0 and pb_sus==1): - #print('Possible XDR') - phen='Possible XDR' - #special cases - elif (sus>0 and res==9 and na>=0): - #print('Possible XDR') - phen='Possible XDR' - elif (sus==0 and res==9 and na>=0): - #print('Possible TDR') - phen='Possible TDR' - else: - #print('Strain could not be classified') - phen='Strain could not be classified' - return(phen) - -#print(s_phen(1,9,0,0)) - - -# In[1363]: - - -# define Antibiotic groups as per antibiotic of CLSI breakpoints MIC -#Aminoglycoside -cat1=['Amikacin','Tobramycin','Gentamycin','Netilmicin'] -#Beta-lactams- Carbapenems -cat2=['Imipenem','Meropenam','Doripenem'] -#Fluoroquinolone -cat3=['Ciprofloxacin','Levofloxacin'] -#Beta-lactam inhibitor -cat4=['Piperacillin/tazobactam','Ticarcillin/clavulanicacid'] -#Cephalosporin -cat5=['Cefotaxime','Ceftriaxone','Ceftazidime','Cefepime'] -#Sulfonamides -cat6=['Trimethoprim/sulfamethoxazole'] -#Penicillins/beta-lactamase -cat7=['Ampicillin/sulbactam'] -#Polymyxins -cat8=['Colistin','Polymyxinb'] -#Tetracycline -cat9=['Tetracycline','Doxicycline','Minocycline'] - -def s_profiler(pd_series): - #print(type(pd_series),'\n', pd_series) - #create a dictionary of dataframe series - cats={'s1':cat1,'s2':cat2,'s3':cat3,'s4':cat4,'s5':cat5,'s6':cat6,'s7':cat7,'s8':cat8,'s9':cat9} - # find the antibiotics name in input series - for cat in cats: - #print(cats[cat]) - cats[cat]=pd_series.filter(cats[cat]) - #print(cats[cat]) - #define res,sus,na,pb_sus - res=0 - sus=0 - na=0 - pb_sus=0 - # special case of 'Polymyxin b' for its value - if 'Polymyxinb' in pd_series: - ctp=cats['s8']['Polymyxinb'].strip().lower() - if ctp == 'susceptible': - pb_sus=1 - #print((ctp,p_sus)) - # check all categories - for cat in cats: - #ctp=cats['s8'].iloc[i:i+1].stack().value_counts().to_dict() - #print(ctp) - # Pandas series - ct=cats[cat].value_counts().to_dict() - #print(ct) - # remove whitespace and convert to lowercase words - ct = {k.strip().lower(): v for k, v in ct.items()} - #print(ct) - k=Counter(ct) - #j=Counter(ct)+Counter(j) - #print(j) - # category wise marking - if k['resistant']>=1: - res=res+1 - if k['susceptible']>=1: - sus=sus+1 - if k['na']>=1: - na=na+1 - #print(s_phen(sus,res,na,pb_sus)) - return(s_phen(sus,res,na,pb_sus)) - - -# In[1397]: - - -#input_file='input2.csv_table.csv' -#output_file=input_file+'_output.txt' -strain_profile=pd.read_csv(input_file, sep=',',na_filter=False,skipinitialspace = True) - - -# In[1387]: - - -old_strain_name=strain_profile.columns[0] -new_strain_name=old_strain_name.capitalize().strip().replace(' ', '') - - -# In[1388]: - - -# make header capitalization, remove leading,lagging, and multiple whitespace for comparision -strain_profile.columns=strain_profile.columns.str.capitalize().str.strip().str.replace('\s+', '', regex=True) -#print(strain_profile.columns) -#strain_profile.head() -#strain_profile.columns - - -# In[1389]: - - -# add new column in dataframe on second position -strain_profile.insert(1, 'Strain phenotype','') -#strain_profile.head() - - -# In[1390]: - - -strain_profile['Strain phenotype'] = strain_profile.apply(lambda x: (s_profiler(x)), axis=1) - - -# In[1391]: - - -#strain_profile.head() - - -# In[1392]: - - -#rename headers for old name -strain_profile=strain_profile.rename(columns = {new_strain_name:old_strain_name, 'Ticarcillin/clavulanicacid':'Ticarcillin/ clavulanic acid','Piperacillin/tazobactam':'Piperacillin/ tazobactam','Trimethoprim/sulfamethoxazole': 'Trimethoprim/ sulfamethoxazole','Ampicillin/sulbactam':'Ampicillin/ sulbactam', 'Polymyxinb': 'Polymyxin B'} ) - - -# In[1404]: - - -#strain_profile - - -# In[1394]: - - -strain_profile.to_csv(output_file,na_rep='NA',index=False) -
--- a/clsi_profile.py Tue Jun 29 05:20:41 2021 +0000 +++ b/clsi_profile.py Tue Jun 29 12:15:06 2021 +0000 @@ -1,7 +1,7 @@ #!/usr/bin/env python # coding: utf-8 -# In[206]: +# In[115]: # ASIST module2 | map AST result to the CLSI breakporints with combination antibiotics @@ -11,13 +11,13 @@ import sys -# In[207]: +# In[116]: #print(pd.__version__, re.__version__) -# In[208]: +# In[117]: # compare two MIC value strings @@ -95,9 +95,9 @@ elif (mic_type=='i' and (float(m1a)==float(m2a))): m_type='Intermediate' else: - m_type='Strain could not be classified-1' + m_type='Strain could not be classified' except IndexError: - strain_type='Strain could not be classified-2' + strain_type='Strain could not be classified' return(strain_type) return(m_type) @@ -105,7 +105,7 @@ #check_mic('65','32-64','i') -# In[209]: +# In[118]: # compare MIC value in pandas list @@ -132,7 +132,7 @@ #sus_res_int(mic) -# In[210]: +# In[119]: # for input argument @@ -141,36 +141,57 @@ output_table = sys.argv[3] -# In[211]: +# In[3]: + -""" -input_user='input.csv' -input_clsi='clsi.csv' -output_profile=input_user+'_profile.csv' -output_table=input_user+'_table.csv' -""" +"""#input_user='~/Jupyterlab_notebook/ASIST_module/strain_profiles_16k.csv.csv' +input_user='test-data/input2.csv' +input_clsi='test-data/clsi.csv' +output_profile='test-data/input2_profile.csv' +output_table='test-data/input2_table.csv' +#output_table='/home/rakesh/Jupyterlab_notebook/ASIST_module/strain_profiles_16k_table.csv'""" -# In[212]: + +# In[146]: # read user AST data with selected 3 columns strain_mic=pd.read_csv(input_user, sep=',', usecols =['Strain name', 'Antibiotics', 'MIC'],na_filter=False) +#strain_mic -# In[213]: +# In[147]: clsi_bp=pd.read_csv(input_clsi,sep=',') +#clsi_bp[clsi_bp[['Antibiotics', 'Susceptible']].duplicated()].shape -# In[214]: + +# In[148]: #clsi_bp #strain_mic -# In[215]: +# In[149]: + + +input_dups=strain_mic[strain_mic[['Strain name','Antibiotics']].duplicated()] +if (input_dups.shape[0] == 0): + #print( "No duplicates") + pass +else: + input_dups.to_csv(output_table,na_rep='NA') + with open(output_table, "a") as file_object: + # Append 'hello' at the end of file + file_object.write('Input File Error: Please remove duplicate/mutiple MIC values for same combination of Strain name and Antibiotics from input file') + exit() +#input_dups.head() + + +# In[125]: # convert MIC to numbers sMIC, rMIC @@ -179,13 +200,13 @@ clsi_bp['i_mic'] = clsi_bp[['Intermediate']].applymap(lambda x: (re.sub(r'[^0-9.\/-]', '', x))) -# In[216]: +# In[126]: #clsi_bp['i_mic'] = clsi_bp[['Intermediate']].applymap(lambda x: (re.sub(r'[^0-9.\/-]', '', x))) -# In[217]: +# In[127]: # Read only numbers in MIC values @@ -195,32 +216,46 @@ # print('Waring: Error in MIC value') -# In[218]: +# In[128]: #strain_mic -# In[219]: +# In[129]: # capitalize each Antibiotic Name for comparision with removing whitespace +strain_mic['Strain name']=strain_mic['Strain name'].str.capitalize().str.replace(" ","") strain_mic['Antibiotics']=strain_mic['Antibiotics'].str.capitalize().str.replace(" ","") + clsi_bp['Antibiotics']=clsi_bp['Antibiotics'].str.capitalize().str.replace(" ","") -# In[220]: +# In[130]: -#compare CLSI Antibiotics only -#result=pd.merge(strain_mic, clsi_bp, on='Antibiotics',how='inner', indicator=True)[['Strain name','Antibiotics', 'MIC', 'o_mic', 's_mic', 'r_mic','_merge']] -try: - result=pd.merge(strain_mic, clsi_bp, on='Antibiotics',how='inner')[['Strain name','Antibiotics', 'MIC', 'o_mic', 's_mic', 'r_mic','i_mic']] -except KeyError: - print('Waring: Error in input Values') +#find duplicate values in input files +dups=strain_mic[strain_mic[['Strain name', 'Antibiotics']].duplicated(keep=False)] +if dups.shape[0] != 0: + print ('Please provide a single MIC value in input file for given duplicates combination of \'Strain name and Antibiotics\' to use the tool:-\n',dups) + #exit() +else: + #compare CLSI Antibiotics only + #result=pd.merge(strain_mic, clsi_bp, on='Antibiotics',how='inner', indicator=True)[['Strain name','Antibiotics', 'MIC', 'o_mic', 's_mic', 'r_mic','_merge']] + try: + result=pd.merge(strain_mic, clsi_bp, on='Antibiotics',how='inner')[['Strain name','Antibiotics', 'MIC', 'o_mic', 's_mic', 'r_mic','i_mic']] + except KeyError: + print('Waring: Error in input Values') -# In[221]: +# In[131]: + + +#result + + +# In[132]: #compare MIC values and assign Susceptible and Resistant to Strain @@ -230,19 +265,19 @@ # print('Waring: Error in input MIC value') -# In[222]: +# In[133]: #result -# In[223]: +# In[134]: #result[['Strain name', 'Antibiotics', 'MIC','s_mic','r_mic','CLSI_profile']].to_csv(output_profile,sep=',', index=False, encoding='utf-8-sig') -# In[224]: +# In[135]: #create a pivot table for ASIST @@ -250,55 +285,55 @@ result_table=pd.pivot_table(table, values ='CLSI_profile', index =['Strain name'],columns =['Antibiotics'], aggfunc = lambda x: ' '.join(x)) -# In[225]: +# In[136]: #result_table -# In[226]: +# In[137]: #result_table.to_csv(output_table,na_rep='NA') -# In[227]: +# In[138]: # reorder the Antibiotics for ASIST -clsi_ab=['Amikacin','Tobramycin','Gentamycin','Imipenem','Meropenem','Doripenem','Ciprofloxacin','Levofloxacin', +clsi_ab=['Amikacin','Tobramycin','Gentamycin','Netilmicin','Imipenem','Meropenem','Doripenem','Ciprofloxacin','Levofloxacin', 'Piperacillin/tazobactam','Ticarcillin/clavulanicacid','Cefotaxime','Ceftriaxone','Ceftazidime','Cefepime', 'Trimethoprim/sulfamethoxazole','Ampicillin/sulbactam','Colistin','Polymyxinb','Tetracycline','Doxicycline ', 'Minocycline'] result_selected=result_table.filter(clsi_ab) -# In[228]: +# In[139]: #print(result_selected.shape, result_table.shape) -# In[229]: +# In[140]: #result_selected.insert(0,'Resistance_phenotype','') -# In[230]: +# In[141]: #rename headers result_selected=result_selected.rename(columns = {'Ticarcillin/clavulanicacid':'Ticarcillin/clavulanic acid','Piperacillin/tazobactam':'Piperacillin/ tazobactam','Trimethoprim/sulfamethoxazole': 'Trimethoprim/ sulfamethoxazole','Ampicillin/sulbactam':'Ampicillin/ sulbactam', 'Polymyxinb': 'Polymyxin B'} ) -# In[231]: +# In[142]: #result_selected -# In[232]: +# In[144]: result_selected.to_csv(output_table,na_rep='NA')
--- a/clsi_profile.xml Tue Jun 29 05:20:41 2021 +0000 +++ b/clsi_profile.xml Tue Jun 29 12:15:06 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="clsi_profile" name="CLSI Profile" version="0.1.6" python_template_version="3.5"> +<tool id="clsi_profile" name="CLSI Profile" version="0.1.7" python_template_version="3.5"> <description>MIC profile using CLSI MIC breakpoints</description> <requirements> <requirement type="package">pandas</requirement>
--- a/clsi_profile_type2.py Tue Jun 29 05:20:41 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,244 +0,0 @@ -#!/usr/bin/env python -# coding: utf-8 - -# In[1245]: - - -# ASIST module2 | map AST result to the CLSI breakporints with combination antibiotics -# By rakesh4osdd@gmail.com, 06-Jun-2021 -import pandas as pd -import re -import sys - - -# In[1246]: - - -# cross check MIC values -def sus_res(mic): - #print(mic) - #print ((mic,pd.isna(mic[1]),pd.isna(mic[0]),'\n') - if not (pd.isna(mic[0]) or pd.isna(mic[1]) or pd.isna(mic[2])):#check for NaN value - #remove unwanted whitespace - o_mic = mic[0].replace(' ', '') - s_mic = mic[1].replace(' ', '') - r_mic = mic[2].replace(' ', '') - #print (o_mic,s_mic,r_mic) - #print (type(o_mic),type(s_mic),type(r_mic)) - if '/' in s_mic: #check for combination antibiotics - #print ('combination antibiotics') - try: - if '/' in o_mic: - #print ('input combination') - if (float(o_mic.split('/')[0]) <= float(s_mic.split('/')[0]) and float(o_mic.split('/')[1]) <= float(s_mic.split('/')[1])): - strain_type='Susceptible' - elif (float(o_mic.split('/')[0]) >= float(r_mic.split('/')[0]) and float(o_mic.split('/')[1]) >= float(r_mic.split('/')[1])): - strain_type='Resistant' - else: - strain_type='Intermediate' - else: - #print ('single') - if float(o_mic)==0: - strain_type='Strain could not classified' - elif (float(o_mic.split('/')[0]) <= float(s_mic.split('/')[0]) and float(1) <= float(s_mic.split('/')[1])): - strain_type='Susceptible' - elif (float(o_mic.split('/')[0]) >= float(r_mic.split('/')[0]) and float(1) >= float(r_mic.split('/')[1])): - strain_type='Resistant' - else: - strain_type='Intermediate' - except ValueError: - strain_type='Strain could not classified' - else: #single antibiotics - #print('single antibiotics') - if o_mic: - if float(o_mic)==0: - strain_type='Strain could not classified' - elif (float(o_mic) <= float(s_mic)): - strain_type='Susceptible' - elif (float(o_mic) >= float(r_mic)): - strain_type='Resistant' - else: - strain_type='Intermediate' - else: - strain_type='Strain could not classified' - else: - strain_type='Strain could not classified' - return(strain_type) - - -# In[ ]: - -# for input argument -input_user = sys.argv[1] -input_clsi = sys.argv[2] -output_table = sys.argv[3] - -# In[1247]: - - -""" -input_user='input_ast_comb2.csv' -input_clsi='clsi_profile_comb.csv' -output_profile=input_user+'_profile.csv' -output_table=input_user+'_table.csv' - -""" - -# In[1248]: - - -# read user AST data with selected 3 columns -strain_mic=pd.read_csv(input_user, sep=',', usecols =['Strain name', 'Antibiotics', 'MIC'],na_filter=False) - - -# In[1249]: - - -clsi_bp=pd.read_csv(input_clsi,sep=',') - - -# In[1290]: - - -#clsi_bp.head(2) -#strain_mic - - -# In[1251]: - - -# convert MIC to numbers sMIC, rMIC -clsi_bp['s_mic'] =clsi_bp[['Susceptible']].applymap(lambda x: (re.sub(r'[^0-9.\/]', '', x))) -clsi_bp['r_mic'] =clsi_bp[['Resistant']].applymap(lambda x: (re.sub(r'[^0-9.\/]', '', x))) - - -# In[1252]: - - -# Read only numbers in MIC values -#try: -strain_mic['o_mic']=strain_mic[['MIC']].applymap(lambda x: (re.sub(r'[^0-9.\/]','', x))) -#except TypeError: -# print('Waring: Error in MIC value') - - -# In[1289]: - - -#strain_mic.head() - - -# In[1254]: - - -# capitalize each Antibiotic Name for comparision with removing whitespace -strain_mic['Antibiotics']=strain_mic['Antibiotics'].str.capitalize().str.replace(" ","") -clsi_bp['Antibiotics']=clsi_bp['Antibiotics'].str.capitalize().str.replace(" ","") - - -# In[1255]: - - -#compare CLSI Antibiotics only -#result=pd.merge(strain_mic, clsi_bp, on='Antibiotics',how='inner', indicator=True)[['Strain name','Antibiotics', 'MIC', 'o_mic', 's_mic', 'r_mic','_merge']] -try: - result=pd.merge(strain_mic, clsi_bp, on='Antibiotics',how='inner')[['Strain name','Antibiotics', 'MIC', 'o_mic', 's_mic', 'r_mic']] -except KeyError: - print('Waring: Error in input Values') - - -# In[1256]: - - -#compare MIC values and assign Susceptible and Resistant to Strain -#try: -result[['CLSI_profile']] = result[['o_mic','s_mic','r_mic']].apply(sus_res,axis = 1) -#except ValueError: -# print('Waring: Error in input MIC value') - - -# In[1288]: - - -#result - - -# In[1258]: - - -#result[['Strain name', 'Antibiotics', 'MIC','s_mic','r_mic','CLSI_profile']].to_csv(output_profile,sep=',', index=False, encoding='utf-8-sig') - - -# In[1259]: - - -#create a pivot table for ASIST -table=result[['Strain name', 'Antibiotics','CLSI_profile']].drop_duplicates() -result_table=pd.pivot_table(table, values ='CLSI_profile', index =['Strain name'],columns =['Antibiotics'], aggfunc = lambda x: ' '.join(x)) - - -# In[1261]: - - -result_table - - -# In[1264]: - - -#result_table.to_csv(output_table,na_rep='NA') - - -# In[1282]: - - -# reorder the Antibiotics for ASIST -clsi_ab=['Amikacin','Tobramycin','Gentamycin','Imipenem','Meropenem','Doripenem','Ciprofloxacin','Levofloxacin', - 'Piperacillin/tazobactam','Ticarcillin/clavulanicacid','Cefotaxime','Ceftriaxone','Ceftazidime','Cefepime', - 'Trimethoprim/sulfamethoxazole','Ampicillin/sulbactam','Colistin','Polymyxinb','Tetracycline','Doxicycline ', - 'Minocycline'] -result_selected=result_table.filter(clsi_ab) - - -# In[1283]: - - -result_selected.shape - - -# In[1284]: - - -result_table.shape - - -# In[1285]: - - -result_selected.insert(0,'Resistance_phenotype','') - - -# In[1286]: - - -result_selected.to_csv(output_table,na_rep='NA') - - -# In[1287]: - - -#rename headers -result_selected.rename(columns = {'Ticarcillin/clavulanicacid':'Ticarcillin/clavulanic acid','Piperacillin/tazobactam':'Piperacillin/ tazobactam','Trimethoprim/sulfamethoxazole': 'Trimethoprim/ sulfamethoxazole','Ampicillin/sulbactam':'Ampicillin/ sulbactam', 'Polymyxinb': 'Polymyxin B'} ) - - -# In[ ]: - - - - - -# In[ ]: - - - -
--- a/clsi_profile_type2_linux-Copy1.ipynb Tue Jun 29 05:20:41 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2461 +0,0 @@ -{ - "cells": [ - { - "cell_type": "code", - "execution_count": 1, - "id": "967b1345", - "metadata": {}, - "outputs": [], - "source": [ - "# ASIST module2 | map AST result to the CLSI breakporints with combination antibiotics\n", - "# By rakesh4osdd@gmail.com, 06-Jun-2021\n", - "import pandas as pd\n", - "import re\n", - "import sys" - ] - }, - { - "cell_type": "code", - "execution_count": 2, - "id": "39e25c15", - "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "1.2.4 2.2.1\n" - ] - } - ], - "source": [ - "print(pd.__version__, re.__version__)" - ] - }, - { - "cell_type": "code", - "execution_count": 175, - "id": "c96d7c62", - "metadata": {}, - "outputs": [], - "source": [ - "# cross check MIC values\n", - "def sus_res(mic):\n", - " print(mic)\n", - " #print ((mic,pd.isna(mic[1]),pd.isna(mic[0]),'\\n')\n", - " if not (pd.isna(mic[0]) or pd.isna(mic[1]) or pd.isna(mic[2])):#check for NaN value\n", - " #remove unwanted whitespace\n", - " o_mic = mic[0].replace(' ', '')\n", - " s_mic = mic[1].replace(' ', '')\n", - " r_mic = mic[2].replace(' ', '')\n", - " i_mic = mic[3].replace(' ', '')\n", - " print(imic(o_mic,i_mic))\n", - " #print (o_mic,s_mic,r_mic)\n", - " #print (type(o_mic),type(s_mic),type(r_mic))\n", - " if '/' in s_mic: #check for combination antibiotics\n", - " #print ('combination antibiotics')\n", - " try:\n", - " if '/' in o_mic:\n", - " #print ('input combination')\n", - " if (float(o_mic.split('/')[0]) <= float(s_mic.split('/')[0]) and float(o_mic.split('/')[1]) <= float(s_mic.split('/')[1])):\n", - " strain_type='Susceptible'\n", - " elif (float(o_mic.split('/')[0]) >= float(r_mic.split('/')[0]) and float(o_mic.split('/')[1]) >= float(r_mic.split('/')[1])):\n", - " strain_type='Resistant'\n", - " elif (imic(o_mic,i_mic)):\n", - " strain_type='Intermediate-1' \n", - " else:\n", - " strain_type='Intermediate-2'\n", - " else: \n", - " #print ('single')\n", - " if float(o_mic)==0:\n", - " strain_type='Strain could not classified'\n", - " elif (float(o_mic.split('/')[0]) <= float(s_mic.split('/')[0]) and float(1) <= float(s_mic.split('/')[1])):\n", - " strain_type='Susceptible'\n", - " elif (float(o_mic.split('/')[0]) >= float(r_mic.split('/')[0]) and float(1) >= float(r_mic.split('/')[1])):\n", - " strain_type='Resistant'\n", - " else:\n", - " strain_type='Intermediate-3'\n", - " except ValueError:\n", - " strain_type='Strain could not classified-1'\n", - " elif (s_mic == '-'):\n", - " if o_mic:\n", - " if float(o_mic)==0:\n", - " strain_type='Strain could not classified-2'\n", - " #elif (float(o_mic) <= float(s_mic)):\n", - " # strain_type='Susceptible'\n", - " elif (float(o_mic) >= float(r_mic)):\n", - " strain_type='Resistant'\n", - " elif (imic(o_mic,i_mic)):\n", - " strain_type='Intermediat-4'\n", - " else:\n", - " strain_type='Intermediate-5'\n", - " else:\n", - " strain_type='Strain could not classified-3'\n", - " else: #single antibiotics\n", - " #print('single antibiotics')\n", - " if o_mic:\n", - " if float(o_mic)==0:\n", - " strain_type='Strain could not classified-4'\n", - " elif (float(o_mic) <= float(s_mic)):\n", - " strain_type='Susceptible'\n", - " elif (float(o_mic) >= float(r_mic)):\n", - " strain_type='Resistant'\n", - " else:\n", - " strain_type='Intermediate-6'\n", - " else:\n", - " strain_type='Strain could not classified-5'\n", - " else:\n", - " strain_type='Strain could not classified-6'\n", - " return(strain_type)" - ] - }, - { - "cell_type": "code", - "execution_count": 176, - "id": "dbc70e34", - "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "['32/2', '16/4', '128/4', '32/4-64/4']\n", - "32/2 32/4-64/4\n", - "False\n", - "32/2 32/4-64/4\n" - ] - }, - { - "data": { - "text/plain": [ - "'Intermediate-2'" - ] - }, - "execution_count": 176, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "mic=['32/2','16/4','128/4','32/4-64/4']\n", - "sus_res(mic)" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "653b096e", - "metadata": {}, - "outputs": [], - "source": [] - }, - { - "cell_type": "code", - "execution_count": 202, - "id": "626a1e3f", - "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "65/4 64/4 s\n", - "65 4 64 4 s\n" - ] - }, - { - "data": { - "text/plain": [ - "'Strain could not classified-5'" - ] - }, - "execution_count": 202, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "def check_mic(mic1,mic2,mic_type):\n", - " print(mic1,mic2,mic_type)\n", - " m1a = mic1.split('/')[0]\n", - " m1b = mic1.split('/')[1]\n", - " if '-' in mic2: # for intermediate only\n", - " m2a = mic2.split('-')[0].split('/')[0]\n", - " m2b = mic2.split('-')[0].split('/')[1]\n", - " m2aa = mic2.split('-')[1].split('/')[0]\n", - " m2bb = mic2.split('-')[1].split('/')[1]\n", - " if (float(m2aa)>=float(m1a)>=float(m2a) and float(m2b)>=float(m1b)>=float(m2b)):\n", - " #print('intermediate')\n", - " mic_type='Intermediate-1'\n", - " else:\n", - " #print('not define')\n", - " mic_type='Strain could not classified-1'\n", - " #print (m1a,m1b,m2a,m2b,m2aa,m2bb)\n", - " else:\n", - " m2a = mic2.split('/')[0]\n", - " m2b = mic2.split('/')[1]\n", - " print(m1a,m1b,m2a,m2b,mic_type)\n", - " if mic_type=='s':\n", - " if (float(m1a)<=float(m2a) and float(m1b)<=float(m2b)):\n", - " mic_type='Susceptible'\n", - " else:\n", - " mic_type='Strain could not classified-5'\n", - " elif mic_type=='r':\n", - " if (float(m1a)>=float(m2a) and float(m1b)>=float(m2b)):\n", - " mic_type='Resistant'\n", - " else:\n", - " mic_type='Strain could not classified-4'\n", - " elif mic_type=='i':\n", - " if (float(m1a)==float(m2a) and float(m1b)==float(m2b)):\n", - " mic_type='Intermediate-2'\n", - " else:\n", - " mic_type='Strain could not classified-3'\n", - " else:\n", - " mic_type='Strain could not classified-2'\n", - " return(mic_type)\n", - " \n", - "check_mic('65/4','64/4','s')\n", - "# float(mic1.split('/')[0]) <= float(mic2.split('/')[0]) and float(mic1.split('/')[1]) <= float(mic2.split('/')[1])" - ] - }, - { - "cell_type": "code", - "execution_count": 171, - "id": "19905924", - "metadata": {}, - "outputs": [], - "source": [ - "#compare MIC values and assign Susceptible and Resistant to Strain\n", - "#try:\n", - "#result[['CLSI_profile']] = result[['o_mic','s_mic','r_mic','i_mic']].apply(sus_res,axis = 1)\n", - "#except ValueError:\n", - "# print('Waring: Error in input MIC value')\n", - "#result[['o_mic','s_mic','r_mic','i_mic']].apply(sus_res,axis = 1)\n", - "#del result['CLSI_profile']" - ] - }, - { - "cell_type": "code", - "execution_count": 42, - "id": "7784b77d", - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "'input_user = sys.argv[1]\\ninput_clsi = sys.argv[2]\\noutput_table = sys.argv[3]'" - ] - }, - "execution_count": 42, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "# for input argument\n", - "\"\"\"input_user = sys.argv[1]\n", - "input_clsi = sys.argv[2]\n", - "output_table = sys.argv[3]\"\"\"" - ] - }, - { - "cell_type": "code", - "execution_count": 43, - "id": "1dee9127", - "metadata": {}, - "outputs": [], - "source": [ - "input_user='input.csv'\n", - "input_clsi='clsi.csv'\n", - "output_profile=input_user+'_profile.csv'\n", - "output_table=input_user+'_table.csv'" - ] - }, - { - "cell_type": "code", - "execution_count": 6, - "id": "14c5cfd3", - "metadata": {}, - "outputs": [], - "source": [ - "# read user AST data with selected 3 columns\n", - "strain_mic=pd.read_csv(input_user, sep=',', usecols =['Strain name', 'Antibiotics', 'MIC'],na_filter=False)" - ] - }, - { - "cell_type": "code", - "execution_count": 7, - "id": "77135cb7", - "metadata": {}, - "outputs": [], - "source": [ - "clsi_bp=pd.read_csv(input_clsi,sep=',')" - ] - }, - { - "cell_type": "code", - "execution_count": 10, - "id": "2ec1cbec", - "metadata": {}, - "outputs": [ - { - "data": { - "text/html": [ - "<div>\n", - "<style scoped>\n", - " .dataframe tbody tr th:only-of-type {\n", - " vertical-align: middle;\n", - " }\n", - "\n", - " .dataframe tbody tr th {\n", - " vertical-align: top;\n", - " }\n", - "\n", - " .dataframe thead th {\n", - " text-align: right;\n", - " }\n", - "</style>\n", - "<table border=\"1\" class=\"dataframe\">\n", - " <thead>\n", - " <tr style=\"text-align: right;\">\n", - " <th></th>\n", - " <th>Antibiotics</th>\n", - " <th>Susceptible</th>\n", - " <th>Resistant</th>\n", - " <th>Intermediate</th>\n", - " </tr>\n", - " </thead>\n", - " <tbody>\n", - " <tr>\n", - " <th>0</th>\n", - " <td>Amikacin</td>\n", - " <td>≤ 16</td>\n", - " <td>≥ 64</td>\n", - " <td>32</td>\n", - " </tr>\n", - " <tr>\n", - " <th>1</th>\n", - " <td>Tobramycin</td>\n", - " <td>≤ 4</td>\n", - " <td>≥ 16</td>\n", - " <td>8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>2</th>\n", - " <td>Gentamicin</td>\n", - " <td>≤ 4</td>\n", - " <td>≥ 16</td>\n", - " <td>8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>3</th>\n", - " <td>Netilmicin</td>\n", - " <td>≤ 8</td>\n", - " <td>≥ 32</td>\n", - " <td>16</td>\n", - " </tr>\n", - " <tr>\n", - " <th>4</th>\n", - " <td>Imipenem</td>\n", - " <td>≤ 2</td>\n", - " <td>≥ 8</td>\n", - " <td>4</td>\n", - " </tr>\n", - " <tr>\n", - " <th>5</th>\n", - " <td>Meropenem</td>\n", - " <td>≤ 2</td>\n", - " <td>≥ 8</td>\n", - " <td>4</td>\n", - " </tr>\n", - " <tr>\n", - " <th>6</th>\n", - " <td>Doripenem</td>\n", - " <td>≤ 2</td>\n", - " <td>≥ 8</td>\n", - " <td>4</td>\n", - " </tr>\n", - " <tr>\n", - " <th>7</th>\n", - " <td>Ciprofloxacin</td>\n", - " <td>≤ 1</td>\n", - " <td>≥ 4</td>\n", - " <td>2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>8</th>\n", - " <td>Levofloxacin</td>\n", - " <td>≤ 2</td>\n", - " <td>≥ 8</td>\n", - " <td>4</td>\n", - " </tr>\n", - " <tr>\n", - " <th>9</th>\n", - " <td>Piperacillin/ tazobactam</td>\n", - " <td>≤ 16/4</td>\n", - " <td>≥ 128/4</td>\n", - " <td>32/4-64/4</td>\n", - " </tr>\n", - " <tr>\n", - " <th>10</th>\n", - " <td>Ticarcillin/ clavulanic acid</td>\n", - " <td>≤ 16/2</td>\n", - " <td>≥ 128/2</td>\n", - " <td>32/2-64/2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>11</th>\n", - " <td>Cefotaxime</td>\n", - " <td>≤ 8</td>\n", - " <td>≥ 64</td>\n", - " <td>16-32</td>\n", - " </tr>\n", - " <tr>\n", - " <th>12</th>\n", - " <td>Ceftriaxone</td>\n", - " <td>≤ 8</td>\n", - " <td>≥ 64</td>\n", - " <td>16-32</td>\n", - " </tr>\n", - " <tr>\n", - " <th>13</th>\n", - " <td>Ceftazidime</td>\n", - " <td>≤ 8</td>\n", - " <td>≥ 32</td>\n", - " <td>16</td>\n", - " </tr>\n", - " <tr>\n", - " <th>14</th>\n", - " <td>Cefepime</td>\n", - " <td>≤ 8</td>\n", - " <td>≥ 32</td>\n", - " <td>16</td>\n", - " </tr>\n", - " <tr>\n", - " <th>15</th>\n", - " <td>Trimethoprim/ sulfamethoxazole</td>\n", - " <td>≤ 2/38</td>\n", - " <td>≥ 4/76</td>\n", - " <td>-</td>\n", - " </tr>\n", - " <tr>\n", - " <th>16</th>\n", - " <td>Ampicillin/ sulbactam</td>\n", - " <td>≤ 8/4</td>\n", - " <td>≥ 32/16</td>\n", - " <td>16/8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>17</th>\n", - " <td>Colistin</td>\n", - " <td>-</td>\n", - " <td>≥ 4</td>\n", - " <td>≤ 2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>18</th>\n", - " <td>Polymyxin B</td>\n", - " <td>-</td>\n", - " <td>≥ 4</td>\n", - " <td>≤ 2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>19</th>\n", - " <td>Tetracycline</td>\n", - " <td>≤ 4</td>\n", - " <td>≥ 16</td>\n", - " <td>8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>20</th>\n", - " <td>Doxycycline</td>\n", - " <td>≤ 4</td>\n", - " <td>≥ 16</td>\n", - " <td>8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>21</th>\n", - " <td>Minocycline</td>\n", - " <td>≤ 4</td>\n", - " <td>≥ 16</td>\n", - " <td>8</td>\n", - " </tr>\n", - " </tbody>\n", - "</table>\n", - "</div>" - ], - "text/plain": [ - " Antibiotics Susceptible Resistant Intermediate\n", - "0 Amikacin ≤ 16 ≥ 64 32\n", - "1 Tobramycin ≤ 4 ≥ 16 8\n", - "2 Gentamicin ≤ 4 ≥ 16 8\n", - "3 Netilmicin ≤ 8 ≥ 32 16\n", - "4 Imipenem ≤ 2 ≥ 8 4\n", - "5 Meropenem ≤ 2 ≥ 8 4\n", - "6 Doripenem ≤ 2 ≥ 8 4\n", - "7 Ciprofloxacin ≤ 1 ≥ 4 2\n", - "8 Levofloxacin ≤ 2 ≥ 8 4\n", - "9 Piperacillin/ tazobactam ≤ 16/4 ≥ 128/4 32/4-64/4\n", - "10 Ticarcillin/ clavulanic acid ≤ 16/2 ≥ 128/2 32/2-64/2\n", - "11 Cefotaxime ≤ 8 ≥ 64 16-32\n", - "12 Ceftriaxone ≤ 8 ≥ 64 16-32\n", - "13 Ceftazidime ≤ 8 ≥ 32 16\n", - "14 Cefepime ≤ 8 ≥ 32 16\n", - "15 Trimethoprim/ sulfamethoxazole ≤ 2/38 ≥ 4/76 -\n", - "16 Ampicillin/ sulbactam ≤ 8/4 ≥ 32/16 16/8\n", - "17 Colistin - ≥ 4 ≤ 2\n", - "18 Polymyxin B - ≥ 4 ≤ 2\n", - "19 Tetracycline ≤ 4 ≥ 16 8\n", - "20 Doxycycline ≤ 4 ≥ 16 8\n", - "21 Minocycline ≤ 4 ≥ 16 8" - ] - }, - "execution_count": 10, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "clsi_bp\n", - "#strain_mic" - ] - }, - { - "cell_type": "code", - "execution_count": 19, - "id": "860505f7", - "metadata": {}, - "outputs": [], - "source": [ - "# convert MIC to numbers sMIC, rMIC\n", - "clsi_bp['s_mic'] =clsi_bp[['Susceptible']].applymap(lambda x: (re.sub(r'[^0-9.\\/-]', '', x)))\n", - "clsi_bp['r_mic'] =clsi_bp[['Resistant']].applymap(lambda x: (re.sub(r'[^0-9.\\/-]', '', x)))\n", - "clsi_bp['i_mic'] = clsi_bp[['Intermediate']].applymap(lambda x: (re.sub(r'[^0-9.\\/-]', '', x)))" - ] - }, - { - "cell_type": "code", - "execution_count": 20, - "id": "cad964a6", - "metadata": {}, - "outputs": [], - "source": [ - "#clsi_bp['i_mic'] = clsi_bp[['Intermediate']].applymap(lambda x: (re.sub(r'[^0-9.\\/-]', '', x)))" - ] - }, - { - "cell_type": "code", - "execution_count": 21, - "id": "2b6c02f5", - "metadata": {}, - "outputs": [], - "source": [ - "# Read only numbers in MIC values\n", - "#try:\n", - "strain_mic['o_mic']=strain_mic[['MIC']].applymap(lambda x: (re.sub(r'[^0-9.\\/]','', x)))\n", - "#except TypeError:\n", - "# print('Waring: Error in MIC value')" - ] - }, - { - "cell_type": "code", - "execution_count": 22, - "id": "942fefb2", - "metadata": {}, - "outputs": [ - { - "data": { - "text/html": [ - "<div>\n", - "<style scoped>\n", - " .dataframe tbody tr th:only-of-type {\n", - " vertical-align: middle;\n", - " }\n", - "\n", - " .dataframe tbody tr th {\n", - " vertical-align: top;\n", - " }\n", - "\n", - " .dataframe thead th {\n", - " text-align: right;\n", - " }\n", - "</style>\n", - "<table border=\"1\" class=\"dataframe\">\n", - " <thead>\n", - " <tr style=\"text-align: right;\">\n", - " <th></th>\n", - " <th>Strain name</th>\n", - " <th>Antibiotics</th>\n", - " <th>MIC</th>\n", - " <th>o_mic</th>\n", - " </tr>\n", - " </thead>\n", - " <tbody>\n", - " <tr>\n", - " <th>0</th>\n", - " <td>Acinetobacter baumannii A85</td>\n", - " <td>Colistin</td>\n", - " <td>0.1</td>\n", - " <td>0.1</td>\n", - " </tr>\n", - " <tr>\n", - " <th>1</th>\n", - " <td>Acinetobacter baumannii A85</td>\n", - " <td>Colistin</td>\n", - " <td>1</td>\n", - " <td>1</td>\n", - " </tr>\n", - " <tr>\n", - " <th>2</th>\n", - " <td>Acinetobacter baumannii A85</td>\n", - " <td>Colistin</td>\n", - " <td>2</td>\n", - " <td>2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>3</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Ampicillin</td>\n", - " <td>0</td>\n", - " <td>0</td>\n", - " </tr>\n", - " <tr>\n", - " <th>4</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Ampicillin/sulbactam</td>\n", - " <td>mg/L</td>\n", - " <td>/</td>\n", - " </tr>\n", - " <tr>\n", - " <th>5</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Piperacillin/tazobactam</td>\n", - " <td>0</td>\n", - " <td>0</td>\n", - " </tr>\n", - " <tr>\n", - " <th>6</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Cefazolin</td>\n", - " <td>64</td>\n", - " <td>64</td>\n", - " </tr>\n", - " <tr>\n", - " <th>7</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Ceftriaxone</td>\n", - " <td>16</td>\n", - " <td>16</td>\n", - " </tr>\n", - " <tr>\n", - " <th>8</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Cefepime</td>\n", - " <td>8</td>\n", - " <td>8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>9</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Meropenem</td>\n", - " <td>0.25</td>\n", - " <td>0.25</td>\n", - " </tr>\n", - " <tr>\n", - " <th>10</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Imipenem</td>\n", - " <td>1</td>\n", - " <td>1</td>\n", - " </tr>\n", - " <tr>\n", - " <th>11</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Tigecycline</td>\n", - " <td>0.5</td>\n", - " <td>0.5</td>\n", - " </tr>\n", - " <tr>\n", - " <th>12</th>\n", - " <td>Acinetobacter baumannii AB5075-UW</td>\n", - " <td>Ceftazidime</td>\n", - " <td>>128</td>\n", - " <td>128</td>\n", - " </tr>\n", - " <tr>\n", - " <th>13</th>\n", - " <td>Acinetobacter baumannii AB5075-UW</td>\n", - " <td>Cefepime</td>\n", - " <td>>256</td>\n", - " <td>256</td>\n", - " </tr>\n", - " <tr>\n", - " <th>14</th>\n", - " <td>Acinetobacter baumannii AB5075-UW</td>\n", - " <td>Ciprofloxacin</td>\n", - " <td>>32</td>\n", - " <td>32</td>\n", - " </tr>\n", - " <tr>\n", - " <th>15</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Colistin</td>\n", - " <td></td>\n", - " <td></td>\n", - " </tr>\n", - " <tr>\n", - " <th>16</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Trimethoprim/sulfamethoxazole</td>\n", - " <td>8/152</td>\n", - " <td>8/152</td>\n", - " </tr>\n", - " <tr>\n", - " <th>17</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Ampicillin/sulbactam</td>\n", - " <td>>=0.3 mg/L</td>\n", - " <td>0.3/</td>\n", - " </tr>\n", - " <tr>\n", - " <th>18</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Ticarcillin/clavulanicacid</td>\n", - " <td>>=128/2</td>\n", - " <td>128/2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>19</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Piperacillin/tazobactam</td>\n", - " <td>NA</td>\n", - " <td></td>\n", - " </tr>\n", - " <tr>\n", - " <th>20</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Trimethoprim/sulfamethoxazole</td>\n", - " <td>8/152</td>\n", - " <td>8/152</td>\n", - " </tr>\n", - " <tr>\n", - " <th>21</th>\n", - " <td>Acinetobacter baumannii ORAB01</td>\n", - " <td>Piperacillin/tazobactam</td>\n", - " <td>>64/4</td>\n", - " <td>64/4</td>\n", - " </tr>\n", - " <tr>\n", - " <th>22</th>\n", - " <td>Acinetobacter baumannii strain MRSN7100</td>\n", - " <td>Amoxicillin/clavulanicacid</td>\n", - " <td>16/8</td>\n", - " <td>16/8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>23</th>\n", - " <td>Acinetobacter baumannii strain MRSN7168</td>\n", - " <td>Amoxicillin/clavulanicacid</td>\n", - " <td>16/8</td>\n", - " <td>16/8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>24</th>\n", - " <td>Acinetobacter baumannii strain MRSN7336</td>\n", - " <td>Amoxicillin/clavulanicacid</td>\n", - " <td>16/8</td>\n", - " <td>16/8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>25</th>\n", - " <td>Acinetobacter baumannii strain MRSN7834</td>\n", - " <td>Amoxicillin/clavulanicacid</td>\n", - " <td>16/8</td>\n", - " <td>16/8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>26</th>\n", - " <td>Acinetobacter baumannii strain FDA-CDC-AR_0305</td>\n", - " <td>Polymyxinb</td>\n", - " <td>1</td>\n", - " <td>1</td>\n", - " </tr>\n", - " <tr>\n", - " <th>27</th>\n", - " <td>Acinetobacter baumannii strain FDA-CDC-AR_0306</td>\n", - " <td>Polymyxinb</td>\n", - " <td>1</td>\n", - " <td>1</td>\n", - " </tr>\n", - " <tr>\n", - " <th>28</th>\n", - " <td>Acinetobacter baumannii strain FDA-CDC-AR_0307</td>\n", - " <td>Polymyxinb</td>\n", - " <td>8</td>\n", - " <td>8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>29</th>\n", - " <td>Acinetobacter baumannii strain FDA-CDC-AR_0308</td>\n", - " <td>Polymyxinb</td>\n", - " <td>4</td>\n", - " <td>4</td>\n", - " </tr>\n", - " </tbody>\n", - "</table>\n", - "</div>" - ], - "text/plain": [ - " Strain name \\\n", - "0 Acinetobacter baumannii A85 \n", - "1 Acinetobacter baumannii A85 \n", - "2 Acinetobacter baumannii A85 \n", - "3 Acinetobacter baumannii AB307-0294 \n", - "4 Acinetobacter baumannii AB307-0294 \n", - "5 Acinetobacter baumannii AB307-0294 \n", - "6 Acinetobacter baumannii AB307-0294 \n", - "7 Acinetobacter baumannii AB307-0294 \n", - "8 Acinetobacter baumannii AB307-0294 \n", - "9 Acinetobacter baumannii AB307-0294 \n", - "10 Acinetobacter baumannii AB307-0294 \n", - "11 Acinetobacter baumannii AB307-0294 \n", - "12 Acinetobacter baumannii AB5075-UW \n", - "13 Acinetobacter baumannii AB5075-UW \n", - "14 Acinetobacter baumannii AB5075-UW \n", - "15 Acinetobacter baumannii DU202 \n", - "16 Acinetobacter baumannii DU202 \n", - "17 Acinetobacter baumannii DU202 \n", - "18 Acinetobacter baumannii DU202 \n", - "19 Acinetobacter baumannii DU202 \n", - "20 Acinetobacter baumannii DU202 \n", - "21 Acinetobacter baumannii ORAB01 \n", - "22 Acinetobacter baumannii strain MRSN7100 \n", - "23 Acinetobacter baumannii strain MRSN7168 \n", - "24 Acinetobacter baumannii strain MRSN7336 \n", - "25 Acinetobacter baumannii strain MRSN7834 \n", - "26 Acinetobacter baumannii strain FDA-CDC-AR_0305 \n", - "27 Acinetobacter baumannii strain FDA-CDC-AR_0306 \n", - "28 Acinetobacter baumannii strain FDA-CDC-AR_0307 \n", - "29 Acinetobacter baumannii strain FDA-CDC-AR_0308 \n", - "\n", - " Antibiotics MIC o_mic \n", - "0 Colistin 0.1 0.1 \n", - "1 Colistin 1 1 \n", - "2 Colistin 2 2 \n", - "3 Ampicillin 0 0 \n", - "4 Ampicillin/sulbactam mg/L / \n", - "5 Piperacillin/tazobactam 0 0 \n", - "6 Cefazolin 64 64 \n", - "7 Ceftriaxone 16 16 \n", - "8 Cefepime 8 8 \n", - "9 Meropenem 0.25 0.25 \n", - "10 Imipenem 1 1 \n", - "11 Tigecycline 0.5 0.5 \n", - "12 Ceftazidime >128 128 \n", - "13 Cefepime >256 256 \n", - "14 Ciprofloxacin >32 32 \n", - "15 Colistin \n", - "16 Trimethoprim/sulfamethoxazole 8/152 8/152 \n", - "17 Ampicillin/sulbactam >=0.3 mg/L 0.3/ \n", - "18 Ticarcillin/clavulanicacid >=128/2 128/2 \n", - "19 Piperacillin/tazobactam NA \n", - "20 Trimethoprim/sulfamethoxazole 8/152 8/152 \n", - "21 Piperacillin/tazobactam >64/4 64/4 \n", - "22 Amoxicillin/clavulanicacid 16/8 16/8 \n", - "23 Amoxicillin/clavulanicacid 16/8 16/8 \n", - "24 Amoxicillin/clavulanicacid 16/8 16/8 \n", - "25 Amoxicillin/clavulanicacid 16/8 16/8 \n", - "26 Polymyxinb 1 1 \n", - "27 Polymyxinb 1 1 \n", - "28 Polymyxinb 8 8 \n", - "29 Polymyxinb 4 4 " - ] - }, - "execution_count": 22, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "strain_mic" - ] - }, - { - "cell_type": "code", - "execution_count": 23, - "id": "bba6b0a2", - "metadata": {}, - "outputs": [], - "source": [ - "# capitalize each Antibiotic Name for comparision with removing whitespace\n", - "strain_mic['Antibiotics']=strain_mic['Antibiotics'].str.capitalize().str.replace(\" \",\"\")\n", - "clsi_bp['Antibiotics']=clsi_bp['Antibiotics'].str.capitalize().str.replace(\" \",\"\")" - ] - }, - { - "cell_type": "code", - "execution_count": 53, - "id": "ea403928", - "metadata": {}, - "outputs": [ - { - "data": { - "text/html": [ - "<div>\n", - "<style scoped>\n", - " .dataframe tbody tr th:only-of-type {\n", - " vertical-align: middle;\n", - " }\n", - "\n", - " .dataframe tbody tr th {\n", - " vertical-align: top;\n", - " }\n", - "\n", - " .dataframe thead th {\n", - " text-align: right;\n", - " }\n", - "</style>\n", - "<table border=\"1\" class=\"dataframe\">\n", - " <thead>\n", - " <tr style=\"text-align: right;\">\n", - " <th></th>\n", - " <th>Strain name</th>\n", - " <th>Antibiotics</th>\n", - " <th>MIC</th>\n", - " <th>o_mic</th>\n", - " <th>s_mic</th>\n", - " <th>r_mic</th>\n", - " <th>i_mic</th>\n", - " </tr>\n", - " </thead>\n", - " <tbody>\n", - " <tr>\n", - " <th>0</th>\n", - " <td>Acinetobacter baumannii A85</td>\n", - " <td>Colistin</td>\n", - " <td>0.1</td>\n", - " <td>0.1</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>1</th>\n", - " <td>Acinetobacter baumannii A85</td>\n", - " <td>Colistin</td>\n", - " <td>1</td>\n", - " <td>1</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>2</th>\n", - " <td>Acinetobacter baumannii A85</td>\n", - " <td>Colistin</td>\n", - " <td>2</td>\n", - " <td>2</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>3</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Colistin</td>\n", - " <td></td>\n", - " <td></td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>4</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Ampicillin/sulbactam</td>\n", - " <td>mg/L</td>\n", - " <td>/</td>\n", - " <td>8/4</td>\n", - " <td>32/16</td>\n", - " <td>16/8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>5</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Ampicillin/sulbactam</td>\n", - " <td>>=0.3 mg/L</td>\n", - " <td>0.3/</td>\n", - " <td>8/4</td>\n", - " <td>32/16</td>\n", - " <td>16/8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>6</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Piperacillin/tazobactam</td>\n", - " <td>0</td>\n", - " <td>0</td>\n", - " <td>16/4</td>\n", - " <td>128/4</td>\n", - " <td>32/4-64/4</td>\n", - " </tr>\n", - " <tr>\n", - " <th>7</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Piperacillin/tazobactam</td>\n", - " <td>NA</td>\n", - " <td></td>\n", - " <td>16/4</td>\n", - " <td>128/4</td>\n", - " <td>32/4-64/4</td>\n", - " </tr>\n", - " <tr>\n", - " <th>8</th>\n", - " <td>Acinetobacter baumannii ORAB01</td>\n", - " <td>Piperacillin/tazobactam</td>\n", - " <td>>64/4</td>\n", - " <td>64/4</td>\n", - " <td>16/4</td>\n", - " <td>128/4</td>\n", - " <td>32/4-64/4</td>\n", - " </tr>\n", - " <tr>\n", - " <th>9</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Ceftriaxone</td>\n", - " <td>16</td>\n", - " <td>16</td>\n", - " <td>8</td>\n", - " <td>64</td>\n", - " <td>16-32</td>\n", - " </tr>\n", - " <tr>\n", - " <th>10</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Cefepime</td>\n", - " <td>8</td>\n", - " <td>8</td>\n", - " <td>8</td>\n", - " <td>32</td>\n", - " <td>16</td>\n", - " </tr>\n", - " <tr>\n", - " <th>11</th>\n", - " <td>Acinetobacter baumannii AB5075-UW</td>\n", - " <td>Cefepime</td>\n", - " <td>>256</td>\n", - " <td>256</td>\n", - " <td>8</td>\n", - " <td>32</td>\n", - " <td>16</td>\n", - " </tr>\n", - " <tr>\n", - " <th>12</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Meropenem</td>\n", - " <td>0.25</td>\n", - " <td>0.25</td>\n", - " <td>2</td>\n", - " <td>8</td>\n", - " <td>4</td>\n", - " </tr>\n", - " <tr>\n", - " <th>13</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Imipenem</td>\n", - " <td>1</td>\n", - " <td>1</td>\n", - " <td>2</td>\n", - " <td>8</td>\n", - " <td>4</td>\n", - " </tr>\n", - " <tr>\n", - " <th>14</th>\n", - " <td>Acinetobacter baumannii AB5075-UW</td>\n", - " <td>Ceftazidime</td>\n", - " <td>>128</td>\n", - " <td>128</td>\n", - " <td>8</td>\n", - " <td>32</td>\n", - " <td>16</td>\n", - " </tr>\n", - " <tr>\n", - " <th>15</th>\n", - " <td>Acinetobacter baumannii AB5075-UW</td>\n", - " <td>Ciprofloxacin</td>\n", - " <td>>32</td>\n", - " <td>32</td>\n", - " <td>1</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>16</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Trimethoprim/sulfamethoxazole</td>\n", - " <td>8/152</td>\n", - " <td>8/152</td>\n", - " <td>2/38</td>\n", - " <td>4/76</td>\n", - " <td>-</td>\n", - " </tr>\n", - " <tr>\n", - " <th>17</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Trimethoprim/sulfamethoxazole</td>\n", - " <td>8/152</td>\n", - " <td>8/152</td>\n", - " <td>2/38</td>\n", - " <td>4/76</td>\n", - " <td>-</td>\n", - " </tr>\n", - " <tr>\n", - " <th>18</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Ticarcillin/clavulanicacid</td>\n", - " <td>>=128/2</td>\n", - " <td>128/2</td>\n", - " <td>16/2</td>\n", - " <td>128/2</td>\n", - " <td>32/2-64/2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>19</th>\n", - " <td>Acinetobacter baumannii strain FDA-CDC-AR_0305</td>\n", - " <td>Polymyxinb</td>\n", - " <td>1</td>\n", - " <td>1</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>20</th>\n", - " <td>Acinetobacter baumannii strain FDA-CDC-AR_0306</td>\n", - " <td>Polymyxinb</td>\n", - " <td>1</td>\n", - " <td>1</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>21</th>\n", - " <td>Acinetobacter baumannii strain FDA-CDC-AR_0307</td>\n", - " <td>Polymyxinb</td>\n", - " <td>8</td>\n", - " <td>8</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>22</th>\n", - " <td>Acinetobacter baumannii strain FDA-CDC-AR_0308</td>\n", - " <td>Polymyxinb</td>\n", - " <td>4</td>\n", - " <td>4</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " </tr>\n", - " </tbody>\n", - "</table>\n", - "</div>" - ], - "text/plain": [ - " Strain name \\\n", - "0 Acinetobacter baumannii A85 \n", - "1 Acinetobacter baumannii A85 \n", - "2 Acinetobacter baumannii A85 \n", - "3 Acinetobacter baumannii DU202 \n", - "4 Acinetobacter baumannii AB307-0294 \n", - "5 Acinetobacter baumannii DU202 \n", - "6 Acinetobacter baumannii AB307-0294 \n", - "7 Acinetobacter baumannii DU202 \n", - "8 Acinetobacter baumannii ORAB01 \n", - "9 Acinetobacter baumannii AB307-0294 \n", - "10 Acinetobacter baumannii AB307-0294 \n", - "11 Acinetobacter baumannii AB5075-UW \n", - "12 Acinetobacter baumannii AB307-0294 \n", - "13 Acinetobacter baumannii AB307-0294 \n", - "14 Acinetobacter baumannii AB5075-UW \n", - "15 Acinetobacter baumannii AB5075-UW \n", - "16 Acinetobacter baumannii DU202 \n", - "17 Acinetobacter baumannii DU202 \n", - "18 Acinetobacter baumannii DU202 \n", - "19 Acinetobacter baumannii strain FDA-CDC-AR_0305 \n", - "20 Acinetobacter baumannii strain FDA-CDC-AR_0306 \n", - "21 Acinetobacter baumannii strain FDA-CDC-AR_0307 \n", - "22 Acinetobacter baumannii strain FDA-CDC-AR_0308 \n", - "\n", - " Antibiotics MIC o_mic s_mic r_mic i_mic \n", - "0 Colistin 0.1 0.1 - 4 2 \n", - "1 Colistin 1 1 - 4 2 \n", - "2 Colistin 2 2 - 4 2 \n", - "3 Colistin - 4 2 \n", - "4 Ampicillin/sulbactam mg/L / 8/4 32/16 16/8 \n", - "5 Ampicillin/sulbactam >=0.3 mg/L 0.3/ 8/4 32/16 16/8 \n", - "6 Piperacillin/tazobactam 0 0 16/4 128/4 32/4-64/4 \n", - "7 Piperacillin/tazobactam NA 16/4 128/4 32/4-64/4 \n", - "8 Piperacillin/tazobactam >64/4 64/4 16/4 128/4 32/4-64/4 \n", - "9 Ceftriaxone 16 16 8 64 16-32 \n", - "10 Cefepime 8 8 8 32 16 \n", - "11 Cefepime >256 256 8 32 16 \n", - "12 Meropenem 0.25 0.25 2 8 4 \n", - "13 Imipenem 1 1 2 8 4 \n", - "14 Ceftazidime >128 128 8 32 16 \n", - "15 Ciprofloxacin >32 32 1 4 2 \n", - "16 Trimethoprim/sulfamethoxazole 8/152 8/152 2/38 4/76 - \n", - "17 Trimethoprim/sulfamethoxazole 8/152 8/152 2/38 4/76 - \n", - "18 Ticarcillin/clavulanicacid >=128/2 128/2 16/2 128/2 32/2-64/2 \n", - "19 Polymyxinb 1 1 - 4 2 \n", - "20 Polymyxinb 1 1 - 4 2 \n", - "21 Polymyxinb 8 8 - 4 2 \n", - "22 Polymyxinb 4 4 - 4 2 " - ] - }, - "execution_count": 53, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "#compare CLSI Antibiotics only\n", - "#result=pd.merge(strain_mic, clsi_bp, on='Antibiotics',how='inner', indicator=True)[['Strain name','Antibiotics', 'MIC', 'o_mic', 's_mic', 'r_mic','_merge']]\n", - "try:\n", - " result=pd.merge(strain_mic, clsi_bp, on='Antibiotics',how='inner')[['Strain name','Antibiotics', 'MIC', 'o_mic', 's_mic', 'r_mic','i_mic']]\n", - "except KeyError:\n", - " print('Waring: Error in input Values')\n", - "result" - ] - }, - { - "cell_type": "code", - "execution_count": 44, - "id": "44f7e35d", - "metadata": {}, - "outputs": [ - { - "ename": "ValueError", - "evalue": "could not broadcast input array from shape (23,) into shape (23,1)", - "output_type": "error", - "traceback": [ - "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", - "\u001b[0;31mValueError\u001b[0m Traceback (most recent call last)", - "\u001b[0;32m<ipython-input-44-76a7d8475ba3>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[0;31m#compare MIC values and assign Susceptible and Resistant to Strain\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 2\u001b[0m \u001b[0;31m#try:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m----> 3\u001b[0;31m \u001b[0mresult\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m'CLSI_profile'\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mresult\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m'o_mic'\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m's_mic'\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m'r_mic'\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m'i_mic'\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mapply\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0msus_res\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0maxis\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;36m1\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 4\u001b[0m \u001b[0;31m#except ValueError:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 5\u001b[0m \u001b[0;31m# print('Waring: Error in input MIC value')\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", - "\u001b[0;32m~/miniconda3/lib/python3.9/site-packages/pandas/core/frame.py\u001b[0m in \u001b[0;36m__setitem__\u001b[0;34m(self, key, value)\u001b[0m\n\u001b[1;32m 3158\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_setitem_frame\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mkey\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mvalue\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 3159\u001b[0m \u001b[0;32melif\u001b[0m \u001b[0misinstance\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mkey\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m(\u001b[0m\u001b[0mSeries\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mnp\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mndarray\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mlist\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mIndex\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 3160\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_setitem_array\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mkey\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mvalue\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 3161\u001b[0m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 3162\u001b[0m \u001b[0;31m# set column\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", - "\u001b[0;32m~/miniconda3/lib/python3.9/site-packages/pandas/core/frame.py\u001b[0m in \u001b[0;36m_setitem_array\u001b[0;34m(self, key, value)\u001b[0m\n\u001b[1;32m 3196\u001b[0m )[1]\n\u001b[1;32m 3197\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_check_setitem_copy\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 3198\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0miloc\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mindexer\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mvalue\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 3199\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 3200\u001b[0m \u001b[0;32mdef\u001b[0m \u001b[0m_setitem_frame\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mkey\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mvalue\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", - "\u001b[0;32m~/miniconda3/lib/python3.9/site-packages/pandas/core/indexing.py\u001b[0m in \u001b[0;36m__setitem__\u001b[0;34m(self, key, value)\u001b[0m\n\u001b[1;32m 690\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 691\u001b[0m \u001b[0miloc\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mname\u001b[0m \u001b[0;34m==\u001b[0m \u001b[0;34m\"iloc\"\u001b[0m \u001b[0;32melse\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mobj\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0miloc\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 692\u001b[0;31m \u001b[0miloc\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_setitem_with_indexer\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mindexer\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mvalue\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mname\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 693\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 694\u001b[0m \u001b[0;32mdef\u001b[0m \u001b[0m_validate_key\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mkey\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0maxis\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0mint\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", - "\u001b[0;32m~/miniconda3/lib/python3.9/site-packages/pandas/core/indexing.py\u001b[0m in \u001b[0;36m_setitem_with_indexer\u001b[0;34m(self, indexer, value, name)\u001b[0m\n\u001b[1;32m 1635\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_setitem_with_indexer_split_path\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mindexer\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mvalue\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mname\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1636\u001b[0m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1637\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_setitem_single_block\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mindexer\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mvalue\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mname\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1638\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1639\u001b[0m \u001b[0;32mdef\u001b[0m \u001b[0m_setitem_with_indexer_split_path\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mindexer\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mvalue\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mname\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0mstr\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", - "\u001b[0;32m~/miniconda3/lib/python3.9/site-packages/pandas/core/indexing.py\u001b[0m in \u001b[0;36m_setitem_single_block\u001b[0;34m(self, indexer, value, name)\u001b[0m\n\u001b[1;32m 1859\u001b[0m \u001b[0;31m# actually do the set\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1860\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mobj\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_consolidate_inplace\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1861\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mobj\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_mgr\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mobj\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_mgr\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0msetitem\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mindexer\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mindexer\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mvalue\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mvalue\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1862\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mobj\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_maybe_update_cacher\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mclear\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;32mTrue\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1863\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", - "\u001b[0;32m~/miniconda3/lib/python3.9/site-packages/pandas/core/internals/managers.py\u001b[0m in \u001b[0;36msetitem\u001b[0;34m(self, indexer, value)\u001b[0m\n\u001b[1;32m 566\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 567\u001b[0m \u001b[0;32mdef\u001b[0m \u001b[0msetitem\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mindexer\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mvalue\u001b[0m\u001b[0;34m)\u001b[0m \u001b[0;34m->\u001b[0m \u001b[0;34m\"BlockManager\"\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 568\u001b[0;31m \u001b[0;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mapply\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m\"setitem\"\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mindexer\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mindexer\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mvalue\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mvalue\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 569\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 570\u001b[0m \u001b[0;32mdef\u001b[0m \u001b[0mputmask\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mmask\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mnew\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0malign\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0mbool\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;32mTrue\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0maxis\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0mint\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;36m0\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", - "\u001b[0;32m~/miniconda3/lib/python3.9/site-packages/pandas/core/internals/managers.py\u001b[0m in \u001b[0;36mapply\u001b[0;34m(self, f, align_keys, ignore_failures, **kwargs)\u001b[0m\n\u001b[1;32m 425\u001b[0m \u001b[0mapplied\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mb\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mapply\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mf\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 426\u001b[0m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 427\u001b[0;31m \u001b[0mapplied\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mgetattr\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mb\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mf\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 428\u001b[0m \u001b[0;32mexcept\u001b[0m \u001b[0;34m(\u001b[0m\u001b[0mTypeError\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mNotImplementedError\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 429\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0;32mnot\u001b[0m \u001b[0mignore_failures\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", - "\u001b[0;32m~/miniconda3/lib/python3.9/site-packages/pandas/core/internals/blocks.py\u001b[0m in \u001b[0;36msetitem\u001b[0;34m(self, indexer, value)\u001b[0m\n\u001b[1;32m 1033\u001b[0m \u001b[0;31m# set\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1034\u001b[0m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1035\u001b[0;31m \u001b[0mvalues\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0mindexer\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mvalue\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1036\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1037\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mtranspose\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", - "\u001b[0;31mValueError\u001b[0m: could not broadcast input array from shape (23,) into shape (23,1)" - ] - } - ], - "source": [ - "#compare MIC values and assign Susceptible and Resistant to Strain\n", - "#try:\n", - "result[['CLSI_profile']] = result[['o_mic','s_mic','r_mic','i_mic']].apply(sus_res,axis = 1)\n", - "#except ValueError:\n", - "# print('Waring: Error in input MIC value')" - ] - }, - { - "cell_type": "code", - "execution_count": 61, - "id": "30c2a7a3", - "metadata": {}, - "outputs": [ - { - "data": { - "text/html": [ - "<div>\n", - "<style scoped>\n", - " .dataframe tbody tr th:only-of-type {\n", - " vertical-align: middle;\n", - " }\n", - "\n", - " .dataframe tbody tr th {\n", - " vertical-align: top;\n", - " }\n", - "\n", - " .dataframe thead th {\n", - " text-align: right;\n", - " }\n", - "</style>\n", - "<table border=\"1\" class=\"dataframe\">\n", - " <thead>\n", - " <tr style=\"text-align: right;\">\n", - " <th></th>\n", - " <th>Strain name</th>\n", - " <th>Antibiotics</th>\n", - " <th>MIC</th>\n", - " <th>o_mic</th>\n", - " <th>s_mic</th>\n", - " <th>r_mic</th>\n", - " <th>i_mic</th>\n", - " <th>CLSI_profile</th>\n", - " </tr>\n", - " </thead>\n", - " <tbody>\n", - " <tr>\n", - " <th>0</th>\n", - " <td>Acinetobacter baumannii A85</td>\n", - " <td>Colistin</td>\n", - " <td>0.1</td>\n", - " <td>0.1</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " <td>Intermediate</td>\n", - " </tr>\n", - " <tr>\n", - " <th>1</th>\n", - " <td>Acinetobacter baumannii A85</td>\n", - " <td>Colistin</td>\n", - " <td>1</td>\n", - " <td>1</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " <td>Intermediate</td>\n", - " </tr>\n", - " <tr>\n", - " <th>2</th>\n", - " <td>Acinetobacter baumannii A85</td>\n", - " <td>Colistin</td>\n", - " <td>2</td>\n", - " <td>2</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " <td>IntermediatE</td>\n", - " </tr>\n", - " <tr>\n", - " <th>3</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Colistin</td>\n", - " <td></td>\n", - " <td></td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " <td>Strain could not classified</td>\n", - " </tr>\n", - " <tr>\n", - " <th>4</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Ampicillin/sulbactam</td>\n", - " <td>mg/L</td>\n", - " <td>/</td>\n", - " <td>8/4</td>\n", - " <td>32/16</td>\n", - " <td>16/8</td>\n", - " <td>Strain could not classified</td>\n", - " </tr>\n", - " <tr>\n", - " <th>5</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Ampicillin/sulbactam</td>\n", - " <td>>=0.3 mg/L</td>\n", - " <td>0.3/</td>\n", - " <td>8/4</td>\n", - " <td>32/16</td>\n", - " <td>16/8</td>\n", - " <td>Strain could not classified</td>\n", - " </tr>\n", - " <tr>\n", - " <th>6</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Piperacillin/tazobactam</td>\n", - " <td>0</td>\n", - " <td>0</td>\n", - " <td>16/4</td>\n", - " <td>128/4</td>\n", - " <td>32/4-64/4</td>\n", - " <td>Strain could not classified</td>\n", - " </tr>\n", - " <tr>\n", - " <th>7</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Piperacillin/tazobactam</td>\n", - " <td>NA</td>\n", - " <td></td>\n", - " <td>16/4</td>\n", - " <td>128/4</td>\n", - " <td>32/4-64/4</td>\n", - " <td>Strain could not classified</td>\n", - " </tr>\n", - " <tr>\n", - " <th>8</th>\n", - " <td>Acinetobacter baumannii ORAB01</td>\n", - " <td>Piperacillin/tazobactam</td>\n", - " <td>>64/4</td>\n", - " <td>64/4</td>\n", - " <td>16/4</td>\n", - " <td>128/4</td>\n", - " <td>32/4-64/4</td>\n", - " <td>Intermediate</td>\n", - " </tr>\n", - " <tr>\n", - " <th>9</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Ceftriaxone</td>\n", - " <td>16</td>\n", - " <td>16</td>\n", - " <td>8</td>\n", - " <td>64</td>\n", - " <td>16-32</td>\n", - " <td>Intermediate</td>\n", - " </tr>\n", - " <tr>\n", - " <th>10</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Cefepime</td>\n", - " <td>8</td>\n", - " <td>8</td>\n", - " <td>8</td>\n", - " <td>32</td>\n", - " <td>16</td>\n", - " <td>Susceptible</td>\n", - " </tr>\n", - " <tr>\n", - " <th>11</th>\n", - " <td>Acinetobacter baumannii AB5075-UW</td>\n", - " <td>Cefepime</td>\n", - " <td>>256</td>\n", - " <td>256</td>\n", - " <td>8</td>\n", - " <td>32</td>\n", - " <td>16</td>\n", - " <td>Resistant</td>\n", - " </tr>\n", - " <tr>\n", - " <th>12</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Meropenem</td>\n", - " <td>0.25</td>\n", - " <td>0.25</td>\n", - " <td>2</td>\n", - " <td>8</td>\n", - " <td>4</td>\n", - " <td>Susceptible</td>\n", - " </tr>\n", - " <tr>\n", - " <th>13</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Imipenem</td>\n", - " <td>1</td>\n", - " <td>1</td>\n", - " <td>2</td>\n", - " <td>8</td>\n", - " <td>4</td>\n", - " <td>Susceptible</td>\n", - " </tr>\n", - " <tr>\n", - " <th>14</th>\n", - " <td>Acinetobacter baumannii AB5075-UW</td>\n", - " <td>Ceftazidime</td>\n", - " <td>>128</td>\n", - " <td>128</td>\n", - " <td>8</td>\n", - " <td>32</td>\n", - " <td>16</td>\n", - " <td>Resistant</td>\n", - " </tr>\n", - " <tr>\n", - " <th>15</th>\n", - " <td>Acinetobacter baumannii AB5075-UW</td>\n", - " <td>Ciprofloxacin</td>\n", - " <td>>32</td>\n", - " <td>32</td>\n", - " <td>1</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " <td>Resistant</td>\n", - " </tr>\n", - " <tr>\n", - " <th>16</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Trimethoprim/sulfamethoxazole</td>\n", - " <td>8/152</td>\n", - " <td>8/152</td>\n", - " <td>2/38</td>\n", - " <td>4/76</td>\n", - " <td>-</td>\n", - " <td>Resistant</td>\n", - " </tr>\n", - " <tr>\n", - " <th>17</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Trimethoprim/sulfamethoxazole</td>\n", - " <td>8/152</td>\n", - " <td>8/152</td>\n", - " <td>2/38</td>\n", - " <td>4/76</td>\n", - " <td>-</td>\n", - " <td>Resistant</td>\n", - " </tr>\n", - " <tr>\n", - " <th>18</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Ticarcillin/clavulanicacid</td>\n", - " <td>>=128/2</td>\n", - " <td>128/2</td>\n", - " <td>16/2</td>\n", - " <td>128/2</td>\n", - " <td>32/2-64/2</td>\n", - " <td>Resistant</td>\n", - " </tr>\n", - " <tr>\n", - " <th>19</th>\n", - " <td>Acinetobacter baumannii strain FDA-CDC-AR_0305</td>\n", - " <td>Polymyxinb</td>\n", - " <td>1</td>\n", - " <td>1</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " <td>Intermediate</td>\n", - " </tr>\n", - " <tr>\n", - " <th>20</th>\n", - " <td>Acinetobacter baumannii strain FDA-CDC-AR_0306</td>\n", - " <td>Polymyxinb</td>\n", - " <td>1</td>\n", - " <td>1</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " <td>Intermediate</td>\n", - " </tr>\n", - " <tr>\n", - " <th>21</th>\n", - " <td>Acinetobacter baumannii strain FDA-CDC-AR_0307</td>\n", - " <td>Polymyxinb</td>\n", - " <td>8</td>\n", - " <td>8</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " <td>Resistant</td>\n", - " </tr>\n", - " <tr>\n", - " <th>22</th>\n", - " <td>Acinetobacter baumannii strain FDA-CDC-AR_0308</td>\n", - " <td>Polymyxinb</td>\n", - " <td>4</td>\n", - " <td>4</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " <td>Resistant</td>\n", - " </tr>\n", - " </tbody>\n", - "</table>\n", - "</div>" - ], - "text/plain": [ - " Strain name \\\n", - "0 Acinetobacter baumannii A85 \n", - "1 Acinetobacter baumannii A85 \n", - "2 Acinetobacter baumannii A85 \n", - "3 Acinetobacter baumannii DU202 \n", - "4 Acinetobacter baumannii AB307-0294 \n", - "5 Acinetobacter baumannii DU202 \n", - "6 Acinetobacter baumannii AB307-0294 \n", - "7 Acinetobacter baumannii DU202 \n", - "8 Acinetobacter baumannii ORAB01 \n", - "9 Acinetobacter baumannii AB307-0294 \n", - "10 Acinetobacter baumannii AB307-0294 \n", - "11 Acinetobacter baumannii AB5075-UW \n", - "12 Acinetobacter baumannii AB307-0294 \n", - "13 Acinetobacter baumannii AB307-0294 \n", - "14 Acinetobacter baumannii AB5075-UW \n", - "15 Acinetobacter baumannii AB5075-UW \n", - "16 Acinetobacter baumannii DU202 \n", - "17 Acinetobacter baumannii DU202 \n", - "18 Acinetobacter baumannii DU202 \n", - "19 Acinetobacter baumannii strain FDA-CDC-AR_0305 \n", - "20 Acinetobacter baumannii strain FDA-CDC-AR_0306 \n", - "21 Acinetobacter baumannii strain FDA-CDC-AR_0307 \n", - "22 Acinetobacter baumannii strain FDA-CDC-AR_0308 \n", - "\n", - " Antibiotics MIC o_mic s_mic r_mic i_mic \\\n", - "0 Colistin 0.1 0.1 - 4 2 \n", - "1 Colistin 1 1 - 4 2 \n", - "2 Colistin 2 2 - 4 2 \n", - "3 Colistin - 4 2 \n", - "4 Ampicillin/sulbactam mg/L / 8/4 32/16 16/8 \n", - "5 Ampicillin/sulbactam >=0.3 mg/L 0.3/ 8/4 32/16 16/8 \n", - "6 Piperacillin/tazobactam 0 0 16/4 128/4 32/4-64/4 \n", - "7 Piperacillin/tazobactam NA 16/4 128/4 32/4-64/4 \n", - "8 Piperacillin/tazobactam >64/4 64/4 16/4 128/4 32/4-64/4 \n", - "9 Ceftriaxone 16 16 8 64 16-32 \n", - "10 Cefepime 8 8 8 32 16 \n", - "11 Cefepime >256 256 8 32 16 \n", - "12 Meropenem 0.25 0.25 2 8 4 \n", - "13 Imipenem 1 1 2 8 4 \n", - "14 Ceftazidime >128 128 8 32 16 \n", - "15 Ciprofloxacin >32 32 1 4 2 \n", - "16 Trimethoprim/sulfamethoxazole 8/152 8/152 2/38 4/76 - \n", - "17 Trimethoprim/sulfamethoxazole 8/152 8/152 2/38 4/76 - \n", - "18 Ticarcillin/clavulanicacid >=128/2 128/2 16/2 128/2 32/2-64/2 \n", - "19 Polymyxinb 1 1 - 4 2 \n", - "20 Polymyxinb 1 1 - 4 2 \n", - "21 Polymyxinb 8 8 - 4 2 \n", - "22 Polymyxinb 4 4 - 4 2 \n", - "\n", - " CLSI_profile \n", - "0 Intermediate \n", - "1 Intermediate \n", - "2 IntermediatE \n", - "3 Strain could not classified \n", - "4 Strain could not classified \n", - "5 Strain could not classified \n", - "6 Strain could not classified \n", - "7 Strain could not classified \n", - "8 Intermediate \n", - "9 Intermediate \n", - "10 Susceptible \n", - "11 Resistant \n", - "12 Susceptible \n", - "13 Susceptible \n", - "14 Resistant \n", - "15 Resistant \n", - "16 Resistant \n", - "17 Resistant \n", - "18 Resistant \n", - "19 Intermediate \n", - "20 Intermediate \n", - "21 Resistant \n", - "22 Resistant " - ] - }, - "execution_count": 61, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "result" - ] - }, - { - "cell_type": "code", - "execution_count": 16, - "id": "ab7d8379", - "metadata": {}, - "outputs": [], - "source": [ - "#result[['Strain name', 'Antibiotics', 'MIC','s_mic','r_mic','CLSI_profile']].to_csv(output_profile,sep=',', index=False, encoding='utf-8-sig')" - ] - }, - { - "cell_type": "code", - "execution_count": 17, - "id": "a426ae2b", - "metadata": {}, - "outputs": [], - "source": [ - "#create a pivot table for ASIST\n", - "table=result[['Strain name', 'Antibiotics','CLSI_profile']].drop_duplicates()\n", - "result_table=pd.pivot_table(table, values ='CLSI_profile', index =['Strain name'],columns =['Antibiotics'], aggfunc = lambda x: ' '.join(x))" - ] - }, - { - "cell_type": "code", - "execution_count": 18, - "id": "df439a58", - "metadata": {}, - "outputs": [ - { - "data": { - "text/html": [ - "<div>\n", - "<style scoped>\n", - " .dataframe tbody tr th:only-of-type {\n", - " vertical-align: middle;\n", - " }\n", - "\n", - " .dataframe tbody tr th {\n", - " vertical-align: top;\n", - " }\n", - "\n", - " .dataframe thead th {\n", - " text-align: right;\n", - " }\n", - "</style>\n", - "<table border=\"1\" class=\"dataframe\">\n", - " <thead>\n", - " <tr style=\"text-align: right;\">\n", - " <th>Antibiotics</th>\n", - " <th>Ampicillin/sulbactam</th>\n", - " <th>Cefepime</th>\n", - " <th>Ceftazidime</th>\n", - " <th>Ceftriaxone</th>\n", - " <th>Ciprofloxacin</th>\n", - " <th>Colistin</th>\n", - " <th>Imipenem</th>\n", - " <th>Meropenem</th>\n", - " <th>Piperacillin/tazobactam</th>\n", - " <th>Polymyxinb</th>\n", - " <th>Ticarcillin/clavulanicacid</th>\n", - " <th>Trimethoprim/sulfamethoxazole</th>\n", - " </tr>\n", - " <tr>\n", - " <th>Strain name</th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " </tr>\n", - " </thead>\n", - " <tbody>\n", - " <tr>\n", - " <th>Acinetobacter baumannii A85</th>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Susceptible</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " </tr>\n", - " <tr>\n", - " <th>Acinetobacter baumannii AB307-0294</th>\n", - " <td>Strain could not classified</td>\n", - " <td>Susceptible</td>\n", - " <td>NaN</td>\n", - " <td>Intermediate</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Susceptible</td>\n", - " <td>Susceptible</td>\n", - " <td>Strain could not classified</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " </tr>\n", - " <tr>\n", - " <th>Acinetobacter baumannii AB5075-UW</th>\n", - " <td>NaN</td>\n", - " <td>Resistant</td>\n", - " <td>Resistant</td>\n", - " <td>NaN</td>\n", - " <td>Resistant</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " </tr>\n", - " <tr>\n", - " <th>Acinetobacter baumannii DU202</th>\n", - " <td>Strain could not classified</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Strain could not classified</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Strain could not classified</td>\n", - " <td>NaN</td>\n", - " <td>Resistant</td>\n", - " <td>Resistant</td>\n", - " </tr>\n", - " <tr>\n", - " <th>Acinetobacter baumannii ORAB01</th>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Intermediate</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " </tr>\n", - " <tr>\n", - " <th>Acinetobacter baumannii strain FDA-CDC-AR_0305</th>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Susceptible</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " </tr>\n", - " <tr>\n", - " <th>Acinetobacter baumannii strain FDA-CDC-AR_0306</th>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Susceptible</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " </tr>\n", - " <tr>\n", - " <th>Acinetobacter baumannii strain FDA-CDC-AR_0307</th>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Resistant</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " </tr>\n", - " <tr>\n", - " <th>Acinetobacter baumannii strain FDA-CDC-AR_0308</th>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Resistant</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " </tr>\n", - " </tbody>\n", - "</table>\n", - "</div>" - ], - "text/plain": [ - "Antibiotics Ampicillin/sulbactam \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 NaN \n", - "Acinetobacter baumannii AB307-0294 Strain could not classified \n", - "Acinetobacter baumannii AB5075-UW NaN \n", - "Acinetobacter baumannii DU202 Strain could not classified \n", - "Acinetobacter baumannii ORAB01 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 NaN \n", - "\n", - "Antibiotics Cefepime Ceftazidime \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 NaN NaN \n", - "Acinetobacter baumannii AB307-0294 Susceptible NaN \n", - "Acinetobacter baumannii AB5075-UW Resistant Resistant \n", - "Acinetobacter baumannii DU202 NaN NaN \n", - "Acinetobacter baumannii ORAB01 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 NaN NaN \n", - "\n", - "Antibiotics Ceftriaxone Ciprofloxacin \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 NaN NaN \n", - "Acinetobacter baumannii AB307-0294 Intermediate NaN \n", - "Acinetobacter baumannii AB5075-UW NaN Resistant \n", - "Acinetobacter baumannii DU202 NaN NaN \n", - "Acinetobacter baumannii ORAB01 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 NaN NaN \n", - "\n", - "Antibiotics Colistin \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 Susceptible \n", - "Acinetobacter baumannii AB307-0294 NaN \n", - "Acinetobacter baumannii AB5075-UW NaN \n", - "Acinetobacter baumannii DU202 Strain could not classified \n", - "Acinetobacter baumannii ORAB01 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 NaN \n", - "\n", - "Antibiotics Imipenem Meropenem \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 NaN NaN \n", - "Acinetobacter baumannii AB307-0294 Susceptible Susceptible \n", - "Acinetobacter baumannii AB5075-UW NaN NaN \n", - "Acinetobacter baumannii DU202 NaN NaN \n", - "Acinetobacter baumannii ORAB01 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 NaN NaN \n", - "\n", - "Antibiotics Piperacillin/tazobactam \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 NaN \n", - "Acinetobacter baumannii AB307-0294 Strain could not classified \n", - "Acinetobacter baumannii AB5075-UW NaN \n", - "Acinetobacter baumannii DU202 Strain could not classified \n", - "Acinetobacter baumannii ORAB01 Intermediate \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 NaN \n", - "\n", - "Antibiotics Polymyxinb \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 NaN \n", - "Acinetobacter baumannii AB307-0294 NaN \n", - "Acinetobacter baumannii AB5075-UW NaN \n", - "Acinetobacter baumannii DU202 NaN \n", - "Acinetobacter baumannii ORAB01 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 Susceptible \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 Susceptible \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 Resistant \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 Resistant \n", - "\n", - "Antibiotics Ticarcillin/clavulanicacid \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 NaN \n", - "Acinetobacter baumannii AB307-0294 NaN \n", - "Acinetobacter baumannii AB5075-UW NaN \n", - "Acinetobacter baumannii DU202 Resistant \n", - "Acinetobacter baumannii ORAB01 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 NaN \n", - "\n", - "Antibiotics Trimethoprim/sulfamethoxazole \n", - "Strain name \n", - "Acinetobacter baumannii A85 NaN \n", - "Acinetobacter baumannii AB307-0294 NaN \n", - "Acinetobacter baumannii AB5075-UW NaN \n", - "Acinetobacter baumannii DU202 Resistant \n", - "Acinetobacter baumannii ORAB01 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 NaN " - ] - }, - "execution_count": 18, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "result_table" - ] - }, - { - "cell_type": "code", - "execution_count": 19, - "id": "ee19e872", - "metadata": {}, - "outputs": [], - "source": [ - "#result_table.to_csv(output_table,na_rep='NA')" - ] - }, - { - "cell_type": "code", - "execution_count": 20, - "id": "692ab948", - "metadata": {}, - "outputs": [], - "source": [ - "# reorder the Antibiotics for ASIST\n", - "clsi_ab=['Amikacin','Tobramycin','Gentamycin','Imipenem','Meropenem','Doripenem','Ciprofloxacin','Levofloxacin',\n", - " 'Piperacillin/tazobactam','Ticarcillin/clavulanicacid','Cefotaxime','Ceftriaxone','Ceftazidime','Cefepime',\n", - " 'Trimethoprim/sulfamethoxazole','Ampicillin/sulbactam','Colistin','Polymyxinb','Tetracycline','Doxicycline ',\n", - " 'Minocycline']\n", - "result_selected=result_table.filter(clsi_ab)" - ] - }, - { - "cell_type": "code", - "execution_count": 21, - "id": "e0d983b9", - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "(9, 12)" - ] - }, - "execution_count": 21, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "result_selected.shape" - ] - }, - { - "cell_type": "code", - "execution_count": 22, - "id": "04376d0a", - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "(9, 12)" - ] - }, - "execution_count": 22, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "result_table.shape" - ] - }, - { - "cell_type": "code", - "execution_count": 23, - "id": "1b0a4d77", - "metadata": {}, - "outputs": [], - "source": [ - "result_selected.insert(0,'Resistance_phenotype','')" - ] - }, - { - "cell_type": "code", - "execution_count": 24, - "id": "d36dcdab", - "metadata": {}, - "outputs": [], - "source": [ - "result_selected.to_csv(output_table,na_rep='NA')" - ] - }, - { - "cell_type": "code", - "execution_count": 25, - "id": "5c162c07", - "metadata": {}, - "outputs": [ - { - "data": { - "text/html": [ - "<div>\n", - "<style scoped>\n", - " .dataframe tbody tr th:only-of-type {\n", - " vertical-align: middle;\n", - " }\n", - "\n", - " .dataframe tbody tr th {\n", - " vertical-align: top;\n", - " }\n", - "\n", - " .dataframe thead th {\n", - " text-align: right;\n", - " }\n", - "</style>\n", - "<table border=\"1\" class=\"dataframe\">\n", - " <thead>\n", - " <tr style=\"text-align: right;\">\n", - " <th>Antibiotics</th>\n", - " <th>Resistance_phenotype</th>\n", - " <th>Imipenem</th>\n", - " <th>Meropenem</th>\n", - " <th>Ciprofloxacin</th>\n", - " <th>Piperacillin/ tazobactam</th>\n", - " <th>Ticarcillin/clavulanic acid</th>\n", - " <th>Ceftriaxone</th>\n", - " <th>Ceftazidime</th>\n", - " <th>Cefepime</th>\n", - " <th>Trimethoprim/ sulfamethoxazole</th>\n", - " <th>Ampicillin/ sulbactam</th>\n", - " <th>Colistin</th>\n", - " <th>Polymyxin B</th>\n", - " </tr>\n", - " <tr>\n", - " <th>Strain name</th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " <th></th>\n", - " </tr>\n", - " </thead>\n", - " <tbody>\n", - " <tr>\n", - " <th>Acinetobacter baumannii A85</th>\n", - " <td></td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Susceptible</td>\n", - " <td>NaN</td>\n", - " </tr>\n", - " <tr>\n", - " <th>Acinetobacter baumannii AB307-0294</th>\n", - " <td></td>\n", - " <td>Susceptible</td>\n", - " <td>Susceptible</td>\n", - " <td>NaN</td>\n", - " <td>Strain could not classified</td>\n", - " <td>NaN</td>\n", - " <td>Intermediate</td>\n", - " <td>NaN</td>\n", - " <td>Susceptible</td>\n", - " <td>NaN</td>\n", - " <td>Strain could not classified</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " </tr>\n", - " <tr>\n", - " <th>Acinetobacter baumannii AB5075-UW</th>\n", - " <td></td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Resistant</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Resistant</td>\n", - " <td>Resistant</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " </tr>\n", - " <tr>\n", - " <th>Acinetobacter baumannii DU202</th>\n", - " <td></td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Strain could not classified</td>\n", - " <td>Resistant</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Resistant</td>\n", - " <td>Strain could not classified</td>\n", - " <td>Strain could not classified</td>\n", - " <td>NaN</td>\n", - " </tr>\n", - " <tr>\n", - " <th>Acinetobacter baumannii ORAB01</th>\n", - " <td></td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Intermediate</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " </tr>\n", - " <tr>\n", - " <th>Acinetobacter baumannii strain FDA-CDC-AR_0305</th>\n", - " <td></td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Susceptible</td>\n", - " </tr>\n", - " <tr>\n", - " <th>Acinetobacter baumannii strain FDA-CDC-AR_0306</th>\n", - " <td></td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Susceptible</td>\n", - " </tr>\n", - " <tr>\n", - " <th>Acinetobacter baumannii strain FDA-CDC-AR_0307</th>\n", - " <td></td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Resistant</td>\n", - " </tr>\n", - " <tr>\n", - " <th>Acinetobacter baumannii strain FDA-CDC-AR_0308</th>\n", - " <td></td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>NaN</td>\n", - " <td>Resistant</td>\n", - " </tr>\n", - " </tbody>\n", - "</table>\n", - "</div>" - ], - "text/plain": [ - "Antibiotics Resistance_phenotype \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 \n", - "Acinetobacter baumannii AB307-0294 \n", - "Acinetobacter baumannii AB5075-UW \n", - "Acinetobacter baumannii DU202 \n", - "Acinetobacter baumannii ORAB01 \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 \n", - "\n", - "Antibiotics Imipenem Meropenem \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 NaN NaN \n", - "Acinetobacter baumannii AB307-0294 Susceptible Susceptible \n", - "Acinetobacter baumannii AB5075-UW NaN NaN \n", - "Acinetobacter baumannii DU202 NaN NaN \n", - "Acinetobacter baumannii ORAB01 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 NaN NaN \n", - "\n", - "Antibiotics Ciprofloxacin \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 NaN \n", - "Acinetobacter baumannii AB307-0294 NaN \n", - "Acinetobacter baumannii AB5075-UW Resistant \n", - "Acinetobacter baumannii DU202 NaN \n", - "Acinetobacter baumannii ORAB01 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 NaN \n", - "\n", - "Antibiotics Piperacillin/ tazobactam \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 NaN \n", - "Acinetobacter baumannii AB307-0294 Strain could not classified \n", - "Acinetobacter baumannii AB5075-UW NaN \n", - "Acinetobacter baumannii DU202 Strain could not classified \n", - "Acinetobacter baumannii ORAB01 Intermediate \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 NaN \n", - "\n", - "Antibiotics Ticarcillin/clavulanic acid \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 NaN \n", - "Acinetobacter baumannii AB307-0294 NaN \n", - "Acinetobacter baumannii AB5075-UW NaN \n", - "Acinetobacter baumannii DU202 Resistant \n", - "Acinetobacter baumannii ORAB01 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 NaN \n", - "\n", - "Antibiotics Ceftriaxone Ceftazidime \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 NaN NaN \n", - "Acinetobacter baumannii AB307-0294 Intermediate NaN \n", - "Acinetobacter baumannii AB5075-UW NaN Resistant \n", - "Acinetobacter baumannii DU202 NaN NaN \n", - "Acinetobacter baumannii ORAB01 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 NaN NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 NaN NaN \n", - "\n", - "Antibiotics Cefepime \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 NaN \n", - "Acinetobacter baumannii AB307-0294 Susceptible \n", - "Acinetobacter baumannii AB5075-UW Resistant \n", - "Acinetobacter baumannii DU202 NaN \n", - "Acinetobacter baumannii ORAB01 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 NaN \n", - "\n", - "Antibiotics Trimethoprim/ sulfamethoxazole \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 NaN \n", - "Acinetobacter baumannii AB307-0294 NaN \n", - "Acinetobacter baumannii AB5075-UW NaN \n", - "Acinetobacter baumannii DU202 Resistant \n", - "Acinetobacter baumannii ORAB01 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 NaN \n", - "\n", - "Antibiotics Ampicillin/ sulbactam \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 NaN \n", - "Acinetobacter baumannii AB307-0294 Strain could not classified \n", - "Acinetobacter baumannii AB5075-UW NaN \n", - "Acinetobacter baumannii DU202 Strain could not classified \n", - "Acinetobacter baumannii ORAB01 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 NaN \n", - "\n", - "Antibiotics Colistin \\\n", - "Strain name \n", - "Acinetobacter baumannii A85 Susceptible \n", - "Acinetobacter baumannii AB307-0294 NaN \n", - "Acinetobacter baumannii AB5075-UW NaN \n", - "Acinetobacter baumannii DU202 Strain could not classified \n", - "Acinetobacter baumannii ORAB01 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 NaN \n", - "\n", - "Antibiotics Polymyxin B \n", - "Strain name \n", - "Acinetobacter baumannii A85 NaN \n", - "Acinetobacter baumannii AB307-0294 NaN \n", - "Acinetobacter baumannii AB5075-UW NaN \n", - "Acinetobacter baumannii DU202 NaN \n", - "Acinetobacter baumannii ORAB01 NaN \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0305 Susceptible \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0306 Susceptible \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0307 Resistant \n", - "Acinetobacter baumannii strain FDA-CDC-AR_0308 Resistant " - ] - }, - "execution_count": 25, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "#rename headers\n", - "result_selected.rename(columns = {'Ticarcillin/clavulanicacid':'Ticarcillin/clavulanic acid','Piperacillin/tazobactam':'Piperacillin/ tazobactam','Trimethoprim/sulfamethoxazole': 'Trimethoprim/ sulfamethoxazole','Ampicillin/sulbactam':'Ampicillin/ sulbactam', 'Polymyxinb': 'Polymyxin B'} )" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "00cd53d4", - "metadata": {}, - "outputs": [], - "source": [] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "475401df", - "metadata": {}, - "outputs": [], - "source": [] - } - ], - "metadata": { - "kernelspec": { - "display_name": "Python 3", - "language": "python", - "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.9.1" - } - }, - "nbformat": 4, - "nbformat_minor": 5 -}
--- a/clsi_profile_type2_linux.ipynb Tue Jun 29 05:20:41 2021 +0000 +++ b/clsi_profile_type2_linux.ipynb Tue Jun 29 12:15:06 2021 +0000 @@ -2,7 +2,7 @@ "cells": [ { "cell_type": "code", - "execution_count": 37, + "execution_count": 115, "id": "9aa0a6f7", "metadata": {}, "outputs": [], @@ -16,25 +16,17 @@ }, { "cell_type": "code", - "execution_count": 38, + "execution_count": 116, "id": "9af8387e", "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "1.2.4 2.2.1\n" - ] - } - ], + "outputs": [], "source": [ "#print(pd.__version__, re.__version__)" ] }, { "cell_type": "code", - "execution_count": 39, + "execution_count": 117, "id": "73d0783c", "metadata": {}, "outputs": [], @@ -114,9 +106,9 @@ " elif (mic_type=='i' and (float(m1a)==float(m2a))):\n", " m_type='Intermediate'\n", " else:\n", - " m_type='Strain could not be classified-1' \n", + " m_type='Strain could not be classified' \n", " except IndexError:\n", - " strain_type='Strain could not be classified-2' \n", + " strain_type='Strain could not be classified' \n", " return(strain_type)\n", " \n", " return(m_type)\n", @@ -126,7 +118,7 @@ }, { "cell_type": "code", - "execution_count": 40, + "execution_count": 118, "id": "4d2ab1b1", "metadata": {}, "outputs": [], @@ -157,7 +149,7 @@ }, { "cell_type": "code", - "execution_count": 41, + "execution_count": 119, "id": "0e22ef0d", "metadata": {}, "outputs": [ @@ -167,7 +159,7 @@ "'# for input argument\\ninput_user = sys.argv[1]\\ninput_clsi = sys.argv[2]\\noutput_table = sys.argv[3]'" ] }, - "execution_count": 41, + "execution_count": 119, "metadata": {}, "output_type": "execute_result" } @@ -181,290 +173,37 @@ }, { "cell_type": "code", - "execution_count": 42, + "execution_count": 3, "id": "21d5fe63", "metadata": {}, - "outputs": [], - "source": [ - "'''input_user='input2.csv'\n", - "input_clsi='clsi.csv'\n", - "output_profile=input_user+'_profile.csv'\n", - "output_table=input_user+'_table.csv''''" - ] - }, - { - "cell_type": "code", - "execution_count": 43, - "id": "1e64b025", - "metadata": {}, "outputs": [ { "data": { - "text/html": [ - "<div>\n", - "<style scoped>\n", - " .dataframe tbody tr th:only-of-type {\n", - " vertical-align: middle;\n", - " }\n", - "\n", - " .dataframe tbody tr th {\n", - " vertical-align: top;\n", - " }\n", - "\n", - " .dataframe thead th {\n", - " text-align: right;\n", - " }\n", - "</style>\n", - "<table border=\"1\" class=\"dataframe\">\n", - " <thead>\n", - " <tr style=\"text-align: right;\">\n", - " <th></th>\n", - " <th>Strain name</th>\n", - " <th>Antibiotics</th>\n", - " <th>MIC</th>\n", - " </tr>\n", - " </thead>\n", - " <tbody>\n", - " <tr>\n", - " <th>0</th>\n", - " <td>Acinetobacter baumannii A85</td>\n", - " <td>Colistin</td>\n", - " <td>0.1</td>\n", - " </tr>\n", - " <tr>\n", - " <th>1</th>\n", - " <td>Acinetobacter baumannii A85</td>\n", - " <td>Netilmicin</td>\n", - " <td>1</td>\n", - " </tr>\n", - " <tr>\n", - " <th>2</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Ampicillin</td>\n", - " <td>0</td>\n", - " </tr>\n", - " <tr>\n", - " <th>3</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Ampicillin/sulbactam</td>\n", - " <td>mg/L</td>\n", - " </tr>\n", - " <tr>\n", - " <th>4</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>piperacillin/tazobactam</td>\n", - " <td>0</td>\n", - " </tr>\n", - " <tr>\n", - " <th>5</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Cefazolin</td>\n", - " <td>64</td>\n", - " </tr>\n", - " <tr>\n", - " <th>6</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Ceftriaxone</td>\n", - " <td>16</td>\n", - " </tr>\n", - " <tr>\n", - " <th>7</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Cefepime</td>\n", - " <td>8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>8</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Meropenem</td>\n", - " <td>0.25</td>\n", - " </tr>\n", - " <tr>\n", - " <th>9</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Imipenem</td>\n", - " <td>1</td>\n", - " </tr>\n", - " <tr>\n", - " <th>10</th>\n", - " <td>Acinetobacter baumannii AB307-0294</td>\n", - " <td>Tigecycline</td>\n", - " <td>0.5</td>\n", - " </tr>\n", - " <tr>\n", - " <th>11</th>\n", - " <td>Acinetobacter baumannii AB5075-UW</td>\n", - " <td>Ceftazidime</td>\n", - " <td>>128</td>\n", - " </tr>\n", - " <tr>\n", - " <th>12</th>\n", - " <td>Acinetobacter baumannii AB5075-UW</td>\n", - " <td>Cefepime</td>\n", - " <td>>256</td>\n", - " </tr>\n", - " <tr>\n", - " <th>13</th>\n", - " <td>Acinetobacter baumannii AB5075-UW</td>\n", - " <td>Ciprofloxacin</td>\n", - " <td>>32</td>\n", - " </tr>\n", - " <tr>\n", - " <th>14</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>colistin</td>\n", - " <td></td>\n", - " </tr>\n", - " <tr>\n", - " <th>15</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>Ampicillin/sulbactam</td>\n", - " <td>>=0.3 mg/L</td>\n", - " </tr>\n", - " <tr>\n", - " <th>16</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>ticarcillin/clavulanic acid</td>\n", - " <td>>=128/2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>17</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>piperacillin/tazobactam</td>\n", - " <td>NA</td>\n", - " </tr>\n", - " <tr>\n", - " <th>18</th>\n", - " <td>Acinetobacter baumannii DU202</td>\n", - " <td>trimethoprim/sulfamethoxazole</td>\n", - " <td>8/152</td>\n", - " </tr>\n", - " <tr>\n", - " <th>19</th>\n", - " <td>Acinetobacter baumannii ORAB01</td>\n", - " <td>piperacillin/tazobactam</td>\n", - " <td>>64/4</td>\n", - " </tr>\n", - " <tr>\n", - " <th>20</th>\n", - " <td>Acinetobacter baumannii strain MRSN7100</td>\n", - " <td>amoxicillin/clavulanic acid</td>\n", - " <td>16/8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>21</th>\n", - " <td>Acinetobacter baumannii strain MRSN7168</td>\n", - " <td>amoxicillin/clavulanic acid</td>\n", - " <td>16/8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>22</th>\n", - " <td>Acinetobacter baumannii strain MRSN7336</td>\n", - " <td>amoxicillin/clavulanic acid</td>\n", - " <td>16/8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>23</th>\n", - " <td>Acinetobacter baumannii strain MRSN7834</td>\n", - " <td>amoxicillin/clavulanic acid</td>\n", - " <td>16/8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>24</th>\n", - " <td>Acinetobacter baumannii strain FDA-CDC-AR_0305</td>\n", - " <td>polymyxin B</td>\n", - " <td>1</td>\n", - " </tr>\n", - " <tr>\n", - " <th>25</th>\n", - " <td>Acinetobacter baumannii strain FDA-CDC-AR_0306</td>\n", - " <td>polymyxin B</td>\n", - " <td>1</td>\n", - " </tr>\n", - " <tr>\n", - " <th>26</th>\n", - " <td>Acinetobacter baumannii strain FDA-CDC-AR_0307</td>\n", - " <td>polymyxin B</td>\n", - " <td>8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>27</th>\n", - " <td>Acinetobacter baumannii strain FDA-CDC-AR_0308</td>\n", - " <td>polymyxin B</td>\n", - " <td>4</td>\n", - " </tr>\n", - " </tbody>\n", - "</table>\n", - "</div>" - ], "text/plain": [ - " Strain name \\\n", - "0 Acinetobacter baumannii A85 \n", - "1 Acinetobacter baumannii A85 \n", - "2 Acinetobacter baumannii AB307-0294 \n", - "3 Acinetobacter baumannii AB307-0294 \n", - "4 Acinetobacter baumannii AB307-0294 \n", - "5 Acinetobacter baumannii AB307-0294 \n", - "6 Acinetobacter baumannii AB307-0294 \n", - "7 Acinetobacter baumannii AB307-0294 \n", - "8 Acinetobacter baumannii AB307-0294 \n", - "9 Acinetobacter baumannii AB307-0294 \n", - "10 Acinetobacter baumannii AB307-0294 \n", - "11 Acinetobacter baumannii AB5075-UW \n", - "12 Acinetobacter baumannii AB5075-UW \n", - "13 Acinetobacter baumannii AB5075-UW \n", - "14 Acinetobacter baumannii DU202 \n", - "15 Acinetobacter baumannii DU202 \n", - "16 Acinetobacter baumannii DU202 \n", - "17 Acinetobacter baumannii DU202 \n", - "18 Acinetobacter baumannii DU202 \n", - "19 Acinetobacter baumannii ORAB01 \n", - "20 Acinetobacter baumannii strain MRSN7100 \n", - "21 Acinetobacter baumannii strain MRSN7168 \n", - "22 Acinetobacter baumannii strain MRSN7336 \n", - "23 Acinetobacter baumannii strain MRSN7834 \n", - "24 Acinetobacter baumannii strain FDA-CDC-AR_0305 \n", - "25 Acinetobacter baumannii strain FDA-CDC-AR_0306 \n", - "26 Acinetobacter baumannii strain FDA-CDC-AR_0307 \n", - "27 Acinetobacter baumannii strain FDA-CDC-AR_0308 \n", - "\n", - " Antibiotics MIC \n", - "0 Colistin 0.1 \n", - "1 Netilmicin 1 \n", - "2 Ampicillin 0 \n", - "3 Ampicillin/sulbactam mg/L \n", - "4 piperacillin/tazobactam 0 \n", - "5 Cefazolin 64 \n", - "6 Ceftriaxone 16 \n", - "7 Cefepime 8 \n", - "8 Meropenem 0.25 \n", - "9 Imipenem 1 \n", - "10 Tigecycline 0.5 \n", - "11 Ceftazidime >128 \n", - "12 Cefepime >256 \n", - "13 Ciprofloxacin >32 \n", - "14 colistin \n", - "15 Ampicillin/sulbactam >=0.3 mg/L \n", - "16 ticarcillin/clavulanic acid >=128/2 \n", - "17 piperacillin/tazobactam NA \n", - "18 trimethoprim/sulfamethoxazole 8/152 \n", - "19 piperacillin/tazobactam >64/4 \n", - "20 amoxicillin/clavulanic acid 16/8 \n", - "21 amoxicillin/clavulanic acid 16/8 \n", - "22 amoxicillin/clavulanic acid 16/8 \n", - "23 amoxicillin/clavulanic acid 16/8 \n", - "24 polymyxin B 1 \n", - "25 polymyxin B 1 \n", - "26 polymyxin B 8 \n", - "27 polymyxin B 4 " + "\"#input_user='~/Jupyterlab_notebook/ASIST_module/strain_profiles_16k.csv.csv'\\ninput_user='test-data/input2.csv'\\ninput_clsi='test-data/clsi.csv'\\noutput_profile='test-data/input2_profile.csv'\\noutput_table='test-data/input2_table.csv'\\n#output_table='/home/rakesh/Jupyterlab_notebook/ASIST_module/strain_profiles_16k_table.csv'\"" ] }, - "execution_count": 43, + "execution_count": 3, "metadata": {}, "output_type": "execute_result" } ], "source": [ + "\"\"\"#input_user='~/Jupyterlab_notebook/ASIST_module/strain_profiles_16k.csv.csv'\n", + "input_user='test-data/input2.csv'\n", + "input_clsi='test-data/clsi.csv'\n", + "output_profile='test-data/input2_profile.csv'\n", + "output_table='test-data/input2_table.csv'\n", + "#output_table='/home/rakesh/Jupyterlab_notebook/ASIST_module/strain_profiles_16k_table.csv'\"\"\"" + ] + }, + { + "cell_type": "code", + "execution_count": 146, + "id": "1e64b025", + "metadata": {}, + "outputs": [], + "source": [ "# read user AST data with selected 3 columns\n", "strain_mic=pd.read_csv(input_user, sep=',', usecols =['Strain name', 'Antibiotics', 'MIC'],na_filter=False)\n", "#strain_mic" @@ -472,7 +211,7 @@ }, { "cell_type": "code", - "execution_count": 44, + "execution_count": 147, "id": "0d30ddc3", "metadata": {}, "outputs": [], @@ -484,7 +223,7 @@ }, { "cell_type": "code", - "execution_count": 45, + "execution_count": 148, "id": "a818676d", "metadata": {}, "outputs": [], @@ -495,7 +234,27 @@ }, { "cell_type": "code", - "execution_count": 46, + "execution_count": 149, + "id": "c2aae757", + "metadata": {}, + "outputs": [], + "source": [ + "input_dups=strain_mic[strain_mic[['Strain name','Antibiotics']].duplicated()]\n", + "if (input_dups.shape[0] == 0):\n", + " #print( \"No duplicates\")\n", + " pass\n", + "else:\n", + " input_dups.to_csv(output_table,na_rep='NA')\n", + " with open(output_table, \"a\") as file_object:\n", + " # Append 'hello' at the end of file\n", + " file_object.write('Input File Error: Please remove duplicate/mutiple MIC values for same combination of Strain name and Antibiotics from input file')\n", + " exit()\n", + "#input_dups.head()" + ] + }, + { + "cell_type": "code", + "execution_count": 125, "id": "c6b4c59b", "metadata": {}, "outputs": [], @@ -508,7 +267,7 @@ }, { "cell_type": "code", - "execution_count": 47, + "execution_count": 126, "id": "d0171f94", "metadata": {}, "outputs": [], @@ -518,7 +277,7 @@ }, { "cell_type": "code", - "execution_count": 48, + "execution_count": 127, "id": "fe45b2dd", "metadata": {}, "outputs": [], @@ -532,7 +291,7 @@ }, { "cell_type": "code", - "execution_count": 49, + "execution_count": 128, "id": "ddbbe4d9", "metadata": {}, "outputs": [], @@ -542,7 +301,7 @@ }, { "cell_type": "code", - "execution_count": 50, + "execution_count": 129, "id": "640508f1", "metadata": {}, "outputs": [], @@ -556,7 +315,7 @@ }, { "cell_type": "code", - "execution_count": 51, + "execution_count": 130, "id": "b87426f4", "metadata": {}, "outputs": [], @@ -577,315 +336,17 @@ }, { "cell_type": "code", - "execution_count": 52, + "execution_count": 131, "id": "91bfc94d", "metadata": {}, - "outputs": [ - { - "data": { - "text/html": [ - "<div>\n", - "<style scoped>\n", - " .dataframe tbody tr th:only-of-type {\n", - " vertical-align: middle;\n", - " }\n", - "\n", - " .dataframe tbody tr th {\n", - " vertical-align: top;\n", - " }\n", - "\n", - " .dataframe thead th {\n", - " text-align: right;\n", - " }\n", - "</style>\n", - "<table border=\"1\" class=\"dataframe\">\n", - " <thead>\n", - " <tr style=\"text-align: right;\">\n", - " <th></th>\n", - " <th>Strain name</th>\n", - " <th>Antibiotics</th>\n", - " <th>MIC</th>\n", - " <th>o_mic</th>\n", - " <th>s_mic</th>\n", - " <th>r_mic</th>\n", - " <th>i_mic</th>\n", - " </tr>\n", - " </thead>\n", - " <tbody>\n", - " <tr>\n", - " <th>0</th>\n", - " <td>Acinetobacterbaumanniia85</td>\n", - " <td>Colistin</td>\n", - " <td>0.1</td>\n", - " <td>0.1</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>1</th>\n", - " <td>Acinetobacterbaumanniidu202</td>\n", - " <td>Colistin</td>\n", - " <td></td>\n", - " <td></td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>2</th>\n", - " <td>Acinetobacterbaumanniia85</td>\n", - " <td>Netilmicin</td>\n", - " <td>1</td>\n", - " <td>1</td>\n", - " <td>8</td>\n", - " <td>32</td>\n", - " <td>16</td>\n", - " </tr>\n", - " <tr>\n", - " <th>3</th>\n", - " <td>Acinetobacterbaumanniiab307-0294</td>\n", - " <td>Ampicillin/sulbactam</td>\n", - " <td>mg/L</td>\n", - " <td>/</td>\n", - " <td>8/4</td>\n", - " <td>32/16</td>\n", - " <td>16/8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>4</th>\n", - " <td>Acinetobacterbaumanniidu202</td>\n", - " <td>Ampicillin/sulbactam</td>\n", - " <td>>=0.3 mg/L</td>\n", - " <td>0.3/</td>\n", - " <td>8/4</td>\n", - " <td>32/16</td>\n", - " <td>16/8</td>\n", - " </tr>\n", - " <tr>\n", - " <th>5</th>\n", - " <td>Acinetobacterbaumanniiab307-0294</td>\n", - " <td>Piperacillin/tazobactam</td>\n", - " <td>0</td>\n", - " <td>0</td>\n", - " <td>16/4</td>\n", - " <td>128/4</td>\n", - " <td>32/4-64/4</td>\n", - " </tr>\n", - " <tr>\n", - " <th>6</th>\n", - " <td>Acinetobacterbaumanniidu202</td>\n", - " <td>Piperacillin/tazobactam</td>\n", - " <td>NA</td>\n", - " <td></td>\n", - " <td>16/4</td>\n", - " <td>128/4</td>\n", - " <td>32/4-64/4</td>\n", - " </tr>\n", - " <tr>\n", - " <th>7</th>\n", - " <td>Acinetobacterbaumanniiorab01</td>\n", - " <td>Piperacillin/tazobactam</td>\n", - " <td>>64/4</td>\n", - " <td>64/4</td>\n", - " <td>16/4</td>\n", - " <td>128/4</td>\n", - " <td>32/4-64/4</td>\n", - " </tr>\n", - " <tr>\n", - " <th>8</th>\n", - " <td>Acinetobacterbaumanniiab307-0294</td>\n", - " <td>Ceftriaxone</td>\n", - " <td>16</td>\n", - " <td>16</td>\n", - " <td>8</td>\n", - " <td>64</td>\n", - " <td>16-32</td>\n", - " </tr>\n", - " <tr>\n", - " <th>9</th>\n", - " <td>Acinetobacterbaumanniiab307-0294</td>\n", - " <td>Cefepime</td>\n", - " <td>8</td>\n", - " <td>8</td>\n", - " <td>8</td>\n", - " <td>32</td>\n", - " <td>16</td>\n", - " </tr>\n", - " <tr>\n", - " <th>10</th>\n", - " <td>Acinetobacterbaumanniiab5075-uw</td>\n", - " <td>Cefepime</td>\n", - " <td>>256</td>\n", - " <td>256</td>\n", - " <td>8</td>\n", - " <td>32</td>\n", - " <td>16</td>\n", - " </tr>\n", - " <tr>\n", - " <th>11</th>\n", - " <td>Acinetobacterbaumanniiab307-0294</td>\n", - " <td>Meropenem</td>\n", - " <td>0.25</td>\n", - " <td>0.25</td>\n", - " <td>2</td>\n", - " <td>8</td>\n", - " <td>4</td>\n", - " </tr>\n", - " <tr>\n", - " <th>12</th>\n", - " <td>Acinetobacterbaumanniiab307-0294</td>\n", - " <td>Imipenem</td>\n", - " <td>1</td>\n", - " <td>1</td>\n", - " <td>2</td>\n", - " <td>8</td>\n", - " <td>4</td>\n", - " </tr>\n", - " <tr>\n", - " <th>13</th>\n", - " <td>Acinetobacterbaumanniiab5075-uw</td>\n", - " <td>Ceftazidime</td>\n", - " <td>>128</td>\n", - " <td>128</td>\n", - " <td>8</td>\n", - " <td>32</td>\n", - " <td>16</td>\n", - " </tr>\n", - " <tr>\n", - " <th>14</th>\n", - " <td>Acinetobacterbaumanniiab5075-uw</td>\n", - " <td>Ciprofloxacin</td>\n", - " <td>>32</td>\n", - " <td>32</td>\n", - " <td>1</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>15</th>\n", - " <td>Acinetobacterbaumanniidu202</td>\n", - " <td>Ticarcillin/clavulanicacid</td>\n", - " <td>>=128/2</td>\n", - " <td>128/2</td>\n", - " <td>16/2</td>\n", - " <td>128/2</td>\n", - " <td>32/2-64/2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>16</th>\n", - " <td>Acinetobacterbaumanniidu202</td>\n", - " <td>Trimethoprim/sulfamethoxazole</td>\n", - " <td>8/152</td>\n", - " <td>8/152</td>\n", - " <td>2/38</td>\n", - " <td>4/76</td>\n", - " <td>-</td>\n", - " </tr>\n", - " <tr>\n", - " <th>17</th>\n", - " <td>Acinetobacterbaumanniistrainfda-cdc-ar_0305</td>\n", - " <td>Polymyxinb</td>\n", - " <td>1</td>\n", - " <td>1</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>18</th>\n", - " <td>Acinetobacterbaumanniistrainfda-cdc-ar_0306</td>\n", - " <td>Polymyxinb</td>\n", - " <td>1</td>\n", - " <td>1</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>19</th>\n", - " <td>Acinetobacterbaumanniistrainfda-cdc-ar_0307</td>\n", - " <td>Polymyxinb</td>\n", - " <td>8</td>\n", - " <td>8</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " </tr>\n", - " <tr>\n", - " <th>20</th>\n", - " <td>Acinetobacterbaumanniistrainfda-cdc-ar_0308</td>\n", - " <td>Polymyxinb</td>\n", - " <td>4</td>\n", - " <td>4</td>\n", - " <td>-</td>\n", - " <td>4</td>\n", - " <td>2</td>\n", - " </tr>\n", - " </tbody>\n", - "</table>\n", - "</div>" - ], - "text/plain": [ - " Strain name \\\n", - "0 Acinetobacterbaumanniia85 \n", - "1 Acinetobacterbaumanniidu202 \n", - "2 Acinetobacterbaumanniia85 \n", - "3 Acinetobacterbaumanniiab307-0294 \n", - "4 Acinetobacterbaumanniidu202 \n", - "5 Acinetobacterbaumanniiab307-0294 \n", - "6 Acinetobacterbaumanniidu202 \n", - "7 Acinetobacterbaumanniiorab01 \n", - "8 Acinetobacterbaumanniiab307-0294 \n", - "9 Acinetobacterbaumanniiab307-0294 \n", - "10 Acinetobacterbaumanniiab5075-uw \n", - "11 Acinetobacterbaumanniiab307-0294 \n", - "12 Acinetobacterbaumanniiab307-0294 \n", - "13 Acinetobacterbaumanniiab5075-uw \n", - "14 Acinetobacterbaumanniiab5075-uw \n", - "15 Acinetobacterbaumanniidu202 \n", - "16 Acinetobacterbaumanniidu202 \n", - "17 Acinetobacterbaumanniistrainfda-cdc-ar_0305 \n", - "18 Acinetobacterbaumanniistrainfda-cdc-ar_0306 \n", - "19 Acinetobacterbaumanniistrainfda-cdc-ar_0307 \n", - "20 Acinetobacterbaumanniistrainfda-cdc-ar_0308 \n", - "\n", - " Antibiotics MIC o_mic s_mic r_mic i_mic \n", - "0 Colistin 0.1 0.1 - 4 2 \n", - "1 Colistin - 4 2 \n", - "2 Netilmicin 1 1 8 32 16 \n", - "3 Ampicillin/sulbactam mg/L / 8/4 32/16 16/8 \n", - "4 Ampicillin/sulbactam >=0.3 mg/L 0.3/ 8/4 32/16 16/8 \n", - "5 Piperacillin/tazobactam 0 0 16/4 128/4 32/4-64/4 \n", - "6 Piperacillin/tazobactam NA 16/4 128/4 32/4-64/4 \n", - "7 Piperacillin/tazobactam >64/4 64/4 16/4 128/4 32/4-64/4 \n", - "8 Ceftriaxone 16 16 8 64 16-32 \n", - "9 Cefepime 8 8 8 32 16 \n", - "10 Cefepime >256 256 8 32 16 \n", - "11 Meropenem 0.25 0.25 2 8 4 \n", - "12 Imipenem 1 1 2 8 4 \n", - "13 Ceftazidime >128 128 8 32 16 \n", - "14 Ciprofloxacin >32 32 1 4 2 \n", - "15 Ticarcillin/clavulanicacid >=128/2 128/2 16/2 128/2 32/2-64/2 \n", - "16 Trimethoprim/sulfamethoxazole 8/152 8/152 2/38 4/76 - \n", - "17 Polymyxinb 1 1 - 4 2 \n", - "18 Polymyxinb 1 1 - 4 2 \n", - "19 Polymyxinb 8 8 - 4 2 \n", - "20 Polymyxinb 4 4 - 4 2 " - ] - }, - "execution_count": 52, - "metadata": {}, - "output_type": "execute_result" - } - ], + "outputs": [], "source": [ "#result" ] }, { "cell_type": "code", - "execution_count": 53, + "execution_count": 132, "id": "b171f205", "metadata": {}, "outputs": [], @@ -899,7 +360,7 @@ }, { "cell_type": "code", - "execution_count": 54, + "execution_count": 133, "id": "3336fd92", "metadata": {}, "outputs": [], @@ -909,7 +370,7 @@ }, { "cell_type": "code", - "execution_count": 55, + "execution_count": 134, "id": "f0dacfd1", "metadata": {}, "outputs": [], @@ -919,7 +380,7 @@ }, { "cell_type": "code", - "execution_count": 56, + "execution_count": 135, "id": "3d8d03f7", "metadata": {}, "outputs": [], @@ -931,7 +392,7 @@ }, { "cell_type": "code", - "execution_count": 57, + "execution_count": 136, "id": "7d7223a3", "metadata": {}, "outputs": [], @@ -941,7 +402,7 @@ }, { "cell_type": "code", - "execution_count": 58, + "execution_count": 137, "id": "8a41b2ef", "metadata": {}, "outputs": [], @@ -951,7 +412,7 @@ }, { "cell_type": "code", - "execution_count": 59, + "execution_count": 138, "id": "8c9e5f87", "metadata": {}, "outputs": [], @@ -966,7 +427,7 @@ }, { "cell_type": "code", - "execution_count": 60, + "execution_count": 139, "id": "cdf43afb", "metadata": {}, "outputs": [], @@ -976,7 +437,7 @@ }, { "cell_type": "code", - "execution_count": 61, + "execution_count": 140, "id": "c4c4df30", "metadata": {}, "outputs": [], @@ -986,7 +447,7 @@ }, { "cell_type": "code", - "execution_count": 62, + "execution_count": 141, "id": "9adb2703", "metadata": {}, "outputs": [], @@ -997,7 +458,7 @@ }, { "cell_type": "code", - "execution_count": 63, + "execution_count": 142, "id": "50e6cf5f", "metadata": {}, "outputs": [], @@ -1007,7 +468,7 @@ }, { "cell_type": "code", - "execution_count": 64, + "execution_count": 144, "id": "2833671c", "metadata": {}, "outputs": [],
--- a/input.csv_table.csv Tue Jun 29 05:20:41 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,10 +0,0 @@ -Strain name,Resistance_phenotype,Imipenem,Meropenem,Ciprofloxacin,Piperacillin/ tazobactam,Ticarcillin/clavulanic acid,Ceftriaxone,Ceftazidime,Cefepime,Trimethoprim/ sulfamethoxazole,Ampicillin/ sulbactam,Colistin,Polymyxin B -Acinetobacter baumannii A85,,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Strain could not be classified Intermediate,NA -Acinetobacter baumannii AB307-0294,,Susceptible,Susceptible,NA,Strain could not be classified,NA,Intermediate,NA,Susceptible,NA,Strain could not be classified,NA,NA -Acinetobacter baumannii AB5075-UW,,NA,NA,Resistant,NA,NA,NA,Resistant,Resistant,NA,NA,NA,NA -Acinetobacter baumannii DU202,,NA,NA,NA,Strain could not be classified,Resistant,NA,NA,NA,Resistant,Strain could not be classified,Strain could not be classified,NA -Acinetobacter baumannii ORAB01,,NA,NA,NA,Intermediate,NA,NA,NA,NA,NA,NA,NA,NA -Acinetobacter baumannii strain FDA-CDC-AR_0305,,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Strain could not be classified -Acinetobacter baumannii strain FDA-CDC-AR_0306,,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Strain could not be classified -Acinetobacter baumannii strain FDA-CDC-AR_0307,,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Resistant -Acinetobacter baumannii strain FDA-CDC-AR_0308,,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Resistant
--- a/output.csv Tue Jun 29 05:20:41 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,10 +0,0 @@ -Strain name,Resistance_phenotype,Imipenem,Meropenem,Ciprofloxacin,Piperacillin/tazobactam,Ticarcillin/clavulanicacid,Ceftriaxone,Ceftazidime,Cefepime,Trimethoprim/sulfamethoxazole,Ampicillin/sulbactam,Colistin,Polymyxinb -Acinetobacter baumannii A85,,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Susceptible,NA -Acinetobacter baumannii AB307-0294,,Susceptible,Susceptible,NA,Strain could not classified,NA,Intermediate,NA,Susceptible,NA,Strain could not classified,NA,NA -Acinetobacter baumannii AB5075-UW,,NA,NA,Resistant,NA,NA,NA,Resistant,Resistant,NA,NA,NA,NA -Acinetobacter baumannii DU202,,NA,NA,NA,Strain could not classified,Resistant,NA,NA,NA,Resistant,Strain could not classified,Strain could not classified,NA -Acinetobacter baumannii ORAB01,,NA,NA,NA,Intermediate,NA,NA,NA,NA,NA,NA,NA,NA -Acinetobacter baumannii strain FDA-CDC-AR_0305,,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Susceptible -Acinetobacter baumannii strain FDA-CDC-AR_0306,,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Susceptible -Acinetobacter baumannii strain FDA-CDC-AR_0307,,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Resistant -Acinetobacter baumannii strain FDA-CDC-AR_0308,,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Resistant
--- a/suite_config.xml Tue Jun 29 05:20:41 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,9 +0,0 @@ -<suite id='suite_asist_tools' name='Suite of ASIST tools' version="1.0.0"> - <description>This suite contains clsi_profile and asist files and wrappers for Galaxy</description> - <tool id="clsi_profile" name="CLSI Profile" version="0.1.6" python_template_version="3.5"> - <description>MIC profile using CLSI MIC breakpoints</description> - </tool> - <tool id="asist" name="ASIST" version="1.0.1" python_template_version="3.5"> - <description>Antimicrobial Susceptibility standards based phenotypes</description> - </tool> -</suite>
--- a/test-data/asist_input.csv Tue Jun 29 05:20:41 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -Strain name,Resistance_phenotype,Amikacin,Tobramycin,Gentamycin,Imipenem,Meropenam,Doripenem,Ciprofloxacin,Levofloxacin,Piperacillin/tazobactam,Ticarcillin/clavulanic acid,Cefotaxime,Ceftriaxone,Ceftazidime,Cefepime,Trimethoprim/sulfamethoxazole,Ampicillin/sulbactam,Colistin,polymyxin B,Tetracycline,Doxicycline ,Minocycline -Strain name,Resistance_phenotype,Aminoglycoside,Aminoglycoside,Aminoglycoside,Beta-lactams-Carbapenems,Beta-lactams-Carbapenems,Carbapenem ,Fluoroquinolone,Fluoroquinolone,Beta-lactam inhibitor,Beta-lactam inhibitor,Cephalosporin,Cephalosporin,Cephalosporin,Cephalosporin,Sulfonamides,Penicillins/beta-lactamase,Polymyxins,Polymyxins,Tetracycline,Tetracycline,Tetracycline -Acinetobacter baumannii strain FDA-CDC-AR_0288,,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,NA,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,NA,Resistant -Acinetobacter baumannii strain FDA-CDC-AR_0303,,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,NA,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,NA,NA -Acinetobacter baumannii strain FDA-CDC-AR_0304,,NA,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,NA,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,NA,Resistant
--- a/test-data/asist_output.csv Tue Jun 29 05:20:41 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -Strain name,Strain phenotype,Resistance_phenotype,Amikacin,Tobramycin,Gentamycin,Imipenem,Meropenam,Doripenem,Ciprofloxacin,Levofloxacin,Piperacillin/ tazobactam,Ticarcillin/ clavulanic acid,Cefotaxime,Ceftriaxone,Ceftazidime,Cefepime,Trimethoprim/ sulfamethoxazole,Ampicillin/ sulbactam,Colistin,Polymyxin B,Tetracycline,Doxicycline,Minocycline -Strain name,Strain could not be classified,Resistance_phenotype,Aminoglycoside,Aminoglycoside,Aminoglycoside,Beta-lactams-Carbapenems,Beta-lactams-Carbapenems,Carbapenem ,Fluoroquinolone,Fluoroquinolone,Beta-lactam inhibitor,Beta-lactam inhibitor,Cephalosporin,Cephalosporin,Cephalosporin,Cephalosporin,Sulfonamides,Penicillins/beta-lactamase,Polymyxins,Polymyxins,Tetracycline,Tetracycline,Tetracycline -Acinetobacter baumannii strain FDA-CDC-AR_0288,Possible TDR,,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,NA,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,NA,Resistant -Acinetobacter baumannii strain FDA-CDC-AR_0303,Possible TDR,,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,NA,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,NA,NA -Acinetobacter baumannii strain FDA-CDC-AR_0304,Possible TDR,,NA,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,NA,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,Resistant,NA,Resistant
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/input2_table.csv Tue Jun 29 12:15:06 2021 +0000 @@ -0,0 +1,3037 @@ +,Strain name,Antibiotics,MIC +81,Acinetobacter baumannii BJAB0868,imipenem,16 +82,Acinetobacter baumannii BJAB0868,meropenem,64 +83,Acinetobacter baumannii BJAB0868,Levofloxacin,8 +84,Acinetobacter baumannii BJAB0868,Cefotaxime,>256 +85,Acinetobacter baumannii BJAB0868,Cefepime,>256 +86,Acinetobacter baumannii BJAB0868,polymyxin B,2 +87,Acinetobacter baumannii BJAB0868,polymyxin B,>16 +109,Acinetobacter baumannii HRAB-85,Cefuroxime,64 +124,Acinetobacter baumannii HRAB-85,Gentamicin,16 +236,Acinetobacter baumannii strain MRSN11659,amikacin,8 +238,Acinetobacter baumannii strain MRSN11660,amikacin,8 +240,Acinetobacter baumannii strain MRSN11669,amikacin,16 +242,Acinetobacter baumannii strain MRSN11674,amikacin,32 +244,Acinetobacter baumannii strain MRSN11675,amikacin,32 +246,Acinetobacter baumannii strain MRSN11679,amikacin,32 +252,Acinetobacter baumannii strain MRSN11688,amikacin,32 +258,Acinetobacter baumannii strain MRSN11701,amikacin,32 +260,Acinetobacter baumannii strain MRSN11705,amikacin,32 +262,Acinetobacter baumannii strain MRSN11706,amikacin,32 +267,Acinetobacter baumannii strain MRSN11710,amikacin,32 +270,Acinetobacter baumannii strain MRSN11713,amikacin,32 +277,Acinetobacter baumannii strain MRSN11723,amikacin,32 +282,Acinetobacter baumannii strain MRSN11729,amikacin,16 +288,Acinetobacter baumannii strain MRSN11739,amikacin,32 +290,Acinetobacter baumannii strain MRSN11742,amikacin,32 +293,Acinetobacter baumannii strain MRSN11745,amikacin,32 +295,Acinetobacter baumannii strain MRSN11746,amikacin,32 +297,Acinetobacter baumannii strain MRSN11747,amikacin,32 +300,Acinetobacter baumannii strain MRSN11749,amikacin,8 +302,Acinetobacter baumannii strain MRSN11750,amikacin,16 +313,Acinetobacter baumannii strain MRSN11765,amikacin,16 +320,Acinetobacter baumannii strain MRSN11772,amikacin,32 +322,Acinetobacter baumannii strain MRSN11774,amikacin,32 +332,Acinetobacter baumannii strain MRSN11803,amikacin,32 +334,Acinetobacter baumannii strain MRSN11804,amikacin,32 +336,Acinetobacter baumannii strain MRSN11806,amikacin,8 +338,Acinetobacter baumannii strain MRSN11807,amikacin,8 +340,Acinetobacter baumannii strain MRSN11811,amikacin,16 +342,Acinetobacter baumannii strain MRSN11812,amikacin,32 +344,Acinetobacter baumannii strain MRSN11813,amikacin,8 +346,Acinetobacter baumannii strain MRSN11815,amikacin,8 +348,Acinetobacter baumannii strain MRSN11816,amikacin,16 +350,Acinetobacter baumannii strain MRSN11819,amikacin,8 +352,Acinetobacter baumannii strain MRSN11820,amikacin,32 +354,Acinetobacter baumannii strain MRSN11821,amikacin,16 +356,Acinetobacter baumannii strain MRSN11822,amikacin,16 +358,Acinetobacter baumannii strain MRSN11823,amikacin,8 +360,Acinetobacter baumannii strain MRSN11826,amikacin,8 +363,Acinetobacter baumannii strain MRSN1309,amikacin,8 +365,Acinetobacter baumannii strain MRSN1339,amikacin,8 +366,Acinetobacter baumannii strain MRSN1339,amikacin,2 +368,Acinetobacter baumannii strain MRSN1410,amikacin,32 +370,Acinetobacter baumannii strain MRSN1420,amikacin,8 +372,Acinetobacter baumannii strain MRSN1428,amikacin,8 +374,Acinetobacter baumannii strain MRSN1439,amikacin,2 +376,Acinetobacter baumannii strain MRSN1449,amikacin,8 +378,Acinetobacter baumannii strain MRSN1450,amikacin,32 +380,Acinetobacter baumannii strain MRSN1461,amikacin,64 +384,Acinetobacter baumannii strain MRSN15039,amikacin,32 +386,Acinetobacter baumannii strain MRSN15042,amikacin,8 +390,Acinetobacter baumannii strain MRSN15045,amikacin,16 +392,Acinetobacter baumannii strain MRSN15046,amikacin,16 +395,Acinetobacter baumannii strain MRSN15048,amikacin,16 +398,Acinetobacter baumannii strain MRSN15065,amikacin,16 +400,Acinetobacter baumannii strain MRSN15066,amikacin,32 +404,Acinetobacter baumannii strain MRSN15070,amikacin,8 +412,Acinetobacter baumannii strain MRSN15079,amikacin,32 +418,Acinetobacter baumannii strain MRSN15084,amikacin,32 +419,Acinetobacter baumannii strain MRSN15084,amikacin,32 +421,Acinetobacter baumannii strain MRSN15086,amikacin,32 +425,Acinetobacter baumannii strain MRSN1551,amikacin,8 +427,Acinetobacter baumannii strain MRSN1598,amikacin,2 +429,Acinetobacter baumannii strain MRSN16874,amikacin,32 +432,Acinetobacter baumannii strain MRSN16882,amikacin,32 +438,Acinetobacter baumannii strain MRSN1738,amikacin,64 +441,Acinetobacter baumannii strain MRSN1967,amikacin,32 +445,Acinetobacter baumannii strain MRSN1980,amikacin,8 +447,Acinetobacter baumannii strain MRSN1987,amikacin,64 +449,Acinetobacter baumannii strain MRSN1988,amikacin,8 +451,Acinetobacter baumannii strain MRSN1992,amikacin,2 +454,Acinetobacter baumannii strain MRSN2009,amikacin,8 +456,Acinetobacter baumannii strain MRSN2024,amikacin,32 +458,Acinetobacter baumannii strain MRSN20315,amikacin,16 +460,Acinetobacter baumannii strain MRSN20755,amikacin,8 +462,Acinetobacter baumannii strain MRSN2427,amikacin,32 +464,Acinetobacter baumannii strain MRSN2441,amikacin,32 +466,Acinetobacter baumannii strain MRSN2821,amikacin,4 +468,Acinetobacter baumannii strain MRSN2830,amikacin,4 +470,Acinetobacter baumannii strain MRSN2839,amikacin,32 +472,Acinetobacter baumannii strain MRSN2840,amikacin,32 +474,Acinetobacter baumannii strain MRSN3360,amikacin,2 +476,Acinetobacter baumannii strain MRSN3547,amikacin,64 +479,Acinetobacter baumannii strain MRSN3843,amikacin,2 +482,Acinetobacter baumannii strain MRSN4119,amikacin,32 +485,Acinetobacter baumannii strain MRSN5540,amikacin,32 +487,Acinetobacter baumannii strain MRSN6269,amikacin,32 +491,Acinetobacter baumannii strain MRSN7069,amikacin,8 +494,Acinetobacter baumannii strain MRSN7072,amikacin,32 +500,Acinetobacter baumannii strain MRSN7081,amikacin,16 +503,Acinetobacter baumannii strain MRSN7086,amikacin,8 +510,Acinetobacter baumannii strain MRSN7108,amikacin,16 +523,Acinetobacter baumannii strain MRSN7128,amikacin,32 +529,Acinetobacter baumannii strain MRSN7134,amikacin,32 +539,Acinetobacter baumannii strain MRSN7147,amikacin,16 +542,Acinetobacter baumannii strain MRSN7149,amikacin,16 +546,Acinetobacter baumannii strain MRSN7154,amikacin,32 +548,Acinetobacter baumannii strain MRSN7155,amikacin,32 +554,Acinetobacter baumannii strain MRSN7160,amikacin,16 +556,Acinetobacter baumannii strain MRSN7161,amikacin,32 +567,Acinetobacter baumannii strain MRSN7173,amikacin,32 +572,Acinetobacter baumannii strain MRSN7184,amikacin,16 +578,Acinetobacter baumannii strain MRSN7204,amikacin,16 +588,Acinetobacter baumannii strain MRSN7220,amikacin,16 +592,Acinetobacter baumannii strain MRSN7223,amikacin,16 +600,Acinetobacter baumannii strain MRSN7232,amikacin,8 +602,Acinetobacter baumannii strain MRSN7234,amikacin,8 +604,Acinetobacter baumannii strain MRSN7235,amikacin,16 +606,Acinetobacter baumannii strain MRSN7236,amikacin,16 +609,Acinetobacter baumannii strain MRSN7238,amikacin,16 +625,Acinetobacter baumannii strain MRSN7257,amikacin,16 +636,Acinetobacter baumannii strain MRSN7273,amikacin,8 +641,Acinetobacter baumannii strain MRSN7279,amikacin,32 +644,Acinetobacter baumannii strain MRSN7281,amikacin,8 +647,Acinetobacter baumannii strain MRSN7284,amikacin,8 +662,Acinetobacter baumannii strain MRSN7304,amikacin,16 +664,Acinetobacter baumannii strain MRSN7305,amikacin,16 +666,Acinetobacter baumannii strain MRSN7306,amikacin,16 +669,Acinetobacter baumannii strain MRSN7309,amikacin,8 +671,Acinetobacter baumannii strain MRSN7310,amikacin,32 +674,Acinetobacter baumannii strain MRSN7314,amikacin,16 +681,Acinetobacter baumannii strain MRSN7324,amikacin,8 +686,Acinetobacter baumannii strain MRSN7328,amikacin,16 +688,Acinetobacter baumannii strain MRSN7330,amikacin,8 +695,Acinetobacter baumannii strain MRSN7344,amikacin,8 +697,Acinetobacter baumannii strain MRSN7345,amikacin,8 +700,Acinetobacter baumannii strain MRSN7347,amikacin,4 +703,Acinetobacter baumannii strain MRSN7349,amikacin,32 +705,Acinetobacter baumannii strain MRSN7350,amikacin,8 +710,Acinetobacter baumannii strain MRSN7354,amikacin,8 +712,Acinetobacter baumannii strain MRSN7355,amikacin,8 +715,Acinetobacter baumannii strain MRSN7357,amikacin,4 +717,Acinetobacter baumannii strain MRSN7359,amikacin,8 +720,Acinetobacter baumannii strain MRSN7361,amikacin,8 +723,Acinetobacter baumannii strain MRSN7363,amikacin,8 +726,Acinetobacter baumannii strain MRSN7365,amikacin,32 +728,Acinetobacter baumannii strain MRSN7366,amikacin,4 +732,Acinetobacter baumannii strain MRSN7370,amikacin,4 +734,Acinetobacter baumannii strain MRSN7372,amikacin,4 +736,Acinetobacter baumannii strain MRSN7373,amikacin,4 +738,Acinetobacter baumannii strain MRSN7375,amikacin,8 +741,Acinetobacter baumannii strain MRSN7377,amikacin,4 +743,Acinetobacter baumannii strain MRSN7378,amikacin,4 +745,Acinetobacter baumannii strain MRSN7379,amikacin,8 +747,Acinetobacter baumannii strain MRSN7380,amikacin,8 +753,Acinetobacter baumannii strain MRSN7386,amikacin,8 +755,Acinetobacter baumannii strain MRSN7387,amikacin,4 +757,Acinetobacter baumannii strain MRSN7388,amikacin,8 +759,Acinetobacter baumannii strain MRSN7389,amikacin,8 +761,Acinetobacter baumannii strain MRSN7390,amikacin,8 +763,Acinetobacter baumannii strain MRSN7391,amikacin,8 +765,Acinetobacter baumannii strain MRSN7392,amikacin,8 +768,Acinetobacter baumannii strain MRSN7394,amikacin,4 +772,Acinetobacter baumannii strain MRSN7401,amikacin,4 +774,Acinetobacter baumannii strain MRSN7402,amikacin,8 +776,Acinetobacter baumannii strain MRSN7403,amikacin,8 +778,Acinetobacter baumannii strain MRSN7404,amikacin,4 +780,Acinetobacter baumannii strain MRSN7405,amikacin,32 +783,Acinetobacter baumannii strain MRSN7408,amikacin,4 +785,Acinetobacter baumannii strain MRSN7409,amikacin,4 +788,Acinetobacter baumannii strain MRSN7411,amikacin,8 +791,Acinetobacter baumannii strain MRSN7413,amikacin,4 +793,Acinetobacter baumannii strain MRSN7414,amikacin,4 +796,Acinetobacter baumannii strain MRSN7416,amikacin,8 +798,Acinetobacter baumannii strain MRSN7417,amikacin,8 +800,Acinetobacter baumannii strain MRSN7418,amikacin,8 +802,Acinetobacter baumannii strain MRSN7419,amikacin,8 +805,Acinetobacter baumannii strain MRSN7421,amikacin,8 +807,Acinetobacter baumannii strain MRSN7423,amikacin,4 +813,Acinetobacter baumannii strain MRSN7438,amikacin,8 +816,Acinetobacter baumannii strain MRSN7441,amikacin,8 +819,Acinetobacter baumannii strain MRSN7447,amikacin,32 +821,Acinetobacter baumannii strain MRSN7448,amikacin,32 +823,Acinetobacter baumannii strain MRSN7454,amikacin,4 +825,Acinetobacter baumannii strain MRSN7455,amikacin,4 +828,Acinetobacter baumannii strain MRSN7457,amikacin,4 +831,Acinetobacter baumannii strain MRSN7459,amikacin,8 +833,Acinetobacter baumannii strain MRSN7460,amikacin,4 +835,Acinetobacter baumannii strain MRSN7461,amikacin,8 +837,Acinetobacter baumannii strain MRSN7462,amikacin,8 +841,Acinetobacter baumannii strain MRSN7467,amikacin,8 +843,Acinetobacter baumannii strain MRSN7468,amikacin,32 +845,Acinetobacter baumannii strain MRSN7469,amikacin,32 +850,Acinetobacter baumannii strain MRSN7474,amikacin,8 +852,Acinetobacter baumannii strain MRSN7475,amikacin,4 +855,Acinetobacter baumannii strain MRSN7478,amikacin,8 +858,Acinetobacter baumannii strain MRSN7481,amikacin,4 +863,Acinetobacter baumannii strain MRSN7485,amikacin,8 +872,Acinetobacter baumannii strain MRSN7497,amikacin,8 +874,Acinetobacter baumannii strain MRSN7498,amikacin,4 +891,Acinetobacter baumannii strain MRSN7521,amikacin,32 +909,Acinetobacter baumannii strain MRSN7557,amikacin,32 +912,Acinetobacter baumannii strain MRSN7560,amikacin,8 +921,Acinetobacter baumannii strain MRSN7570,amikacin,32 +939,Acinetobacter baumannii strain MRSN7599,amikacin,8 +954,Acinetobacter baumannii strain MRSN7629,amikacin,8 +970,Acinetobacter baumannii strain MRSN7655,amikacin,8 +975,Acinetobacter baumannii strain MRSN7660,amikacin,4 +979,Acinetobacter baumannii strain MRSN7668,amikacin,8 +982,Acinetobacter baumannii strain MRSN7670,amikacin,32 +990,Acinetobacter baumannii strain MRSN7677,amikacin,32 +1008,Acinetobacter baumannii strain MRSN7707,amikacin,8 +1018,Acinetobacter baumannii strain MRSN7718,amikacin,4 +1026,Acinetobacter baumannii strain MRSN7730,amikacin,32 +1034,Acinetobacter baumannii strain MRSN7751,amikacin,32 +1045,Acinetobacter baumannii strain MRSN7776,amikacin,32 +1052,Acinetobacter baumannii strain MRSN7790,amikacin,16 +1070,Acinetobacter baumannii strain MRSN7822,amikacin,16 +1078,Acinetobacter baumannii strain MRSN83,amikacin,32 +1079,Acinetobacter baumannii strain MRSN83,amikacin,64 +1081,Acinetobacter baumannii strain MRSN85,amikacin,32 +1086,Acinetobacter baumannii strain MRSN888,amikacin,8 +1089,Acinetobacter baumannii strain MRSN8899,amikacin,32 +1091,Acinetobacter baumannii strain MRSN89,amikacin,32 +1092,Acinetobacter baumannii strain MRSN89,amikacin,32 +1094,Acinetobacter baumannii strain MRSN8900,amikacin,32 +1096,Acinetobacter baumannii strain MRSN8901,amikacin,8 +1098,Acinetobacter baumannii strain MRSN8902,amikacin,32 +1100,Acinetobacter baumannii strain MRSN8903,amikacin,32 +1104,Acinetobacter baumannii strain MRSN899,amikacin,64 +1107,Acinetobacter baumannii strain MRSN908,amikacin,32 +1108,Acinetobacter baumannii strain MRSN908,amikacin,64 +1110,Acinetobacter baumannii strain MRSN910,amikacin,8 +1112,Acinetobacter baumannii strain MRSN915,amikacin,2 +1115,Acinetobacter baumannii strain MRSN919,amikacin,32 +1118,Acinetobacter baumannii strain MRSN929,amikacin,32 +1121,Acinetobacter baumannii strain MRSN953,amikacin,8 +1238,Acinetobacter baumannii strain MRSN15038,ampicillin,32 +1265,Acinetobacter baumannii strain MRSN15084,ampicillin,32 +1633,Acinetobacter baumannii strain MRSN7557,ampicillin,32 +1675,Acinetobacter baumannii strain MRSN7629,ampicillin,32 +1787,Acinetobacter baumannii strain MRSN7834,ampicillin,16 +1790,Acinetobacter baumannii strain MRSN85,ampicillin,16 +1865,Acinetobacter baumannii strain MRSN10371,ampicillin/sulbactam, 16/8 +1870,Acinetobacter baumannii strain MRSN11660,ampicillin/sulbactam, 16/8 +1872,Acinetobacter baumannii strain MRSN11669,ampicillin/sulbactam, 8/4 +1874,Acinetobacter baumannii strain MRSN11674,ampicillin/sulbactam, 32/16 +1886,Acinetobacter baumannii strain MRSN11701,ampicillin/sulbactam, 8/4 +1891,Acinetobacter baumannii strain MRSN11708,ampicillin/sulbactam, 16/8 +1905,Acinetobacter baumannii strain MRSN11729,ampicillin/sulbactam, 8/4 +1911,Acinetobacter baumannii strain MRSN11739,ampicillin/sulbactam, 16/8 +1913,Acinetobacter baumannii strain MRSN11742,ampicillin/sulbactam, 8/4 +1917,Acinetobacter baumannii strain MRSN11746,ampicillin/sulbactam, 32/16 +1921,Acinetobacter baumannii strain MRSN11749,ampicillin/sulbactam, 4/2 +1923,Acinetobacter baumannii strain MRSN11750,ampicillin/sulbactam, 4/2 +1925,Acinetobacter baumannii strain MRSN11753,ampicillin/sulbactam, 8/4 +1929,Acinetobacter baumannii strain MRSN11760,ampicillin/sulbactam, 32/16 +1935,Acinetobacter baumannii strain MRSN11765,ampicillin/sulbactam, 2/1 +1942,Acinetobacter baumannii strain MRSN11774,ampicillin/sulbactam, 16/8 +1952,Acinetobacter baumannii strain MRSN11801,ampicillin/sulbactam, 8/4 +1954,Acinetobacter baumannii strain MRSN11803,ampicillin/sulbactam, 8/4 +1956,Acinetobacter baumannii strain MRSN11804,ampicillin/sulbactam, 8/4 +1958,Acinetobacter baumannii strain MRSN11806,ampicillin/sulbactam, 32/16 +1960,Acinetobacter baumannii strain MRSN11807,ampicillin/sulbactam, 16/8 +1962,Acinetobacter baumannii strain MRSN11811,ampicillin/sulbactam, 16/8 +1964,Acinetobacter baumannii strain MRSN11812,ampicillin/sulbactam, 8/4 +1966,Acinetobacter baumannii strain MRSN11813,ampicillin/sulbactam, 16/8 +1968,Acinetobacter baumannii strain MRSN11815,ampicillin/sulbactam, 8/4 +1970,Acinetobacter baumannii strain MRSN11816,ampicillin/sulbactam, 8/4 +1972,Acinetobacter baumannii strain MRSN11819,ampicillin/sulbactam, 8/4 +1974,Acinetobacter baumannii strain MRSN11820,ampicillin/sulbactam, 32/16 +1976,Acinetobacter baumannii strain MRSN11821,ampicillin/sulbactam, 2/1 +1978,Acinetobacter baumannii strain MRSN11822,ampicillin/sulbactam, 8/4 +1980,Acinetobacter baumannii strain MRSN11823,ampicillin/sulbactam, 32/16 +1983,Acinetobacter baumannii strain MRSN11826,ampicillin/sulbactam, 2/1 +1987,Acinetobacter baumannii strain MRSN1339,ampicillin/sulbactam, 8/4 +1997,Acinetobacter baumannii strain MRSN15039,ampicillin/sulbactam, 32/16 +2002,Acinetobacter baumannii strain MRSN15045,ampicillin/sulbactam, 2/1 +2004,Acinetobacter baumannii strain MRSN15046,ampicillin/sulbactam, 2/1 +2007,Acinetobacter baumannii strain MRSN15048,ampicillin/sulbactam, 16/8 +2020,Acinetobacter baumannii strain MRSN15081,ampicillin/sulbactam, 32/16 +2024,Acinetobacter baumannii strain MRSN15084,ampicillin/sulbactam, 4/2 +2025,Acinetobacter baumannii strain MRSN15084,ampicillin/sulbactam, 8/4 +2027,Acinetobacter baumannii strain MRSN15085,ampicillin/sulbactam, 32/16 +2029,Acinetobacter baumannii strain MRSN15086,ampicillin/sulbactam, 8/4 +2036,Acinetobacter baumannii strain MRSN16881,ampicillin/sulbactam, 32/16 +2038,Acinetobacter baumannii strain MRSN16882,ampicillin/sulbactam, 32/16 +2040,Acinetobacter baumannii strain MRSN16896,ampicillin/sulbactam, 4/2 +2042,Acinetobacter baumannii strain MRSN16897,ampicillin/sulbactam, 4/2 +2044,Acinetobacter baumannii strain MRSN16898,ampicillin/sulbactam, 8/4 +2046,Acinetobacter baumannii strain MRSN16901,ampicillin/sulbactam, 4/2 +2049,Acinetobacter baumannii strain MRSN17592,ampicillin/sulbactam, 2/1 +2051,Acinetobacter baumannii strain MRSN17593,ampicillin/sulbactam, 4/2 +2064,Acinetobacter baumannii strain MRSN20755,ampicillin/sulbactam, 32/16 +2066,Acinetobacter baumannii strain MRSN2427,ampicillin/sulbactam, 8/4 +2068,Acinetobacter baumannii strain MRSN2441,ampicillin/sulbactam, 8/4 +2070,Acinetobacter baumannii strain MRSN2821,ampicillin/sulbactam, 8/4 +2072,Acinetobacter baumannii strain MRSN2830,ampicillin/sulbactam, 2/1 +2074,Acinetobacter baumannii strain MRSN2839,ampicillin/sulbactam, 16/8 +2076,Acinetobacter baumannii strain MRSN2840,ampicillin/sulbactam, 16/8 +2082,Acinetobacter baumannii strain MRSN3941,ampicillin/sulbactam, 8/4 +2084,Acinetobacter baumannii strain MRSN4119,ampicillin/sulbactam, 8/4 +2088,Acinetobacter baumannii strain MRSN6269,ampicillin/sulbactam, 4/2 +2090,Acinetobacter baumannii strain MRSN6273,ampicillin/sulbactam, 8/4 +2094,Acinetobacter baumannii strain MRSN7072,ampicillin/sulbactam, 32/16 +2100,Acinetobacter baumannii strain MRSN7081,ampicillin/sulbactam, 32/16 +2103,Acinetobacter baumannii strain MRSN7086,ampicillin/sulbactam, 8/4 +2111,Acinetobacter baumannii strain MRSN7108,ampicillin/sulbactam, 32/16 +2129,Acinetobacter baumannii strain MRSN7134,ampicillin/sulbactam, 4/2 +2139,Acinetobacter baumannii strain MRSN7147,ampicillin/sulbactam, 8/4 +2144,Acinetobacter baumannii strain MRSN7154,ampicillin/sulbactam, 16/8 +2146,Acinetobacter baumannii strain MRSN7155,ampicillin/sulbactam, 4/2 +2152,Acinetobacter baumannii strain MRSN7161,ampicillin/sulbactam, 8/4 +2161,Acinetobacter baumannii strain MRSN7170,ampicillin/sulbactam, 4/2 +2165,Acinetobacter baumannii strain MRSN7173,ampicillin/sulbactam, 4/2 +2174,Acinetobacter baumannii strain MRSN7204,ampicillin/sulbactam, 4/2 +2185,Acinetobacter baumannii strain MRSN7220,ampicillin/sulbactam, 16/8 +2188,Acinetobacter baumannii strain MRSN7222,ampicillin/sulbactam, 16/8 +2197,Acinetobacter baumannii strain MRSN7232,ampicillin/sulbactam, 32/16 +2199,Acinetobacter baumannii strain MRSN7234,ampicillin/sulbactam, 16/8 +2201,Acinetobacter baumannii strain MRSN7235,ampicillin/sulbactam, 32/16 +2203,Acinetobacter baumannii strain MRSN7236,ampicillin/sulbactam, 16/8 +2205,Acinetobacter baumannii strain MRSN7238,ampicillin/sulbactam, 16/8 +2234,Acinetobacter baumannii strain MRSN7279,ampicillin/sulbactam, 16/8 +2253,Acinetobacter baumannii strain MRSN7305,ampicillin/sulbactam, 4/2 +2257,Acinetobacter baumannii strain MRSN7310,ampicillin/sulbactam, 16/8 +2270,Acinetobacter baumannii strain MRSN7328,ampicillin/sulbactam, 8/4 +2272,Acinetobacter baumannii strain MRSN7330,ampicillin/sulbactam, 8/4 +2279,Acinetobacter baumannii strain MRSN7344,ampicillin/sulbactam, 16/8 +2281,Acinetobacter baumannii strain MRSN7345,ampicillin/sulbactam, 2/1 +2284,Acinetobacter baumannii strain MRSN7347,ampicillin/sulbactam, 8/4 +2287,Acinetobacter baumannii strain MRSN7349,ampicillin/sulbactam, 32/16 +2293,Acinetobacter baumannii strain MRSN7354,ampicillin/sulbactam, 4/2 +2302,Acinetobacter baumannii strain MRSN7365,ampicillin/sulbactam, 16/8 +2308,Acinetobacter baumannii strain MRSN7372,ampicillin/sulbactam, 8/4 +2314,Acinetobacter baumannii strain MRSN7379,ampicillin/sulbactam, 4/2 +2327,Acinetobacter baumannii strain MRSN7394,ampicillin/sulbactam, 4/2 +2334,Acinetobacter baumannii strain MRSN7404,ampicillin/sulbactam, 2/1 +2339,Acinetobacter baumannii strain MRSN7408,ampicillin/sulbactam, 8/4 +2341,Acinetobacter baumannii strain MRSN7409,ampicillin/sulbactam, 4/2 +2348,Acinetobacter baumannii strain MRSN7416,ampicillin/sulbactam, 4/2 +2350,Acinetobacter baumannii strain MRSN7417,ampicillin/sulbactam, 32/16 +2353,Acinetobacter baumannii strain MRSN7419,ampicillin/sulbactam, 4/2 +2357,Acinetobacter baumannii strain MRSN7423,ampicillin/sulbactam, 4/2 +2365,Acinetobacter baumannii strain MRSN7441,ampicillin/sulbactam, 16/8 +2369,Acinetobacter baumannii strain MRSN7448,ampicillin/sulbactam, 8/4 +2376,Acinetobacter baumannii strain MRSN7459,ampicillin/sulbactam, 4/2 +2378,Acinetobacter baumannii strain MRSN7460,ampicillin/sulbactam, 2/1 +2384,Acinetobacter baumannii strain MRSN7468,ampicillin/sulbactam, 32/16 +2390,Acinetobacter baumannii strain MRSN7474,ampicillin/sulbactam, 32/16 +2393,Acinetobacter baumannii strain MRSN7478,ampicillin/sulbactam, 16/8 +2400,Acinetobacter baumannii strain MRSN7485,ampicillin/sulbactam, 32/16 +2409,Acinetobacter baumannii strain MRSN7497,ampicillin/sulbactam, 16/8 +2426,Acinetobacter baumannii strain MRSN7521,ampicillin/sulbactam, 4/2 +2444,Acinetobacter baumannii strain MRSN7557,ampicillin/sulbactam, 8/4 +2455,Acinetobacter baumannii strain MRSN7570,ampicillin/sulbactam, 8/4 +2460,Acinetobacter baumannii strain MRSN7578,ampicillin/sulbactam, 8/4 +2475,Acinetobacter baumannii strain MRSN7605,ampicillin/sulbactam, 8/4 +2485,Acinetobacter baumannii strain MRSN7629,ampicillin/sulbactam, 16/8 +2501,Acinetobacter baumannii strain MRSN7655,ampicillin/sulbactam, 2/1 +2509,Acinetobacter baumannii strain MRSN7668,ampicillin/sulbactam, 32/16 +2535,Acinetobacter baumannii strain MRSN7707,ampicillin/sulbactam, 32/16 +2545,Acinetobacter baumannii strain MRSN7718,ampicillin/sulbactam, 16/8 +2573,Acinetobacter baumannii strain MRSN7790,ampicillin/sulbactam, 16/8 +2585,Acinetobacter baumannii strain MRSN7815,ampicillin/sulbactam, 8/4 +2592,Acinetobacter baumannii strain MRSN7822,ampicillin/sulbactam, 32/16 +2601,Acinetobacter baumannii strain MRSN85,ampicillin/sulbactam, 8/4 +2609,Acinetobacter baumannii strain MRSN8899,ampicillin/sulbactam, 32/16 +2612,Acinetobacter baumannii strain MRSN8900,ampicillin/sulbactam, 8/4 +2614,Acinetobacter baumannii strain MRSN8901,ampicillin/sulbactam, 8/4 +2616,Acinetobacter baumannii strain MRSN8902,ampicillin/sulbactam, 4/2 +2618,Acinetobacter baumannii strain MRSN8903,ampicillin/sulbactam, 32/16 +2640,Acinetobacter baumannii strain MRSN10371,aztreonam,64 +2643,Acinetobacter baumannii strain MRSN11653,aztreonam,16 +2645,Acinetobacter baumannii strain MRSN11659,aztreonam,16 +2647,Acinetobacter baumannii strain MRSN11660,aztreonam,16 +2649,Acinetobacter baumannii strain MRSN11669,aztreonam,16 +2651,Acinetobacter baumannii strain MRSN11674,aztreonam,64 +2653,Acinetobacter baumannii strain MRSN11675,aztreonam,16 +2655,Acinetobacter baumannii strain MRSN11679,aztreonam,16 +2661,Acinetobacter baumannii strain MRSN11688,aztreonam,16 +2667,Acinetobacter baumannii strain MRSN11701,aztreonam,16 +2672,Acinetobacter baumannii strain MRSN11708,aztreonam,16 +2677,Acinetobacter baumannii strain MRSN11713,aztreonam,16 +2684,Acinetobacter baumannii strain MRSN11723,aztreonam,64 +2689,Acinetobacter baumannii strain MRSN11729,aztreonam,16 +2695,Acinetobacter baumannii strain MRSN11739,aztreonam,64 +2697,Acinetobacter baumannii strain MRSN11742,aztreonam,16 +2700,Acinetobacter baumannii strain MRSN11745,aztreonam,16 +2702,Acinetobacter baumannii strain MRSN11746,aztreonam,64 +2704,Acinetobacter baumannii strain MRSN11747,aztreonam,16 +2707,Acinetobacter baumannii strain MRSN11749,aztreonam,16 +2709,Acinetobacter baumannii strain MRSN11750,aztreonam,16 +2712,Acinetobacter baumannii strain MRSN11753,aztreonam,32 +2716,Acinetobacter baumannii strain MRSN11760,aztreonam,64 +2728,Acinetobacter baumannii strain MRSN11772,aztreonam,64 +2730,Acinetobacter baumannii strain MRSN11774,aztreonam,16 +2737,Acinetobacter baumannii strain MRSN11783,aztreonam,16 +2740,Acinetobacter baumannii strain MRSN11788,aztreonam,64 +2747,Acinetobacter baumannii strain MRSN11797,aztreonam,64 +2750,Acinetobacter baumannii strain MRSN11803,aztreonam,64 +2752,Acinetobacter baumannii strain MRSN11804,aztreonam,16 +2754,Acinetobacter baumannii strain MRSN11806,aztreonam,64 +2756,Acinetobacter baumannii strain MRSN11807,aztreonam,64 +2758,Acinetobacter baumannii strain MRSN11811,aztreonam,16 +2760,Acinetobacter baumannii strain MRSN11812,aztreonam,64 +2762,Acinetobacter baumannii strain MRSN11813,aztreonam,64 +2765,Acinetobacter baumannii strain MRSN11816,aztreonam,32 +2767,Acinetobacter baumannii strain MRSN11820,aztreonam,16 +2770,Acinetobacter baumannii strain MRSN11822,aztreonam,64 +2772,Acinetobacter baumannii strain MRSN11823,aztreonam,16 +2774,Acinetobacter baumannii strain MRSN11825,aztreonam,16 +2779,Acinetobacter baumannii strain MRSN1339,aztreonam,32 +2789,Acinetobacter baumannii strain MRSN15038,aztreonam,64 +2791,Acinetobacter baumannii strain MRSN15039,aztreonam,16 +2796,Acinetobacter baumannii strain MRSN15045,aztreonam,32 +2800,Acinetobacter baumannii strain MRSN15048,aztreonam,16 +2803,Acinetobacter baumannii strain MRSN15065,aztreonam,16 +2805,Acinetobacter baumannii strain MRSN15066,aztreonam,32 +2816,Acinetobacter baumannii strain MRSN15079,aztreonam,64 +2819,Acinetobacter baumannii strain MRSN15081,aztreonam,64 +2823,Acinetobacter baumannii strain MRSN15084,aztreonam,16 +2824,Acinetobacter baumannii strain MRSN15084,aztreonam,64 +2826,Acinetobacter baumannii strain MRSN15085,aztreonam,64 +2833,Acinetobacter baumannii strain MRSN16874,aztreonam,16 +2835,Acinetobacter baumannii strain MRSN16881,aztreonam,32 +2837,Acinetobacter baumannii strain MRSN16882,aztreonam,16 +2844,Acinetobacter baumannii strain MRSN17593,aztreonam,16 +2857,Acinetobacter baumannii strain MRSN20315,aztreonam,64 +2859,Acinetobacter baumannii strain MRSN20755,aztreonam,16 +3108,Acinetobacter baumannii strain MRSN7411,aztreonam,16 +3153,Acinetobacter baumannii strain MRSN7481,aztreonam,16 +3183,Acinetobacter baumannii strain MRSN7521,aztreonam,16 +3240,Acinetobacter baumannii strain MRSN7629,aztreonam,16 +3305,Acinetobacter baumannii strain MRSN7730,aztreonam,64 +3313,Acinetobacter baumannii strain MRSN7751,aztreonam,16 +3324,Acinetobacter baumannii strain MRSN7776,aztreonam,64 +3331,Acinetobacter baumannii strain MRSN7790,aztreonam,16 +3344,Acinetobacter baumannii strain MRSN7815,aztreonam,16 +3351,Acinetobacter baumannii strain MRSN7822,aztreonam,16 +3367,Acinetobacter baumannii strain MRSN8899,aztreonam,32 +3371,Acinetobacter baumannii strain MRSN8900,aztreonam,64 +3373,Acinetobacter baumannii strain MRSN8901,aztreonam,64 +3375,Acinetobacter baumannii strain MRSN8902,aztreonam,16 +3377,Acinetobacter baumannii strain MRSN8903,aztreonam,64 +3383,Acinetobacter baumannii strain MRSN908,aztreonam,64 +3511,Acinetobacter baumannii strain MRSN15038,cefazolin,64 +3538,Acinetobacter baumannii strain MRSN15084,cefazolin,64 +3906,Acinetobacter baumannii strain MRSN7557,cefazolin,64 +3948,Acinetobacter baumannii strain MRSN7629,cefazolin,64 +4060,Acinetobacter baumannii strain MRSN7834,cefazolin,64 +4332,Acinetobacter baumannii strain MRSN15084,cefotaxime,32 +5471,Acinetobacter baumannii strain MRSN10371,ceftazidime,64 +5472,Acinetobacter baumannii strain MRSN10371,ceftazidime,16 +5475,Acinetobacter baumannii strain MRSN11653,ceftazidime,16 +5476,Acinetobacter baumannii strain MRSN11653,ceftazidime,64 +5478,Acinetobacter baumannii strain MRSN11659,ceftazidime,16 +5479,Acinetobacter baumannii strain MRSN11659,ceftazidime,64 +5481,Acinetobacter baumannii strain MRSN11660,ceftazidime,64 +5482,Acinetobacter baumannii strain MRSN11660,ceftazidime,16 +5484,Acinetobacter baumannii strain MRSN11669,ceftazidime,8 +5486,Acinetobacter baumannii strain MRSN11674,ceftazidime,16 +5487,Acinetobacter baumannii strain MRSN11674,ceftazidime,16 +5489,Acinetobacter baumannii strain MRSN11675,ceftazidime,16 +5491,Acinetobacter baumannii strain MRSN11679,ceftazidime,16 +5492,Acinetobacter baumannii strain MRSN11679,ceftazidime,64 +5498,Acinetobacter baumannii strain MRSN11688,ceftazidime,16 +5499,Acinetobacter baumannii strain MRSN11688,ceftazidime,16 +5505,Acinetobacter baumannii strain MRSN11701,ceftazidime,16 +5506,Acinetobacter baumannii strain MRSN11701,ceftazidime,64 +5511,Acinetobacter baumannii strain MRSN11708,ceftazidime,16 +5512,Acinetobacter baumannii strain MRSN11708,ceftazidime,16 +5522,Acinetobacter baumannii strain MRSN11723,ceftazidime,16 +5523,Acinetobacter baumannii strain MRSN11723,ceftazidime,64 +5528,Acinetobacter baumannii strain MRSN11729,ceftazidime,16 +5529,Acinetobacter baumannii strain MRSN11729,ceftazidime,16 +5534,Acinetobacter baumannii strain MRSN11739,ceftazidime,64 +5535,Acinetobacter baumannii strain MRSN11739,ceftazidime,16 +5537,Acinetobacter baumannii strain MRSN11742,ceftazidime,64 +5538,Acinetobacter baumannii strain MRSN11742,ceftazidime,16 +5541,Acinetobacter baumannii strain MRSN11745,ceftazidime,16 +5542,Acinetobacter baumannii strain MRSN11745,ceftazidime,64 +5544,Acinetobacter baumannii strain MRSN11746,ceftazidime,64 +5545,Acinetobacter baumannii strain MRSN11746,ceftazidime,16 +5547,Acinetobacter baumannii strain MRSN11747,ceftazidime,16 +5552,Acinetobacter baumannii strain MRSN11760,ceftazidime,16 +5553,Acinetobacter baumannii strain MRSN11760,ceftazidime,16 +5558,Acinetobacter baumannii strain MRSN11765,ceftazidime,4 +5559,Acinetobacter baumannii strain MRSN11765,ceftazidime,2 +5566,Acinetobacter baumannii strain MRSN11772,ceftazidime,16 +5567,Acinetobacter baumannii strain MRSN11772,ceftazidime,64 +5569,Acinetobacter baumannii strain MRSN11774,ceftazidime,64 +5570,Acinetobacter baumannii strain MRSN11774,ceftazidime,16 +5577,Acinetobacter baumannii strain MRSN11783,ceftazidime,16 +5580,Acinetobacter baumannii strain MRSN11788,ceftazidime,16 +5587,Acinetobacter baumannii strain MRSN11797,ceftazidime,16 +5590,Acinetobacter baumannii strain MRSN11803,ceftazidime,16 +5592,Acinetobacter baumannii strain MRSN11804,ceftazidime,16 +5594,Acinetobacter baumannii strain MRSN11806,ceftazidime,16 +5596,Acinetobacter baumannii strain MRSN11807,ceftazidime,16 +5598,Acinetobacter baumannii strain MRSN11811,ceftazidime,16 +5600,Acinetobacter baumannii strain MRSN11812,ceftazidime,16 +5602,Acinetobacter baumannii strain MRSN11813,ceftazidime,16 +5604,Acinetobacter baumannii strain MRSN11815,ceftazidime,4 +5606,Acinetobacter baumannii strain MRSN11816,ceftazidime,4 +5608,Acinetobacter baumannii strain MRSN11820,ceftazidime,16 +5610,Acinetobacter baumannii strain MRSN11821,ceftazidime,4 +5612,Acinetobacter baumannii strain MRSN11822,ceftazidime,8 +5614,Acinetobacter baumannii strain MRSN11823,ceftazidime,16 +5618,Acinetobacter baumannii strain MRSN1309,ceftazidime,64 +5620,Acinetobacter baumannii strain MRSN1339,ceftazidime,8 +5621,Acinetobacter baumannii strain MRSN1339,ceftazidime,4 +5623,Acinetobacter baumannii strain MRSN1410,ceftazidime,16 +5625,Acinetobacter baumannii strain MRSN1420,ceftazidime,64 +5627,Acinetobacter baumannii strain MRSN1428,ceftazidime,2 +5630,Acinetobacter baumannii strain MRSN1450,ceftazidime,16 +5632,Acinetobacter baumannii strain MRSN1461,ceftazidime,16 +5636,Acinetobacter baumannii strain MRSN15039,ceftazidime,16 +5640,Acinetobacter baumannii strain MRSN15045,ceftazidime,8 +5642,Acinetobacter baumannii strain MRSN15046,ceftazidime,4 +5645,Acinetobacter baumannii strain MRSN15048,ceftazidime,16 +5648,Acinetobacter baumannii strain MRSN15065,ceftazidime,16 +5650,Acinetobacter baumannii strain MRSN15066,ceftazidime,16 +5654,Acinetobacter baumannii strain MRSN15070,ceftazidime,4 +5662,Acinetobacter baumannii strain MRSN15079,ceftazidime,16 +5665,Acinetobacter baumannii strain MRSN15081,ceftazidime,16 +5669,Acinetobacter baumannii strain MRSN15084,ceftazidime,8 +5670,Acinetobacter baumannii strain MRSN15084,ceftazidime,8 +5672,Acinetobacter baumannii strain MRSN15085,ceftazidime,16 +5674,Acinetobacter baumannii strain MRSN15086,ceftazidime,8 +5678,Acinetobacter baumannii strain MRSN1551,ceftazidime,8 +5680,Acinetobacter baumannii strain MRSN1598,ceftazidime,4 +5682,Acinetobacter baumannii strain MRSN16874,ceftazidime,16 +5684,Acinetobacter baumannii strain MRSN16881,ceftazidime,4 +5686,Acinetobacter baumannii strain MRSN16882,ceftazidime,4 +5688,Acinetobacter baumannii strain MRSN16896,ceftazidime,2 +5690,Acinetobacter baumannii strain MRSN16897,ceftazidime,4 +5692,Acinetobacter baumannii strain MRSN16898,ceftazidime,4 +5694,Acinetobacter baumannii strain MRSN16901,ceftazidime,4 +5696,Acinetobacter baumannii strain MRSN1738,ceftazidime,64 +5699,Acinetobacter baumannii strain MRSN17593,ceftazidime,8 +5701,Acinetobacter baumannii strain MRSN1967,ceftazidime,16 +5705,Acinetobacter baumannii strain MRSN1987,ceftazidime,64 +5707,Acinetobacter baumannii strain MRSN1988,ceftazidime,64 +5709,Acinetobacter baumannii strain MRSN1992,ceftazidime,64 +5711,Acinetobacter baumannii strain MRSN1998,ceftazidime,16 +5714,Acinetobacter baumannii strain MRSN2021,ceftazidime,64 +5716,Acinetobacter baumannii strain MRSN2024,ceftazidime,16 +5718,Acinetobacter baumannii strain MRSN20315,ceftazidime,16 +5720,Acinetobacter baumannii strain MRSN20755,ceftazidime,16 +5722,Acinetobacter baumannii strain MRSN2427,ceftazidime,64 +5723,Acinetobacter baumannii strain MRSN2427,ceftazidime,16 +5725,Acinetobacter baumannii strain MRSN2441,ceftazidime,16 +5726,Acinetobacter baumannii strain MRSN2441,ceftazidime,16 +5728,Acinetobacter baumannii strain MRSN2821,ceftazidime,8 +5729,Acinetobacter baumannii strain MRSN2821,ceftazidime,4 +5731,Acinetobacter baumannii strain MRSN2830,ceftazidime,1 +5732,Acinetobacter baumannii strain MRSN2830,ceftazidime,2 +5734,Acinetobacter baumannii strain MRSN2839,ceftazidime,16 +5735,Acinetobacter baumannii strain MRSN2839,ceftazidime,16 +5737,Acinetobacter baumannii strain MRSN2840,ceftazidime,16 +5738,Acinetobacter baumannii strain MRSN2840,ceftazidime,64 +5740,Acinetobacter baumannii strain MRSN3360,ceftazidime,4 +5742,Acinetobacter baumannii strain MRSN3547,ceftazidime,16 +5744,Acinetobacter baumannii strain MRSN3607,ceftazidime,16 +5746,Acinetobacter baumannii strain MRSN3843,ceftazidime,4 +5748,Acinetobacter baumannii strain MRSN3851,ceftazidime,16 +5750,Acinetobacter baumannii strain MRSN3941,ceftazidime,16 +5751,Acinetobacter baumannii strain MRSN3941,ceftazidime,16 +5753,Acinetobacter baumannii strain MRSN4119,ceftazidime,64 +5754,Acinetobacter baumannii strain MRSN4119,ceftazidime,16 +5756,Acinetobacter baumannii strain MRSN4481,ceftazidime,16 +5758,Acinetobacter baumannii strain MRSN5540,ceftazidime,64 +5759,Acinetobacter baumannii strain MRSN5540,ceftazidime,16 +5761,Acinetobacter baumannii strain MRSN6269,ceftazidime,16 +5762,Acinetobacter baumannii strain MRSN6269,ceftazidime,64 +5764,Acinetobacter baumannii strain MRSN6273,ceftazidime,16 +5765,Acinetobacter baumannii strain MRSN6273,ceftazidime,64 +5768,Acinetobacter baumannii strain MRSN7069,ceftazidime,8 +5771,Acinetobacter baumannii strain MRSN7072,ceftazidime,16 +5772,Acinetobacter baumannii strain MRSN7072,ceftazidime,64 +5778,Acinetobacter baumannii strain MRSN7081,ceftazidime,64 +5779,Acinetobacter baumannii strain MRSN7081,ceftazidime,16 +5782,Acinetobacter baumannii strain MRSN7086,ceftazidime,16 +5783,Acinetobacter baumannii strain MRSN7086,ceftazidime,64 +5789,Acinetobacter baumannii strain MRSN7108,ceftazidime,16 +5790,Acinetobacter baumannii strain MRSN7108,ceftazidime,64 +5801,Acinetobacter baumannii strain MRSN7128,ceftazidime,64 +5802,Acinetobacter baumannii strain MRSN7128,ceftazidime,16 +5808,Acinetobacter baumannii strain MRSN7134,ceftazidime,64 +5809,Acinetobacter baumannii strain MRSN7134,ceftazidime,16 +5823,Acinetobacter baumannii strain MRSN7155,ceftazidime,16 +5824,Acinetobacter baumannii strain MRSN7155,ceftazidime,64 +5831,Acinetobacter baumannii strain MRSN7161,ceftazidime,16 +5832,Acinetobacter baumannii strain MRSN7161,ceftazidime,16 +5844,Acinetobacter baumannii strain MRSN7173,ceftazidime,16 +5845,Acinetobacter baumannii strain MRSN7173,ceftazidime,16 +5850,Acinetobacter baumannii strain MRSN7184,ceftazidime,16 +5851,Acinetobacter baumannii strain MRSN7184,ceftazidime,64 +5857,Acinetobacter baumannii strain MRSN7204,ceftazidime,4 +5866,Acinetobacter baumannii strain MRSN7220,ceftazidime,16 +5867,Acinetobacter baumannii strain MRSN7220,ceftazidime,64 +5870,Acinetobacter baumannii strain MRSN7222,ceftazidime,16 +5871,Acinetobacter baumannii strain MRSN7222,ceftazidime,64 +5873,Acinetobacter baumannii strain MRSN7223,ceftazidime,8 +5874,Acinetobacter baumannii strain MRSN7223,ceftazidime,8 +5880,Acinetobacter baumannii strain MRSN7232,ceftazidime,16 +5881,Acinetobacter baumannii strain MRSN7232,ceftazidime,16 +5883,Acinetobacter baumannii strain MRSN7234,ceftazidime,16 +5884,Acinetobacter baumannii strain MRSN7234,ceftazidime,64 +5886,Acinetobacter baumannii strain MRSN7235,ceftazidime,64 +5887,Acinetobacter baumannii strain MRSN7235,ceftazidime,16 +5889,Acinetobacter baumannii strain MRSN7236,ceftazidime,16 +5890,Acinetobacter baumannii strain MRSN7236,ceftazidime,16 +5893,Acinetobacter baumannii strain MRSN7238,ceftazidime,16 +5894,Acinetobacter baumannii strain MRSN7238,ceftazidime,64 +5922,Acinetobacter baumannii strain MRSN7279,ceftazidime,16 +5923,Acinetobacter baumannii strain MRSN7279,ceftazidime,64 +5926,Acinetobacter baumannii strain MRSN7281,ceftazidime,64 +5927,Acinetobacter baumannii strain MRSN7281,ceftazidime,16 +5930,Acinetobacter baumannii strain MRSN7284,ceftazidime,64 +5931,Acinetobacter baumannii strain MRSN7284,ceftazidime,16 +5944,Acinetobacter baumannii strain MRSN7310,ceftazidime,16 +5945,Acinetobacter baumannii strain MRSN7310,ceftazidime,64 +5962,Acinetobacter baumannii strain MRSN7344,ceftazidime,64 +5963,Acinetobacter baumannii strain MRSN7344,ceftazidime,16 +5965,Acinetobacter baumannii strain MRSN7345,ceftazidime,4 +5966,Acinetobacter baumannii strain MRSN7345,ceftazidime,4 +5969,Acinetobacter baumannii strain MRSN7347,ceftazidime,4 +5970,Acinetobacter baumannii strain MRSN7347,ceftazidime,8 +5973,Acinetobacter baumannii strain MRSN7349,ceftazidime,16 +5974,Acinetobacter baumannii strain MRSN7349,ceftazidime,16 +5983,Acinetobacter baumannii strain MRSN7365,ceftazidime,16 +5984,Acinetobacter baumannii strain MRSN7365,ceftazidime,64 +5996,Acinetobacter baumannii strain MRSN7391,ceftazidime,8 +6002,Acinetobacter baumannii strain MRSN7401,ceftazidime,4 +6005,Acinetobacter baumannii strain MRSN7404,ceftazidime,8 +6007,Acinetobacter baumannii strain MRSN7405,ceftazidime,16 +6008,Acinetobacter baumannii strain MRSN7405,ceftazidime,16 +6016,Acinetobacter baumannii strain MRSN7417,ceftazidime,64 +6017,Acinetobacter baumannii strain MRSN7417,ceftazidime,16 +6027,Acinetobacter baumannii strain MRSN7441,ceftazidime,16 +6028,Acinetobacter baumannii strain MRSN7441,ceftazidime,16 +6031,Acinetobacter baumannii strain MRSN7447,ceftazidime,16 +6032,Acinetobacter baumannii strain MRSN7447,ceftazidime,16 +6034,Acinetobacter baumannii strain MRSN7448,ceftazidime,16 +6035,Acinetobacter baumannii strain MRSN7448,ceftazidime,16 +6037,Acinetobacter baumannii strain MRSN7454,ceftazidime,8 +6042,Acinetobacter baumannii strain MRSN7460,ceftazidime,4 +6043,Acinetobacter baumannii strain MRSN7460,ceftazidime,4 +6047,Acinetobacter baumannii strain MRSN7468,ceftazidime,16 +6048,Acinetobacter baumannii strain MRSN7468,ceftazidime,64 +6050,Acinetobacter baumannii strain MRSN7469,ceftazidime,64 +6051,Acinetobacter baumannii strain MRSN7469,ceftazidime,16 +6056,Acinetobacter baumannii strain MRSN7474,ceftazidime,4 +6057,Acinetobacter baumannii strain MRSN7474,ceftazidime,8 +6060,Acinetobacter baumannii strain MRSN7478,ceftazidime,64 +6061,Acinetobacter baumannii strain MRSN7478,ceftazidime,16 +6075,Acinetobacter baumannii strain MRSN7497,ceftazidime,16 +6076,Acinetobacter baumannii strain MRSN7497,ceftazidime,16 +6078,Acinetobacter baumannii strain MRSN7498,ceftazidime,8 +6094,Acinetobacter baumannii strain MRSN7521,ceftazidime,16 +6095,Acinetobacter baumannii strain MRSN7521,ceftazidime,64 +6113,Acinetobacter baumannii strain MRSN7557,ceftazidime,4 +6116,Acinetobacter baumannii strain MRSN7560,ceftazidime,8 +6125,Acinetobacter baumannii strain MRSN7570,ceftazidime,16 +6126,Acinetobacter baumannii strain MRSN7570,ceftazidime,64 +6131,Acinetobacter baumannii strain MRSN7578,ceftazidime,8 +6144,Acinetobacter baumannii strain MRSN7599,ceftazidime,8 +6156,Acinetobacter baumannii strain MRSN7629,ceftazidime,64 +6157,Acinetobacter baumannii strain MRSN7629,ceftazidime,16 +6160,Acinetobacter baumannii strain MRSN7636,ceftazidime,8 +6173,Acinetobacter baumannii strain MRSN7655,ceftazidime,8 +6174,Acinetobacter baumannii strain MRSN7655,ceftazidime,2 +6181,Acinetobacter baumannii strain MRSN7668,ceftazidime,16 +6182,Acinetobacter baumannii strain MRSN7668,ceftazidime,16 +6191,Acinetobacter baumannii strain MRSN7677,ceftazidime,8 +6209,Acinetobacter baumannii strain MRSN7707,ceftazidime,16 +6210,Acinetobacter baumannii strain MRSN7707,ceftazidime,16 +6220,Acinetobacter baumannii strain MRSN7718,ceftazidime,64 +6221,Acinetobacter baumannii strain MRSN7718,ceftazidime,16 +6229,Acinetobacter baumannii strain MRSN7730,ceftazidime,64 +6230,Acinetobacter baumannii strain MRSN7730,ceftazidime,16 +6247,Acinetobacter baumannii strain MRSN7776,ceftazidime,16 +6248,Acinetobacter baumannii strain MRSN7776,ceftazidime,16 +6254,Acinetobacter baumannii strain MRSN7790,ceftazidime,16 +6255,Acinetobacter baumannii strain MRSN7790,ceftazidime,64 +6273,Acinetobacter baumannii strain MRSN7822,ceftazidime,16 +6281,Acinetobacter baumannii strain MRSN83,ceftazidime,16 +6282,Acinetobacter baumannii strain MRSN83,ceftazidime,64 +6284,Acinetobacter baumannii strain MRSN85,ceftazidime,16 +6285,Acinetobacter baumannii strain MRSN85,ceftazidime,16 +6291,Acinetobacter baumannii strain MRSN888,ceftazidime,64 +6294,Acinetobacter baumannii strain MRSN8899,ceftazidime,16 +6295,Acinetobacter baumannii strain MRSN8899,ceftazidime,64 +6297,Acinetobacter baumannii strain MRSN89,ceftazidime,16 +6298,Acinetobacter baumannii strain MRSN89,ceftazidime,64 +6300,Acinetobacter baumannii strain MRSN890,ceftazidime,16 +6302,Acinetobacter baumannii strain MRSN8900,ceftazidime,16 +6303,Acinetobacter baumannii strain MRSN8900,ceftazidime,16 +6305,Acinetobacter baumannii strain MRSN8901,ceftazidime,64 +6306,Acinetobacter baumannii strain MRSN8901,ceftazidime,16 +6308,Acinetobacter baumannii strain MRSN8902,ceftazidime,16 +6309,Acinetobacter baumannii strain MRSN8902,ceftazidime,64 +6311,Acinetobacter baumannii strain MRSN8903,ceftazidime,64 +6312,Acinetobacter baumannii strain MRSN8903,ceftazidime,16 +6316,Acinetobacter baumannii strain MRSN899,ceftazidime,64 +6319,Acinetobacter baumannii strain MRSN908,ceftazidime,16 +6320,Acinetobacter baumannii strain MRSN908,ceftazidime,64 +6322,Acinetobacter baumannii strain MRSN909,ceftazidime,16 +6324,Acinetobacter baumannii strain MRSN910,ceftazidime,16 +6326,Acinetobacter baumannii strain MRSN915,ceftazidime,16 +6328,Acinetobacter baumannii strain MRSN916,ceftazidime,64 +6330,Acinetobacter baumannii strain MRSN917,ceftazidime,16 +6332,Acinetobacter baumannii strain MRSN919,ceftazidime,64 +6334,Acinetobacter baumannii strain MRSN920,ceftazidime,64 +6336,Acinetobacter baumannii strain MRSN921,ceftazidime,16 +6339,Acinetobacter baumannii strain MRSN926,ceftazidime,16 +6341,Acinetobacter baumannii strain MRSN927,ceftazidime,16 +6343,Acinetobacter baumannii strain MRSN929,ceftazidime,64 +6345,Acinetobacter baumannii strain MRSN939,ceftazidime,64 +6347,Acinetobacter baumannii strain MRSN946,ceftazidime,16 +6349,Acinetobacter baumannii strain MRSN953,ceftazidime,16 +6351,Acinetobacter baumannii strain MRSN966,ceftazidime,16 +6410,Acinetobacter baumannii strain MRSN10371,ceftriaxone,64 +6411,Acinetobacter baumannii strain MRSN10371,ceftriaxone,32 +6414,Acinetobacter baumannii strain MRSN11653,ceftriaxone,32 +6415,Acinetobacter baumannii strain MRSN11653,ceftriaxone,64 +6417,Acinetobacter baumannii strain MRSN11659,ceftriaxone,32 +6418,Acinetobacter baumannii strain MRSN11659,ceftriaxone,64 +6420,Acinetobacter baumannii strain MRSN11660,ceftriaxone,32 +6421,Acinetobacter baumannii strain MRSN11660,ceftriaxone,32 +6423,Acinetobacter baumannii strain MRSN11674,ceftriaxone,32 +6424,Acinetobacter baumannii strain MRSN11674,ceftriaxone,32 +6426,Acinetobacter baumannii strain MRSN11675,ceftriaxone,32 +6427,Acinetobacter baumannii strain MRSN11675,ceftriaxone,32 +6429,Acinetobacter baumannii strain MRSN11679,ceftriaxone,64 +6430,Acinetobacter baumannii strain MRSN11679,ceftriaxone,32 +6435,Acinetobacter baumannii strain MRSN11688,ceftriaxone,32 +6436,Acinetobacter baumannii strain MRSN11688,ceftriaxone,32 +6442,Acinetobacter baumannii strain MRSN11701,ceftriaxone,32 +6443,Acinetobacter baumannii strain MRSN11701,ceftriaxone,32 +6445,Acinetobacter baumannii strain MRSN11705,ceftriaxone,64 +6446,Acinetobacter baumannii strain MRSN11705,ceftriaxone,32 +6448,Acinetobacter baumannii strain MRSN11706,ceftriaxone,32 +6449,Acinetobacter baumannii strain MRSN11706,ceftriaxone,64 +6452,Acinetobacter baumannii strain MRSN11708,ceftriaxone,32 +6453,Acinetobacter baumannii strain MRSN11708,ceftriaxone,64 +6456,Acinetobacter baumannii strain MRSN11710,ceftriaxone,64 +6457,Acinetobacter baumannii strain MRSN11710,ceftriaxone,32 +6460,Acinetobacter baumannii strain MRSN11713,ceftriaxone,32 +6461,Acinetobacter baumannii strain MRSN11713,ceftriaxone,64 +6468,Acinetobacter baumannii strain MRSN11723,ceftriaxone,32 +6469,Acinetobacter baumannii strain MRSN11723,ceftriaxone,32 +6474,Acinetobacter baumannii strain MRSN11729,ceftriaxone,32 +6475,Acinetobacter baumannii strain MRSN11729,ceftriaxone,32 +6481,Acinetobacter baumannii strain MRSN11739,ceftriaxone,32 +6482,Acinetobacter baumannii strain MRSN11739,ceftriaxone,64 +6484,Acinetobacter baumannii strain MRSN11742,ceftriaxone,32 +6485,Acinetobacter baumannii strain MRSN11742,ceftriaxone,64 +6488,Acinetobacter baumannii strain MRSN11745,ceftriaxone,64 +6489,Acinetobacter baumannii strain MRSN11745,ceftriaxone,32 +6491,Acinetobacter baumannii strain MRSN11746,ceftriaxone,64 +6492,Acinetobacter baumannii strain MRSN11746,ceftriaxone,32 +6494,Acinetobacter baumannii strain MRSN11747,ceftriaxone,32 +6495,Acinetobacter baumannii strain MRSN11747,ceftriaxone,64 +6498,Acinetobacter baumannii strain MRSN11749,ceftriaxone,32 +6499,Acinetobacter baumannii strain MRSN11749,ceftriaxone,64 +6501,Acinetobacter baumannii strain MRSN11750,ceftriaxone,32 +6502,Acinetobacter baumannii strain MRSN11750,ceftriaxone,32 +6505,Acinetobacter baumannii strain MRSN11753,ceftriaxone,64 +6506,Acinetobacter baumannii strain MRSN11753,ceftriaxone,32 +6510,Acinetobacter baumannii strain MRSN11760,ceftriaxone,64 +6511,Acinetobacter baumannii strain MRSN11760,ceftriaxone,32 +6523,Acinetobacter baumannii strain MRSN11772,ceftriaxone,64 +6524,Acinetobacter baumannii strain MRSN11772,ceftriaxone,32 +6526,Acinetobacter baumannii strain MRSN11774,ceftriaxone,32 +6527,Acinetobacter baumannii strain MRSN11774,ceftriaxone,32 +6533,Acinetobacter baumannii strain MRSN11783,ceftriaxone,32 +6534,Acinetobacter baumannii strain MRSN11783,ceftriaxone,64 +6537,Acinetobacter baumannii strain MRSN11788,ceftriaxone,32 +6538,Acinetobacter baumannii strain MRSN11788,ceftriaxone,32 +6545,Acinetobacter baumannii strain MRSN11797,ceftriaxone,64 +6546,Acinetobacter baumannii strain MRSN11797,ceftriaxone,32 +6548,Acinetobacter baumannii strain MRSN11801,ceftriaxone,64 +6550,Acinetobacter baumannii strain MRSN11803,ceftriaxone,32 +6551,Acinetobacter baumannii strain MRSN11803,ceftriaxone,32 +6553,Acinetobacter baumannii strain MRSN11804,ceftriaxone,32 +6554,Acinetobacter baumannii strain MRSN11804,ceftriaxone,64 +6556,Acinetobacter baumannii strain MRSN11806,ceftriaxone,32 +6557,Acinetobacter baumannii strain MRSN11806,ceftriaxone,32 +6559,Acinetobacter baumannii strain MRSN11807,ceftriaxone,64 +6560,Acinetobacter baumannii strain MRSN11807,ceftriaxone,32 +6562,Acinetobacter baumannii strain MRSN11811,ceftriaxone,32 +6563,Acinetobacter baumannii strain MRSN11811,ceftriaxone,32 +6565,Acinetobacter baumannii strain MRSN11812,ceftriaxone,64 +6566,Acinetobacter baumannii strain MRSN11812,ceftriaxone,32 +6568,Acinetobacter baumannii strain MRSN11813,ceftriaxone,32 +6569,Acinetobacter baumannii strain MRSN11813,ceftriaxone,32 +6573,Acinetobacter baumannii strain MRSN11820,ceftriaxone,32 +6574,Acinetobacter baumannii strain MRSN11820,ceftriaxone,32 +6577,Acinetobacter baumannii strain MRSN11823,ceftriaxone,64 +6578,Acinetobacter baumannii strain MRSN11823,ceftriaxone,32 +6580,Acinetobacter baumannii strain MRSN11825,ceftriaxone,32 +6584,Acinetobacter baumannii strain MRSN1309,ceftriaxone,32 +6586,Acinetobacter baumannii strain MRSN1410,ceftriaxone,32 +6588,Acinetobacter baumannii strain MRSN1420,ceftriaxone,64 +6593,Acinetobacter baumannii strain MRSN1450,ceftriaxone,32 +6595,Acinetobacter baumannii strain MRSN1461,ceftriaxone,64 +6598,Acinetobacter baumannii strain MRSN15038,ceftriaxone,32 +6600,Acinetobacter baumannii strain MRSN15039,ceftriaxone,64 +6601,Acinetobacter baumannii strain MRSN15039,ceftriaxone,32 +6603,Acinetobacter baumannii strain MRSN15042,ceftriaxone,32 +6604,Acinetobacter baumannii strain MRSN15042,ceftriaxone,64 +6609,Acinetobacter baumannii strain MRSN15046,ceftriaxone,8 +6610,Acinetobacter baumannii strain MRSN15046,ceftriaxone,8 +6613,Acinetobacter baumannii strain MRSN15048,ceftriaxone,32 +6614,Acinetobacter baumannii strain MRSN15048,ceftriaxone,32 +6617,Acinetobacter baumannii strain MRSN15065,ceftriaxone,32 +6618,Acinetobacter baumannii strain MRSN15065,ceftriaxone,64 +6620,Acinetobacter baumannii strain MRSN15066,ceftriaxone,64 +6621,Acinetobacter baumannii strain MRSN15066,ceftriaxone,32 +6630,Acinetobacter baumannii strain MRSN15079,ceftriaxone,32 +6631,Acinetobacter baumannii strain MRSN15079,ceftriaxone,32 +6634,Acinetobacter baumannii strain MRSN15081,ceftriaxone,64 +6635,Acinetobacter baumannii strain MRSN15081,ceftriaxone,32 +6638,Acinetobacter baumannii strain MRSN15084,ceftriaxone,32 +6639,Acinetobacter baumannii strain MRSN15084,ceftriaxone,32 +6640,Acinetobacter baumannii strain MRSN15084,ceftriaxone,64 +6642,Acinetobacter baumannii strain MRSN15085,ceftriaxone,64 +6643,Acinetobacter baumannii strain MRSN15085,ceftriaxone,32 +6645,Acinetobacter baumannii strain MRSN15086,ceftriaxone,64 +6646,Acinetobacter baumannii strain MRSN15086,ceftriaxone,32 +6649,Acinetobacter baumannii strain MRSN16874,ceftriaxone,32 +6650,Acinetobacter baumannii strain MRSN16874,ceftriaxone,32 +6652,Acinetobacter baumannii strain MRSN16882,ceftriaxone,8 +6657,Acinetobacter baumannii strain MRSN1738,ceftriaxone,32 +6661,Acinetobacter baumannii strain MRSN1967,ceftriaxone,32 +6665,Acinetobacter baumannii strain MRSN1980,ceftriaxone,32 +6667,Acinetobacter baumannii strain MRSN1987,ceftriaxone,32 +6669,Acinetobacter baumannii strain MRSN1988,ceftriaxone,32 +6671,Acinetobacter baumannii strain MRSN1992,ceftriaxone,32 +6673,Acinetobacter baumannii strain MRSN1998,ceftriaxone,64 +6676,Acinetobacter baumannii strain MRSN2021,ceftriaxone,32 +6678,Acinetobacter baumannii strain MRSN2024,ceftriaxone,64 +6680,Acinetobacter baumannii strain MRSN20315,ceftriaxone,64 +6681,Acinetobacter baumannii strain MRSN20315,ceftriaxone,32 +6683,Acinetobacter baumannii strain MRSN20755,ceftriaxone,32 +6684,Acinetobacter baumannii strain MRSN20755,ceftriaxone,32 +6686,Acinetobacter baumannii strain MRSN2427,ceftriaxone,32 +6687,Acinetobacter baumannii strain MRSN2427,ceftriaxone,64 +6689,Acinetobacter baumannii strain MRSN2441,ceftriaxone,64 +6690,Acinetobacter baumannii strain MRSN2441,ceftriaxone,32 +6692,Acinetobacter baumannii strain MRSN2821,ceftriaxone,8 +6694,Acinetobacter baumannii strain MRSN2830,ceftriaxone,8 +6695,Acinetobacter baumannii strain MRSN2830,ceftriaxone,8 +6697,Acinetobacter baumannii strain MRSN2839,ceftriaxone,64 +6698,Acinetobacter baumannii strain MRSN2839,ceftriaxone,32 +6700,Acinetobacter baumannii strain MRSN2840,ceftriaxone,32 +6701,Acinetobacter baumannii strain MRSN2840,ceftriaxone,64 +6704,Acinetobacter baumannii strain MRSN3547,ceftriaxone,64 +6706,Acinetobacter baumannii strain MRSN3607,ceftriaxone,64 +6708,Acinetobacter baumannii strain MRSN3851,ceftriaxone,32 +6710,Acinetobacter baumannii strain MRSN3941,ceftriaxone,32 +6711,Acinetobacter baumannii strain MRSN3941,ceftriaxone,64 +6713,Acinetobacter baumannii strain MRSN4119,ceftriaxone,32 +6714,Acinetobacter baumannii strain MRSN4119,ceftriaxone,32 +6716,Acinetobacter baumannii strain MRSN4481,ceftriaxone,64 +6718,Acinetobacter baumannii strain MRSN5540,ceftriaxone,32 +6719,Acinetobacter baumannii strain MRSN5540,ceftriaxone,32 +6721,Acinetobacter baumannii strain MRSN6269,ceftriaxone,64 +6722,Acinetobacter baumannii strain MRSN6269,ceftriaxone,32 +6724,Acinetobacter baumannii strain MRSN6273,ceftriaxone,64 +6725,Acinetobacter baumannii strain MRSN6273,ceftriaxone,32 +6730,Acinetobacter baumannii strain MRSN7072,ceftriaxone,64 +6731,Acinetobacter baumannii strain MRSN7072,ceftriaxone,32 +6737,Acinetobacter baumannii strain MRSN7081,ceftriaxone,32 +6738,Acinetobacter baumannii strain MRSN7081,ceftriaxone,64 +6741,Acinetobacter baumannii strain MRSN7086,ceftriaxone,64 +6742,Acinetobacter baumannii strain MRSN7086,ceftriaxone,32 +6749,Acinetobacter baumannii strain MRSN7108,ceftriaxone,64 +6750,Acinetobacter baumannii strain MRSN7108,ceftriaxone,32 +6763,Acinetobacter baumannii strain MRSN7128,ceftriaxone,32 +6764,Acinetobacter baumannii strain MRSN7128,ceftriaxone,64 +6770,Acinetobacter baumannii strain MRSN7134,ceftriaxone,64 +6771,Acinetobacter baumannii strain MRSN7134,ceftriaxone,32 +6781,Acinetobacter baumannii strain MRSN7147,ceftriaxone,32 +6782,Acinetobacter baumannii strain MRSN7147,ceftriaxone,64 +6784,Acinetobacter baumannii strain MRSN7149,ceftriaxone,32 +6785,Acinetobacter baumannii strain MRSN7149,ceftriaxone,64 +6787,Acinetobacter baumannii strain MRSN7154,ceftriaxone,64 +6788,Acinetobacter baumannii strain MRSN7154,ceftriaxone,32 +6790,Acinetobacter baumannii strain MRSN7155,ceftriaxone,64 +6791,Acinetobacter baumannii strain MRSN7155,ceftriaxone,32 +6797,Acinetobacter baumannii strain MRSN7160,ceftriaxone,64 +6798,Acinetobacter baumannii strain MRSN7160,ceftriaxone,32 +6800,Acinetobacter baumannii strain MRSN7161,ceftriaxone,32 +6801,Acinetobacter baumannii strain MRSN7161,ceftriaxone,64 +6810,Acinetobacter baumannii strain MRSN7170,ceftriaxone,64 +6811,Acinetobacter baumannii strain MRSN7170,ceftriaxone,32 +6815,Acinetobacter baumannii strain MRSN7173,ceftriaxone,32 +6816,Acinetobacter baumannii strain MRSN7173,ceftriaxone,64 +6821,Acinetobacter baumannii strain MRSN7184,ceftriaxone,32 +6822,Acinetobacter baumannii strain MRSN7184,ceftriaxone,32 +6835,Acinetobacter baumannii strain MRSN7217,ceftriaxone,64 +6836,Acinetobacter baumannii strain MRSN7217,ceftriaxone,32 +6839,Acinetobacter baumannii strain MRSN7220,ceftriaxone,32 +6840,Acinetobacter baumannii strain MRSN7220,ceftriaxone,64 +6843,Acinetobacter baumannii strain MRSN7222,ceftriaxone,64 +6844,Acinetobacter baumannii strain MRSN7222,ceftriaxone,32 +6853,Acinetobacter baumannii strain MRSN7232,ceftriaxone,64 +6854,Acinetobacter baumannii strain MRSN7232,ceftriaxone,32 +6856,Acinetobacter baumannii strain MRSN7234,ceftriaxone,32 +6857,Acinetobacter baumannii strain MRSN7234,ceftriaxone,32 +6859,Acinetobacter baumannii strain MRSN7235,ceftriaxone,32 +6860,Acinetobacter baumannii strain MRSN7235,ceftriaxone,64 +6862,Acinetobacter baumannii strain MRSN7236,ceftriaxone,32 +6863,Acinetobacter baumannii strain MRSN7236,ceftriaxone,64 +6866,Acinetobacter baumannii strain MRSN7238,ceftriaxone,32 +6867,Acinetobacter baumannii strain MRSN7238,ceftriaxone,64 +6883,Acinetobacter baumannii strain MRSN7257,ceftriaxone,32 +6884,Acinetobacter baumannii strain MRSN7257,ceftriaxone,64 +6894,Acinetobacter baumannii strain MRSN7273,ceftriaxone,32 +6895,Acinetobacter baumannii strain MRSN7273,ceftriaxone,64 +6899,Acinetobacter baumannii strain MRSN7279,ceftriaxone,64 +6900,Acinetobacter baumannii strain MRSN7279,ceftriaxone,32 +6903,Acinetobacter baumannii strain MRSN7281,ceftriaxone,32 +6904,Acinetobacter baumannii strain MRSN7281,ceftriaxone,32 +6907,Acinetobacter baumannii strain MRSN7284,ceftriaxone,64 +6908,Acinetobacter baumannii strain MRSN7284,ceftriaxone,32 +6924,Acinetobacter baumannii strain MRSN7304,ceftriaxone,32 +6925,Acinetobacter baumannii strain MRSN7304,ceftriaxone,64 +6927,Acinetobacter baumannii strain MRSN7305,ceftriaxone,64 +6928,Acinetobacter baumannii strain MRSN7305,ceftriaxone,32 +6930,Acinetobacter baumannii strain MRSN7306,ceftriaxone,64 +6931,Acinetobacter baumannii strain MRSN7306,ceftriaxone,32 +6934,Acinetobacter baumannii strain MRSN7309,ceftriaxone,32 +6935,Acinetobacter baumannii strain MRSN7309,ceftriaxone,64 +6937,Acinetobacter baumannii strain MRSN7310,ceftriaxone,32 +6938,Acinetobacter baumannii strain MRSN7310,ceftriaxone,32 +6941,Acinetobacter baumannii strain MRSN7314,ceftriaxone,64 +6942,Acinetobacter baumannii strain MRSN7314,ceftriaxone,32 +6949,Acinetobacter baumannii strain MRSN7324,ceftriaxone,32 +6950,Acinetobacter baumannii strain MRSN7324,ceftriaxone,32 +6954,Acinetobacter baumannii strain MRSN7328,ceftriaxone,32 +6955,Acinetobacter baumannii strain MRSN7328,ceftriaxone,64 +6957,Acinetobacter baumannii strain MRSN7330,ceftriaxone,64 +6958,Acinetobacter baumannii strain MRSN7330,ceftriaxone,32 +6965,Acinetobacter baumannii strain MRSN7344,ceftriaxone,32 +6966,Acinetobacter baumannii strain MRSN7344,ceftriaxone,32 +6968,Acinetobacter baumannii strain MRSN7345,ceftriaxone,4 +6972,Acinetobacter baumannii strain MRSN7349,ceftriaxone,32 +6973,Acinetobacter baumannii strain MRSN7349,ceftriaxone,32 +6975,Acinetobacter baumannii strain MRSN7350,ceftriaxone,64 +6976,Acinetobacter baumannii strain MRSN7350,ceftriaxone,32 +6980,Acinetobacter baumannii strain MRSN7354,ceftriaxone,32 +6981,Acinetobacter baumannii strain MRSN7354,ceftriaxone,32 +6983,Acinetobacter baumannii strain MRSN7355,ceftriaxone,64 +6984,Acinetobacter baumannii strain MRSN7355,ceftriaxone,32 +6987,Acinetobacter baumannii strain MRSN7357,ceftriaxone,32 +6988,Acinetobacter baumannii strain MRSN7357,ceftriaxone,32 +6990,Acinetobacter baumannii strain MRSN7359,ceftriaxone,64 +6991,Acinetobacter baumannii strain MRSN7359,ceftriaxone,32 +6994,Acinetobacter baumannii strain MRSN7361,ceftriaxone,32 +6995,Acinetobacter baumannii strain MRSN7361,ceftriaxone,64 +6998,Acinetobacter baumannii strain MRSN7363,ceftriaxone,64 +6999,Acinetobacter baumannii strain MRSN7363,ceftriaxone,32 +7002,Acinetobacter baumannii strain MRSN7365,ceftriaxone,64 +7003,Acinetobacter baumannii strain MRSN7365,ceftriaxone,32 +7005,Acinetobacter baumannii strain MRSN7366,ceftriaxone,32 +7006,Acinetobacter baumannii strain MRSN7366,ceftriaxone,64 +7010,Acinetobacter baumannii strain MRSN7370,ceftriaxone,32 +7011,Acinetobacter baumannii strain MRSN7370,ceftriaxone,64 +7013,Acinetobacter baumannii strain MRSN7372,ceftriaxone,32 +7014,Acinetobacter baumannii strain MRSN7372,ceftriaxone,64 +7016,Acinetobacter baumannii strain MRSN7373,ceftriaxone,64 +7017,Acinetobacter baumannii strain MRSN7373,ceftriaxone,32 +7019,Acinetobacter baumannii strain MRSN7375,ceftriaxone,32 +7020,Acinetobacter baumannii strain MRSN7375,ceftriaxone,64 +7023,Acinetobacter baumannii strain MRSN7377,ceftriaxone,32 +7024,Acinetobacter baumannii strain MRSN7377,ceftriaxone,32 +7026,Acinetobacter baumannii strain MRSN7378,ceftriaxone,64 +7027,Acinetobacter baumannii strain MRSN7378,ceftriaxone,32 +7029,Acinetobacter baumannii strain MRSN7379,ceftriaxone,64 +7030,Acinetobacter baumannii strain MRSN7379,ceftriaxone,32 +7032,Acinetobacter baumannii strain MRSN7380,ceftriaxone,64 +7033,Acinetobacter baumannii strain MRSN7380,ceftriaxone,32 +7039,Acinetobacter baumannii strain MRSN7386,ceftriaxone,32 +7040,Acinetobacter baumannii strain MRSN7386,ceftriaxone,32 +7042,Acinetobacter baumannii strain MRSN7387,ceftriaxone,32 +7043,Acinetobacter baumannii strain MRSN7387,ceftriaxone,32 +7045,Acinetobacter baumannii strain MRSN7388,ceftriaxone,64 +7046,Acinetobacter baumannii strain MRSN7388,ceftriaxone,32 +7048,Acinetobacter baumannii strain MRSN7389,ceftriaxone,32 +7049,Acinetobacter baumannii strain MRSN7389,ceftriaxone,32 +7051,Acinetobacter baumannii strain MRSN7390,ceftriaxone,64 +7052,Acinetobacter baumannii strain MRSN7390,ceftriaxone,32 +7054,Acinetobacter baumannii strain MRSN7391,ceftriaxone,32 +7056,Acinetobacter baumannii strain MRSN7392,ceftriaxone,32 +7057,Acinetobacter baumannii strain MRSN7392,ceftriaxone,32 +7060,Acinetobacter baumannii strain MRSN7394,ceftriaxone,32 +7061,Acinetobacter baumannii strain MRSN7394,ceftriaxone,64 +7065,Acinetobacter baumannii strain MRSN7401,ceftriaxone,32 +7066,Acinetobacter baumannii strain MRSN7401,ceftriaxone,64 +7068,Acinetobacter baumannii strain MRSN7402,ceftriaxone,64 +7069,Acinetobacter baumannii strain MRSN7402,ceftriaxone,32 +7071,Acinetobacter baumannii strain MRSN7403,ceftriaxone,64 +7072,Acinetobacter baumannii strain MRSN7403,ceftriaxone,32 +7074,Acinetobacter baumannii strain MRSN7404,ceftriaxone,32 +7076,Acinetobacter baumannii strain MRSN7405,ceftriaxone,64 +7077,Acinetobacter baumannii strain MRSN7405,ceftriaxone,32 +7080,Acinetobacter baumannii strain MRSN7407,ceftriaxone,64 +7081,Acinetobacter baumannii strain MRSN7407,ceftriaxone,32 +7083,Acinetobacter baumannii strain MRSN7408,ceftriaxone,32 +7084,Acinetobacter baumannii strain MRSN7408,ceftriaxone,32 +7086,Acinetobacter baumannii strain MRSN7409,ceftriaxone,64 +7087,Acinetobacter baumannii strain MRSN7409,ceftriaxone,32 +7090,Acinetobacter baumannii strain MRSN7411,ceftriaxone,32 +7091,Acinetobacter baumannii strain MRSN7411,ceftriaxone,64 +7094,Acinetobacter baumannii strain MRSN7413,ceftriaxone,32 +7095,Acinetobacter baumannii strain MRSN7413,ceftriaxone,32 +7097,Acinetobacter baumannii strain MRSN7414,ceftriaxone,32 +7098,Acinetobacter baumannii strain MRSN7414,ceftriaxone,32 +7101,Acinetobacter baumannii strain MRSN7416,ceftriaxone,32 +7102,Acinetobacter baumannii strain MRSN7416,ceftriaxone,32 +7104,Acinetobacter baumannii strain MRSN7417,ceftriaxone,32 +7105,Acinetobacter baumannii strain MRSN7417,ceftriaxone,64 +7107,Acinetobacter baumannii strain MRSN7418,ceftriaxone,32 +7108,Acinetobacter baumannii strain MRSN7418,ceftriaxone,32 +7110,Acinetobacter baumannii strain MRSN7419,ceftriaxone,32 +7111,Acinetobacter baumannii strain MRSN7419,ceftriaxone,32 +7114,Acinetobacter baumannii strain MRSN7421,ceftriaxone,32 +7115,Acinetobacter baumannii strain MRSN7421,ceftriaxone,32 +7117,Acinetobacter baumannii strain MRSN7423,ceftriaxone,32 +7118,Acinetobacter baumannii strain MRSN7423,ceftriaxone,64 +7123,Acinetobacter baumannii strain MRSN7438,ceftriaxone,64 +7124,Acinetobacter baumannii strain MRSN7438,ceftriaxone,32 +7127,Acinetobacter baumannii strain MRSN7441,ceftriaxone,32 +7128,Acinetobacter baumannii strain MRSN7441,ceftriaxone,64 +7131,Acinetobacter baumannii strain MRSN7447,ceftriaxone,64 +7132,Acinetobacter baumannii strain MRSN7447,ceftriaxone,32 +7134,Acinetobacter baumannii strain MRSN7448,ceftriaxone,64 +7135,Acinetobacter baumannii strain MRSN7448,ceftriaxone,32 +7137,Acinetobacter baumannii strain MRSN7454,ceftriaxone,32 +7138,Acinetobacter baumannii strain MRSN7454,ceftriaxone,32 +7140,Acinetobacter baumannii strain MRSN7455,ceftriaxone,32 +7141,Acinetobacter baumannii strain MRSN7455,ceftriaxone,64 +7144,Acinetobacter baumannii strain MRSN7457,ceftriaxone,64 +7145,Acinetobacter baumannii strain MRSN7457,ceftriaxone,32 +7148,Acinetobacter baumannii strain MRSN7459,ceftriaxone,64 +7149,Acinetobacter baumannii strain MRSN7459,ceftriaxone,32 +7151,Acinetobacter baumannii strain MRSN7460,ceftriaxone,8 +7153,Acinetobacter baumannii strain MRSN7461,ceftriaxone,32 +7154,Acinetobacter baumannii strain MRSN7461,ceftriaxone,32 +7156,Acinetobacter baumannii strain MRSN7462,ceftriaxone,32 +7157,Acinetobacter baumannii strain MRSN7462,ceftriaxone,64 +7161,Acinetobacter baumannii strain MRSN7467,ceftriaxone,64 +7162,Acinetobacter baumannii strain MRSN7467,ceftriaxone,32 +7164,Acinetobacter baumannii strain MRSN7468,ceftriaxone,32 +7165,Acinetobacter baumannii strain MRSN7468,ceftriaxone,64 +7167,Acinetobacter baumannii strain MRSN7469,ceftriaxone,32 +7168,Acinetobacter baumannii strain MRSN7469,ceftriaxone,32 +7176,Acinetobacter baumannii strain MRSN7478,ceftriaxone,32 +7177,Acinetobacter baumannii strain MRSN7478,ceftriaxone,64 +7179,Acinetobacter baumannii strain MRSN7481,ceftriaxone,32 +7180,Acinetobacter baumannii strain MRSN7481,ceftriaxone,32 +7184,Acinetobacter baumannii strain MRSN7485,ceftriaxone,64 +7185,Acinetobacter baumannii strain MRSN7485,ceftriaxone,32 +7194,Acinetobacter baumannii strain MRSN7497,ceftriaxone,32 +7195,Acinetobacter baumannii strain MRSN7497,ceftriaxone,64 +7197,Acinetobacter baumannii strain MRSN7498,ceftriaxone,32 +7198,Acinetobacter baumannii strain MRSN7498,ceftriaxone,32 +7215,Acinetobacter baumannii strain MRSN7521,ceftriaxone,64 +7216,Acinetobacter baumannii strain MRSN7521,ceftriaxone,32 +7234,Acinetobacter baumannii strain MRSN7557,ceftriaxone,64 +7237,Acinetobacter baumannii strain MRSN7560,ceftriaxone,32 +7238,Acinetobacter baumannii strain MRSN7560,ceftriaxone,64 +7245,Acinetobacter baumannii strain MRSN7570,ceftriaxone,32 +7246,Acinetobacter baumannii strain MRSN7570,ceftriaxone,64 +7251,Acinetobacter baumannii strain MRSN7578,ceftriaxone,64 +7255,Acinetobacter baumannii strain MRSN7582,ceftriaxone,32 +7256,Acinetobacter baumannii strain MRSN7582,ceftriaxone,64 +7266,Acinetobacter baumannii strain MRSN7599,ceftriaxone,32 +7267,Acinetobacter baumannii strain MRSN7599,ceftriaxone,32 +7271,Acinetobacter baumannii strain MRSN7605,ceftriaxone,32 +7277,Acinetobacter baumannii strain MRSN7617,ceftriaxone,32 +7278,Acinetobacter baumannii strain MRSN7617,ceftriaxone,64 +7285,Acinetobacter baumannii strain MRSN7629,ceftriaxone,32 +7286,Acinetobacter baumannii strain MRSN7629,ceftriaxone,32 +7289,Acinetobacter baumannii strain MRSN7636,ceftriaxone,64 +7292,Acinetobacter baumannii strain MRSN7640,ceftriaxone,64 +7293,Acinetobacter baumannii strain MRSN7640,ceftriaxone,32 +7307,Acinetobacter baumannii strain MRSN7660,ceftriaxone,32 +7308,Acinetobacter baumannii strain MRSN7660,ceftriaxone,32 +7312,Acinetobacter baumannii strain MRSN7668,ceftriaxone,32 +7313,Acinetobacter baumannii strain MRSN7668,ceftriaxone,32 +7316,Acinetobacter baumannii strain MRSN7670,ceftriaxone,64 +7317,Acinetobacter baumannii strain MRSN7670,ceftriaxone,32 +7325,Acinetobacter baumannii strain MRSN7677,ceftriaxone,32 +7326,Acinetobacter baumannii strain MRSN7677,ceftriaxone,64 +7343,Acinetobacter baumannii strain MRSN7706,ceftriaxone,32 +7344,Acinetobacter baumannii strain MRSN7706,ceftriaxone,64 +7346,Acinetobacter baumannii strain MRSN7707,ceftriaxone,64 +7347,Acinetobacter baumannii strain MRSN7707,ceftriaxone,32 +7357,Acinetobacter baumannii strain MRSN7718,ceftriaxone,64 +7358,Acinetobacter baumannii strain MRSN7718,ceftriaxone,32 +7366,Acinetobacter baumannii strain MRSN7730,ceftriaxone,64 +7367,Acinetobacter baumannii strain MRSN7730,ceftriaxone,32 +7374,Acinetobacter baumannii strain MRSN7751,ceftriaxone,32 +7375,Acinetobacter baumannii strain MRSN7751,ceftriaxone,32 +7386,Acinetobacter baumannii strain MRSN7776,ceftriaxone,32 +7387,Acinetobacter baumannii strain MRSN7776,ceftriaxone,64 +7393,Acinetobacter baumannii strain MRSN7790,ceftriaxone,32 +7394,Acinetobacter baumannii strain MRSN7790,ceftriaxone,64 +7407,Acinetobacter baumannii strain MRSN7815,ceftriaxone,32 +7408,Acinetobacter baumannii strain MRSN7815,ceftriaxone,64 +7415,Acinetobacter baumannii strain MRSN7822,ceftriaxone,32 +7416,Acinetobacter baumannii strain MRSN7822,ceftriaxone,32 +7423,Acinetobacter baumannii strain MRSN7834,ceftriaxone,64 +7425,Acinetobacter baumannii strain MRSN83,ceftriaxone,32 +7426,Acinetobacter baumannii strain MRSN83,ceftriaxone,64 +7428,Acinetobacter baumannii strain MRSN85,ceftriaxone,32 +7429,Acinetobacter baumannii strain MRSN85,ceftriaxone,64 +7432,Acinetobacter baumannii strain MRSN870,ceftriaxone,32 +7436,Acinetobacter baumannii strain MRSN888,ceftriaxone,64 +7439,Acinetobacter baumannii strain MRSN8899,ceftriaxone,32 +7440,Acinetobacter baumannii strain MRSN8899,ceftriaxone,64 +7442,Acinetobacter baumannii strain MRSN89,ceftriaxone,64 +7443,Acinetobacter baumannii strain MRSN89,ceftriaxone,32 +7445,Acinetobacter baumannii strain MRSN890,ceftriaxone,32 +7447,Acinetobacter baumannii strain MRSN8900,ceftriaxone,32 +7448,Acinetobacter baumannii strain MRSN8900,ceftriaxone,64 +7450,Acinetobacter baumannii strain MRSN8901,ceftriaxone,32 +7451,Acinetobacter baumannii strain MRSN8901,ceftriaxone,64 +7453,Acinetobacter baumannii strain MRSN8902,ceftriaxone,32 +7454,Acinetobacter baumannii strain MRSN8902,ceftriaxone,64 +7456,Acinetobacter baumannii strain MRSN8903,ceftriaxone,32 +7457,Acinetobacter baumannii strain MRSN8903,ceftriaxone,32 +7461,Acinetobacter baumannii strain MRSN899,ceftriaxone,32 +7464,Acinetobacter baumannii strain MRSN908,ceftriaxone,32 +7465,Acinetobacter baumannii strain MRSN908,ceftriaxone,64 +7467,Acinetobacter baumannii strain MRSN909,ceftriaxone,32 +7469,Acinetobacter baumannii strain MRSN910,ceftriaxone,64 +7471,Acinetobacter baumannii strain MRSN915,ceftriaxone,64 +7473,Acinetobacter baumannii strain MRSN916,ceftriaxone,64 +7475,Acinetobacter baumannii strain MRSN917,ceftriaxone,64 +7477,Acinetobacter baumannii strain MRSN919,ceftriaxone,32 +7479,Acinetobacter baumannii strain MRSN920,ceftriaxone,64 +7481,Acinetobacter baumannii strain MRSN921,ceftriaxone,32 +7483,Acinetobacter baumannii strain MRSN922,ceftriaxone,32 +7485,Acinetobacter baumannii strain MRSN926,ceftriaxone,32 +7487,Acinetobacter baumannii strain MRSN927,ceftriaxone,32 +7489,Acinetobacter baumannii strain MRSN929,ceftriaxone,32 +7491,Acinetobacter baumannii strain MRSN939,ceftriaxone,64 +7493,Acinetobacter baumannii strain MRSN946,ceftriaxone,64 +7495,Acinetobacter baumannii strain MRSN953,ceftriaxone,32 +7497,Acinetobacter baumannii strain MRSN966,ceftriaxone,64 +7584,Acinetobacter baumannii strain MRSN10371,ciprofloxacin,2 +7587,Acinetobacter baumannii strain MRSN11653,ciprofloxacin,2 +7589,Acinetobacter baumannii strain MRSN11659,ciprofloxacin,2 +7591,Acinetobacter baumannii strain MRSN11660,ciprofloxacin,2 +7593,Acinetobacter baumannii strain MRSN11669,ciprofloxacin,2 +7595,Acinetobacter baumannii strain MRSN11674,ciprofloxacin,2 +7597,Acinetobacter baumannii strain MRSN11675,ciprofloxacin,2 +7599,Acinetobacter baumannii strain MRSN11679,ciprofloxacin,2 +7605,Acinetobacter baumannii strain MRSN11688,ciprofloxacin,2 +7611,Acinetobacter baumannii strain MRSN11701,ciprofloxacin,2 +7613,Acinetobacter baumannii strain MRSN11705,ciprofloxacin,2 +7615,Acinetobacter baumannii strain MRSN11706,ciprofloxacin,2 +7618,Acinetobacter baumannii strain MRSN11708,ciprofloxacin,2 +7621,Acinetobacter baumannii strain MRSN11710,ciprofloxacin,2 +7624,Acinetobacter baumannii strain MRSN11713,ciprofloxacin,2 +7631,Acinetobacter baumannii strain MRSN11723,ciprofloxacin,2 +7640,Acinetobacter baumannii strain MRSN11739,ciprofloxacin,2 +7642,Acinetobacter baumannii strain MRSN11742,ciprofloxacin,2 +7645,Acinetobacter baumannii strain MRSN11745,ciprofloxacin,2 +7647,Acinetobacter baumannii strain MRSN11746,ciprofloxacin,2 +7649,Acinetobacter baumannii strain MRSN11747,ciprofloxacin,2 +7650,Acinetobacter baumannii strain MRSN11747,ciprofloxacin,2 +7653,Acinetobacter baumannii strain MRSN11749,ciprofloxacin,2 +7655,Acinetobacter baumannii strain MRSN11750,ciprofloxacin,2 +7658,Acinetobacter baumannii strain MRSN11753,ciprofloxacin,2 +7661,Acinetobacter baumannii strain MRSN11760,ciprofloxacin,2 +7673,Acinetobacter baumannii strain MRSN11772,ciprofloxacin,2 +7675,Acinetobacter baumannii strain MRSN11774,ciprofloxacin,2 +7682,Acinetobacter baumannii strain MRSN11783,ciprofloxacin,2 +7683,Acinetobacter baumannii strain MRSN11783,ciprofloxacin,2 +7686,Acinetobacter baumannii strain MRSN11788,ciprofloxacin,2 +7687,Acinetobacter baumannii strain MRSN11788,ciprofloxacin,2 +7694,Acinetobacter baumannii strain MRSN11797,ciprofloxacin,2 +7695,Acinetobacter baumannii strain MRSN11797,ciprofloxacin,2 +7697,Acinetobacter baumannii strain MRSN11801,ciprofloxacin,2 +7699,Acinetobacter baumannii strain MRSN11803,ciprofloxacin,2 +7700,Acinetobacter baumannii strain MRSN11803,ciprofloxacin,2 +7702,Acinetobacter baumannii strain MRSN11804,ciprofloxacin,4 +7703,Acinetobacter baumannii strain MRSN11804,ciprofloxacin,2 +7705,Acinetobacter baumannii strain MRSN11806,ciprofloxacin,4 +7706,Acinetobacter baumannii strain MRSN11806,ciprofloxacin,2 +7708,Acinetobacter baumannii strain MRSN11807,ciprofloxacin,2 +7709,Acinetobacter baumannii strain MRSN11807,ciprofloxacin,2 +7711,Acinetobacter baumannii strain MRSN11811,ciprofloxacin,2 +7712,Acinetobacter baumannii strain MRSN11811,ciprofloxacin,2 +7714,Acinetobacter baumannii strain MRSN11812,ciprofloxacin,4 +7715,Acinetobacter baumannii strain MRSN11812,ciprofloxacin,2 +7717,Acinetobacter baumannii strain MRSN11813,ciprofloxacin,4 +7718,Acinetobacter baumannii strain MRSN11813,ciprofloxacin,2 +7720,Acinetobacter baumannii strain MRSN11815,ciprofloxacin,1 +7721,Acinetobacter baumannii strain MRSN11815,ciprofloxacin,0.25 +7723,Acinetobacter baumannii strain MRSN11816,ciprofloxacin,1 +7724,Acinetobacter baumannii strain MRSN11816,ciprofloxacin,0.5 +7726,Acinetobacter baumannii strain MRSN11820,ciprofloxacin,2 +7727,Acinetobacter baumannii strain MRSN11820,ciprofloxacin,2 +7729,Acinetobacter baumannii strain MRSN11821,ciprofloxacin,0.5 +7730,Acinetobacter baumannii strain MRSN11821,ciprofloxacin,1 +7732,Acinetobacter baumannii strain MRSN11822,ciprofloxacin,1 +7733,Acinetobacter baumannii strain MRSN11822,ciprofloxacin,0.5 +7735,Acinetobacter baumannii strain MRSN11823,ciprofloxacin,4 +7736,Acinetobacter baumannii strain MRSN11823,ciprofloxacin,2 +7738,Acinetobacter baumannii strain MRSN11825,ciprofloxacin,2 +7739,Acinetobacter baumannii strain MRSN11825,ciprofloxacin,4 +7743,Acinetobacter baumannii strain MRSN1309,ciprofloxacin,2 +7745,Acinetobacter baumannii strain MRSN1339,ciprofloxacin,0.25 +7746,Acinetobacter baumannii strain MRSN1339,ciprofloxacin,0.5 +7748,Acinetobacter baumannii strain MRSN1410,ciprofloxacin,2 +7750,Acinetobacter baumannii strain MRSN1420,ciprofloxacin,2 +7752,Acinetobacter baumannii strain MRSN1428,ciprofloxacin,0.25 +7755,Acinetobacter baumannii strain MRSN1449,ciprofloxacin,0.25 +7757,Acinetobacter baumannii strain MRSN1450,ciprofloxacin,2 +7759,Acinetobacter baumannii strain MRSN1461,ciprofloxacin,4 +7762,Acinetobacter baumannii strain MRSN15038,ciprofloxacin,1 +7764,Acinetobacter baumannii strain MRSN15039,ciprofloxacin,2 +7765,Acinetobacter baumannii strain MRSN15039,ciprofloxacin,2 +7767,Acinetobacter baumannii strain MRSN15042,ciprofloxacin,1 +7771,Acinetobacter baumannii strain MRSN15045,ciprofloxacin,1 +7772,Acinetobacter baumannii strain MRSN15045,ciprofloxacin,0.25 +7774,Acinetobacter baumannii strain MRSN15046,ciprofloxacin,2 +7775,Acinetobacter baumannii strain MRSN15046,ciprofloxacin,4 +7778,Acinetobacter baumannii strain MRSN15048,ciprofloxacin,2 +7779,Acinetobacter baumannii strain MRSN15048,ciprofloxacin,2 +7782,Acinetobacter baumannii strain MRSN15065,ciprofloxacin,2 +7783,Acinetobacter baumannii strain MRSN15065,ciprofloxacin,2 +7785,Acinetobacter baumannii strain MRSN15066,ciprofloxacin,2 +7786,Acinetobacter baumannii strain MRSN15066,ciprofloxacin,4 +7790,Acinetobacter baumannii strain MRSN15070,ciprofloxacin,0.25 +7791,Acinetobacter baumannii strain MRSN15070,ciprofloxacin,0.5 +7799,Acinetobacter baumannii strain MRSN15079,ciprofloxacin,2 +7800,Acinetobacter baumannii strain MRSN15079,ciprofloxacin,2 +7803,Acinetobacter baumannii strain MRSN15081,ciprofloxacin,4 +7804,Acinetobacter baumannii strain MRSN15081,ciprofloxacin,2 +7808,Acinetobacter baumannii strain MRSN15084,ciprofloxacin,4 +7809,Acinetobacter baumannii strain MRSN15084,ciprofloxacin,2 +7810,Acinetobacter baumannii strain MRSN15084,ciprofloxacin,2 +7812,Acinetobacter baumannii strain MRSN15085,ciprofloxacin,2 +7813,Acinetobacter baumannii strain MRSN15085,ciprofloxacin,4 +7815,Acinetobacter baumannii strain MRSN15086,ciprofloxacin,0.5 +7819,Acinetobacter baumannii strain MRSN1598,ciprofloxacin,0.5 +7821,Acinetobacter baumannii strain MRSN16874,ciprofloxacin,4 +7822,Acinetobacter baumannii strain MRSN16874,ciprofloxacin,2 +7824,Acinetobacter baumannii strain MRSN16881,ciprofloxacin,4 +7825,Acinetobacter baumannii strain MRSN16881,ciprofloxacin,2 +7827,Acinetobacter baumannii strain MRSN16882,ciprofloxacin,2 +7828,Acinetobacter baumannii strain MRSN16882,ciprofloxacin,2 +7830,Acinetobacter baumannii strain MRSN16896,ciprofloxacin,4 +7831,Acinetobacter baumannii strain MRSN16896,ciprofloxacin,2 +7833,Acinetobacter baumannii strain MRSN16897,ciprofloxacin,2 +7834,Acinetobacter baumannii strain MRSN16897,ciprofloxacin,2 +7836,Acinetobacter baumannii strain MRSN16898,ciprofloxacin,4 +7837,Acinetobacter baumannii strain MRSN16898,ciprofloxacin,2 +7839,Acinetobacter baumannii strain MRSN16901,ciprofloxacin,2 +7840,Acinetobacter baumannii strain MRSN16901,ciprofloxacin,4 +7842,Acinetobacter baumannii strain MRSN1738,ciprofloxacin,4 +7844,Acinetobacter baumannii strain MRSN17592,ciprofloxacin,4 +7846,Acinetobacter baumannii strain MRSN17593,ciprofloxacin,2 +7847,Acinetobacter baumannii strain MRSN17593,ciprofloxacin,4 +7849,Acinetobacter baumannii strain MRSN1967,ciprofloxacin,4 +7853,Acinetobacter baumannii strain MRSN1980,ciprofloxacin,4 +7855,Acinetobacter baumannii strain MRSN1987,ciprofloxacin,4 +7857,Acinetobacter baumannii strain MRSN1988,ciprofloxacin,4 +7859,Acinetobacter baumannii strain MRSN1992,ciprofloxacin,4 +7861,Acinetobacter baumannii strain MRSN1998,ciprofloxacin,4 +7863,Acinetobacter baumannii strain MRSN2009,ciprofloxacin,0.5 +7865,Acinetobacter baumannii strain MRSN2021,ciprofloxacin,4 +7867,Acinetobacter baumannii strain MRSN2024,ciprofloxacin,4 +7869,Acinetobacter baumannii strain MRSN20315,ciprofloxacin,4 +7870,Acinetobacter baumannii strain MRSN20315,ciprofloxacin,2 +7872,Acinetobacter baumannii strain MRSN20755,ciprofloxacin,1 +7873,Acinetobacter baumannii strain MRSN20755,ciprofloxacin,1 +7875,Acinetobacter baumannii strain MRSN2427,ciprofloxacin,4 +7876,Acinetobacter baumannii strain MRSN2427,ciprofloxacin,2 +7878,Acinetobacter baumannii strain MRSN2441,ciprofloxacin,2 +7879,Acinetobacter baumannii strain MRSN2441,ciprofloxacin,2 +7881,Acinetobacter baumannii strain MRSN2821,ciprofloxacin,0.5 +7882,Acinetobacter baumannii strain MRSN2821,ciprofloxacin,1 +7884,Acinetobacter baumannii strain MRSN2830,ciprofloxacin,0.25 +7885,Acinetobacter baumannii strain MRSN2830,ciprofloxacin,0.5 +7887,Acinetobacter baumannii strain MRSN2839,ciprofloxacin,4 +7888,Acinetobacter baumannii strain MRSN2839,ciprofloxacin,2 +7890,Acinetobacter baumannii strain MRSN2840,ciprofloxacin,2 +7891,Acinetobacter baumannii strain MRSN2840,ciprofloxacin,2 +7893,Acinetobacter baumannii strain MRSN3360,ciprofloxacin,4 +7895,Acinetobacter baumannii strain MRSN3547,ciprofloxacin,4 +7897,Acinetobacter baumannii strain MRSN3607,ciprofloxacin,4 +7899,Acinetobacter baumannii strain MRSN3843,ciprofloxacin,0.5 +7901,Acinetobacter baumannii strain MRSN3851,ciprofloxacin,2 +7903,Acinetobacter baumannii strain MRSN3941,ciprofloxacin,2 +7904,Acinetobacter baumannii strain MRSN3941,ciprofloxacin,2 +7906,Acinetobacter baumannii strain MRSN4119,ciprofloxacin,4 +7907,Acinetobacter baumannii strain MRSN4119,ciprofloxacin,2 +7909,Acinetobacter baumannii strain MRSN4481,ciprofloxacin,4 +7911,Acinetobacter baumannii strain MRSN5540,ciprofloxacin,4 +7912,Acinetobacter baumannii strain MRSN5540,ciprofloxacin,2 +7914,Acinetobacter baumannii strain MRSN6269,ciprofloxacin,2 +7915,Acinetobacter baumannii strain MRSN6269,ciprofloxacin,2 +7917,Acinetobacter baumannii strain MRSN6273,ciprofloxacin,2 +7918,Acinetobacter baumannii strain MRSN6273,ciprofloxacin,2 +7921,Acinetobacter baumannii strain MRSN7069,ciprofloxacin,2 +7922,Acinetobacter baumannii strain MRSN7069,ciprofloxacin,2 +7925,Acinetobacter baumannii strain MRSN7072,ciprofloxacin,4 +7926,Acinetobacter baumannii strain MRSN7072,ciprofloxacin,2 +7932,Acinetobacter baumannii strain MRSN7081,ciprofloxacin,0.5 +7933,Acinetobacter baumannii strain MRSN7081,ciprofloxacin,0.5 +7936,Acinetobacter baumannii strain MRSN7086,ciprofloxacin,2 +7937,Acinetobacter baumannii strain MRSN7086,ciprofloxacin,2 +7945,Acinetobacter baumannii strain MRSN7108,ciprofloxacin,4 +7946,Acinetobacter baumannii strain MRSN7108,ciprofloxacin,2 +7959,Acinetobacter baumannii strain MRSN7128,ciprofloxacin,4 +7960,Acinetobacter baumannii strain MRSN7128,ciprofloxacin,2 +7966,Acinetobacter baumannii strain MRSN7134,ciprofloxacin,4 +7967,Acinetobacter baumannii strain MRSN7134,ciprofloxacin,2 +7976,Acinetobacter baumannii strain MRSN7147,ciprofloxacin,4 +7977,Acinetobacter baumannii strain MRSN7147,ciprofloxacin,2 +7980,Acinetobacter baumannii strain MRSN7149,ciprofloxacin,2 +7981,Acinetobacter baumannii strain MRSN7149,ciprofloxacin,2 +7985,Acinetobacter baumannii strain MRSN7154,ciprofloxacin,4 +7986,Acinetobacter baumannii strain MRSN7154,ciprofloxacin,2 +7988,Acinetobacter baumannii strain MRSN7155,ciprofloxacin,2 +7989,Acinetobacter baumannii strain MRSN7155,ciprofloxacin,4 +7995,Acinetobacter baumannii strain MRSN7160,ciprofloxacin,2 +7996,Acinetobacter baumannii strain MRSN7160,ciprofloxacin,2 +7998,Acinetobacter baumannii strain MRSN7161,ciprofloxacin,2 +7999,Acinetobacter baumannii strain MRSN7161,ciprofloxacin,2 +8008,Acinetobacter baumannii strain MRSN7170,ciprofloxacin,2 +8009,Acinetobacter baumannii strain MRSN7170,ciprofloxacin,4 +8013,Acinetobacter baumannii strain MRSN7173,ciprofloxacin,2 +8014,Acinetobacter baumannii strain MRSN7173,ciprofloxacin,2 +8019,Acinetobacter baumannii strain MRSN7184,ciprofloxacin,0.25 +8020,Acinetobacter baumannii strain MRSN7184,ciprofloxacin,1 +8026,Acinetobacter baumannii strain MRSN7204,ciprofloxacin,1 +8027,Acinetobacter baumannii strain MRSN7204,ciprofloxacin,1 +8036,Acinetobacter baumannii strain MRSN7217,ciprofloxacin,1 +8037,Acinetobacter baumannii strain MRSN7217,ciprofloxacin,1 +8040,Acinetobacter baumannii strain MRSN7220,ciprofloxacin,4 +8041,Acinetobacter baumannii strain MRSN7220,ciprofloxacin,2 +8044,Acinetobacter baumannii strain MRSN7222,ciprofloxacin,4 +8045,Acinetobacter baumannii strain MRSN7222,ciprofloxacin,2 +8047,Acinetobacter baumannii strain MRSN7223,ciprofloxacin,1 +8055,Acinetobacter baumannii strain MRSN7232,ciprofloxacin,2 +8056,Acinetobacter baumannii strain MRSN7232,ciprofloxacin,4 +8058,Acinetobacter baumannii strain MRSN7234,ciprofloxacin,2 +8059,Acinetobacter baumannii strain MRSN7234,ciprofloxacin,2 +8061,Acinetobacter baumannii strain MRSN7235,ciprofloxacin,2 +8062,Acinetobacter baumannii strain MRSN7235,ciprofloxacin,4 +8064,Acinetobacter baumannii strain MRSN7236,ciprofloxacin,4 +8065,Acinetobacter baumannii strain MRSN7236,ciprofloxacin,2 +8068,Acinetobacter baumannii strain MRSN7238,ciprofloxacin,2 +8069,Acinetobacter baumannii strain MRSN7238,ciprofloxacin,4 +8085,Acinetobacter baumannii strain MRSN7257,ciprofloxacin,2 +8086,Acinetobacter baumannii strain MRSN7257,ciprofloxacin,2 +8097,Acinetobacter baumannii strain MRSN7273,ciprofloxacin,2 +8098,Acinetobacter baumannii strain MRSN7273,ciprofloxacin,4 +8103,Acinetobacter baumannii strain MRSN7279,ciprofloxacin,2 +8104,Acinetobacter baumannii strain MRSN7279,ciprofloxacin,4 +8107,Acinetobacter baumannii strain MRSN7281,ciprofloxacin,2 +8108,Acinetobacter baumannii strain MRSN7281,ciprofloxacin,4 +8111,Acinetobacter baumannii strain MRSN7284,ciprofloxacin,2 +8112,Acinetobacter baumannii strain MRSN7284,ciprofloxacin,2 +8128,Acinetobacter baumannii strain MRSN7304,ciprofloxacin,2 +8129,Acinetobacter baumannii strain MRSN7304,ciprofloxacin,4 +8131,Acinetobacter baumannii strain MRSN7305,ciprofloxacin,4 +8132,Acinetobacter baumannii strain MRSN7305,ciprofloxacin,2 +8134,Acinetobacter baumannii strain MRSN7306,ciprofloxacin,2 +8135,Acinetobacter baumannii strain MRSN7306,ciprofloxacin,4 +8138,Acinetobacter baumannii strain MRSN7309,ciprofloxacin,2 +8139,Acinetobacter baumannii strain MRSN7309,ciprofloxacin,2 +8141,Acinetobacter baumannii strain MRSN7310,ciprofloxacin,4 +8142,Acinetobacter baumannii strain MRSN7310,ciprofloxacin,2 +8145,Acinetobacter baumannii strain MRSN7314,ciprofloxacin,2 +8146,Acinetobacter baumannii strain MRSN7314,ciprofloxacin,4 +8153,Acinetobacter baumannii strain MRSN7324,ciprofloxacin,2 +8154,Acinetobacter baumannii strain MRSN7324,ciprofloxacin,4 +8159,Acinetobacter baumannii strain MRSN7328,ciprofloxacin,2 +8160,Acinetobacter baumannii strain MRSN7328,ciprofloxacin,4 +8162,Acinetobacter baumannii strain MRSN7330,ciprofloxacin,2 +8163,Acinetobacter baumannii strain MRSN7330,ciprofloxacin,2 +8170,Acinetobacter baumannii strain MRSN7344,ciprofloxacin,2 +8171,Acinetobacter baumannii strain MRSN7344,ciprofloxacin,4 +8173,Acinetobacter baumannii strain MRSN7345,ciprofloxacin,0.25 +8174,Acinetobacter baumannii strain MRSN7345,ciprofloxacin,1 +8177,Acinetobacter baumannii strain MRSN7347,ciprofloxacin,1 +8178,Acinetobacter baumannii strain MRSN7347,ciprofloxacin,0.25 +8181,Acinetobacter baumannii strain MRSN7349,ciprofloxacin,2 +8182,Acinetobacter baumannii strain MRSN7349,ciprofloxacin,4 +8184,Acinetobacter baumannii strain MRSN7350,ciprofloxacin,4 +8185,Acinetobacter baumannii strain MRSN7350,ciprofloxacin,2 +8190,Acinetobacter baumannii strain MRSN7354,ciprofloxacin,2 +8191,Acinetobacter baumannii strain MRSN7354,ciprofloxacin,4 +8193,Acinetobacter baumannii strain MRSN7355,ciprofloxacin,2 +8194,Acinetobacter baumannii strain MRSN7355,ciprofloxacin,4 +8197,Acinetobacter baumannii strain MRSN7357,ciprofloxacin,2 +8198,Acinetobacter baumannii strain MRSN7357,ciprofloxacin,4 +8200,Acinetobacter baumannii strain MRSN7359,ciprofloxacin,2 +8201,Acinetobacter baumannii strain MRSN7359,ciprofloxacin,2 +8204,Acinetobacter baumannii strain MRSN7361,ciprofloxacin,4 +8205,Acinetobacter baumannii strain MRSN7361,ciprofloxacin,2 +8208,Acinetobacter baumannii strain MRSN7363,ciprofloxacin,2 +8209,Acinetobacter baumannii strain MRSN7363,ciprofloxacin,4 +8212,Acinetobacter baumannii strain MRSN7365,ciprofloxacin,2 +8213,Acinetobacter baumannii strain MRSN7365,ciprofloxacin,2 +8215,Acinetobacter baumannii strain MRSN7366,ciprofloxacin,2 +8216,Acinetobacter baumannii strain MRSN7366,ciprofloxacin,2 +8220,Acinetobacter baumannii strain MRSN7370,ciprofloxacin,2 +8221,Acinetobacter baumannii strain MRSN7370,ciprofloxacin,2 +8223,Acinetobacter baumannii strain MRSN7372,ciprofloxacin,4 +8224,Acinetobacter baumannii strain MRSN7372,ciprofloxacin,2 +8226,Acinetobacter baumannii strain MRSN7373,ciprofloxacin,2 +8227,Acinetobacter baumannii strain MRSN7373,ciprofloxacin,2 +8229,Acinetobacter baumannii strain MRSN7375,ciprofloxacin,2 +8230,Acinetobacter baumannii strain MRSN7375,ciprofloxacin,2 +8233,Acinetobacter baumannii strain MRSN7377,ciprofloxacin,2 +8234,Acinetobacter baumannii strain MRSN7377,ciprofloxacin,2 +8236,Acinetobacter baumannii strain MRSN7378,ciprofloxacin,2 +8237,Acinetobacter baumannii strain MRSN7378,ciprofloxacin,4 +8239,Acinetobacter baumannii strain MRSN7379,ciprofloxacin,2 +8240,Acinetobacter baumannii strain MRSN7379,ciprofloxacin,2 +8242,Acinetobacter baumannii strain MRSN7380,ciprofloxacin,2 +8243,Acinetobacter baumannii strain MRSN7380,ciprofloxacin,4 +8249,Acinetobacter baumannii strain MRSN7386,ciprofloxacin,4 +8250,Acinetobacter baumannii strain MRSN7386,ciprofloxacin,2 +8252,Acinetobacter baumannii strain MRSN7387,ciprofloxacin,4 +8253,Acinetobacter baumannii strain MRSN7387,ciprofloxacin,2 +8255,Acinetobacter baumannii strain MRSN7388,ciprofloxacin,2 +8256,Acinetobacter baumannii strain MRSN7388,ciprofloxacin,4 +8258,Acinetobacter baumannii strain MRSN7389,ciprofloxacin,2 +8259,Acinetobacter baumannii strain MRSN7389,ciprofloxacin,4 +8261,Acinetobacter baumannii strain MRSN7390,ciprofloxacin,2 +8262,Acinetobacter baumannii strain MRSN7390,ciprofloxacin,2 +8264,Acinetobacter baumannii strain MRSN7391,ciprofloxacin,2 +8265,Acinetobacter baumannii strain MRSN7391,ciprofloxacin,4 +8267,Acinetobacter baumannii strain MRSN7392,ciprofloxacin,4 +8268,Acinetobacter baumannii strain MRSN7392,ciprofloxacin,2 +8271,Acinetobacter baumannii strain MRSN7394,ciprofloxacin,4 +8272,Acinetobacter baumannii strain MRSN7394,ciprofloxacin,2 +8276,Acinetobacter baumannii strain MRSN7401,ciprofloxacin,2 +8277,Acinetobacter baumannii strain MRSN7401,ciprofloxacin,4 +8279,Acinetobacter baumannii strain MRSN7402,ciprofloxacin,2 +8280,Acinetobacter baumannii strain MRSN7402,ciprofloxacin,2 +8282,Acinetobacter baumannii strain MRSN7403,ciprofloxacin,2 +8283,Acinetobacter baumannii strain MRSN7403,ciprofloxacin,2 +8285,Acinetobacter baumannii strain MRSN7404,ciprofloxacin,2 +8286,Acinetobacter baumannii strain MRSN7404,ciprofloxacin,2 +8288,Acinetobacter baumannii strain MRSN7405,ciprofloxacin,2 +8289,Acinetobacter baumannii strain MRSN7405,ciprofloxacin,4 +8292,Acinetobacter baumannii strain MRSN7407,ciprofloxacin,2 +8293,Acinetobacter baumannii strain MRSN7407,ciprofloxacin,2 +8295,Acinetobacter baumannii strain MRSN7408,ciprofloxacin,2 +8296,Acinetobacter baumannii strain MRSN7408,ciprofloxacin,2 +8298,Acinetobacter baumannii strain MRSN7409,ciprofloxacin,2 +8299,Acinetobacter baumannii strain MRSN7409,ciprofloxacin,2 +8302,Acinetobacter baumannii strain MRSN7411,ciprofloxacin,2 +8303,Acinetobacter baumannii strain MRSN7411,ciprofloxacin,4 +8306,Acinetobacter baumannii strain MRSN7413,ciprofloxacin,4 +8307,Acinetobacter baumannii strain MRSN7413,ciprofloxacin,2 +8309,Acinetobacter baumannii strain MRSN7414,ciprofloxacin,4 +8310,Acinetobacter baumannii strain MRSN7414,ciprofloxacin,2 +8313,Acinetobacter baumannii strain MRSN7416,ciprofloxacin,2 +8314,Acinetobacter baumannii strain MRSN7416,ciprofloxacin,4 +8316,Acinetobacter baumannii strain MRSN7417,ciprofloxacin,2 +8317,Acinetobacter baumannii strain MRSN7417,ciprofloxacin,4 +8319,Acinetobacter baumannii strain MRSN7418,ciprofloxacin,2 +8320,Acinetobacter baumannii strain MRSN7418,ciprofloxacin,4 +8322,Acinetobacter baumannii strain MRSN7419,ciprofloxacin,2 +8323,Acinetobacter baumannii strain MRSN7419,ciprofloxacin,4 +8326,Acinetobacter baumannii strain MRSN7421,ciprofloxacin,2 +8327,Acinetobacter baumannii strain MRSN7421,ciprofloxacin,2 +8329,Acinetobacter baumannii strain MRSN7423,ciprofloxacin,4 +8330,Acinetobacter baumannii strain MRSN7423,ciprofloxacin,2 +8336,Acinetobacter baumannii strain MRSN7438,ciprofloxacin,2 +8337,Acinetobacter baumannii strain MRSN7438,ciprofloxacin,4 +8340,Acinetobacter baumannii strain MRSN7441,ciprofloxacin,2 +8341,Acinetobacter baumannii strain MRSN7441,ciprofloxacin,2 +8344,Acinetobacter baumannii strain MRSN7447,ciprofloxacin,4 +8345,Acinetobacter baumannii strain MRSN7447,ciprofloxacin,2 +8347,Acinetobacter baumannii strain MRSN7448,ciprofloxacin,4 +8348,Acinetobacter baumannii strain MRSN7448,ciprofloxacin,2 +8350,Acinetobacter baumannii strain MRSN7454,ciprofloxacin,2 +8351,Acinetobacter baumannii strain MRSN7454,ciprofloxacin,4 +8353,Acinetobacter baumannii strain MRSN7455,ciprofloxacin,2 +8354,Acinetobacter baumannii strain MRSN7455,ciprofloxacin,2 +8357,Acinetobacter baumannii strain MRSN7457,ciprofloxacin,2 +8358,Acinetobacter baumannii strain MRSN7457,ciprofloxacin,4 +8361,Acinetobacter baumannii strain MRSN7459,ciprofloxacin,2 +8362,Acinetobacter baumannii strain MRSN7459,ciprofloxacin,4 +8364,Acinetobacter baumannii strain MRSN7460,ciprofloxacin,0.25 +8365,Acinetobacter baumannii strain MRSN7460,ciprofloxacin,1 +8367,Acinetobacter baumannii strain MRSN7461,ciprofloxacin,2 +8368,Acinetobacter baumannii strain MRSN7461,ciprofloxacin,4 +8370,Acinetobacter baumannii strain MRSN7462,ciprofloxacin,2 +8371,Acinetobacter baumannii strain MRSN7462,ciprofloxacin,2 +8375,Acinetobacter baumannii strain MRSN7467,ciprofloxacin,4 +8376,Acinetobacter baumannii strain MRSN7467,ciprofloxacin,2 +8378,Acinetobacter baumannii strain MRSN7468,ciprofloxacin,2 +8379,Acinetobacter baumannii strain MRSN7468,ciprofloxacin,2 +8381,Acinetobacter baumannii strain MRSN7469,ciprofloxacin,2 +8386,Acinetobacter baumannii strain MRSN7474,ciprofloxacin,2 +8387,Acinetobacter baumannii strain MRSN7474,ciprofloxacin,2 +8389,Acinetobacter baumannii strain MRSN7475,ciprofloxacin,2 +8390,Acinetobacter baumannii strain MRSN7475,ciprofloxacin,2 +8393,Acinetobacter baumannii strain MRSN7478,ciprofloxacin,4 +8394,Acinetobacter baumannii strain MRSN7478,ciprofloxacin,2 +8397,Acinetobacter baumannii strain MRSN7481,ciprofloxacin,2 +8398,Acinetobacter baumannii strain MRSN7481,ciprofloxacin,2 +8403,Acinetobacter baumannii strain MRSN7485,ciprofloxacin,2 +8404,Acinetobacter baumannii strain MRSN7485,ciprofloxacin,4 +8413,Acinetobacter baumannii strain MRSN7497,ciprofloxacin,2 +8414,Acinetobacter baumannii strain MRSN7497,ciprofloxacin,4 +8416,Acinetobacter baumannii strain MRSN7498,ciprofloxacin,2 +8417,Acinetobacter baumannii strain MRSN7498,ciprofloxacin,4 +8434,Acinetobacter baumannii strain MRSN7521,ciprofloxacin,4 +8435,Acinetobacter baumannii strain MRSN7521,ciprofloxacin,2 +8453,Acinetobacter baumannii strain MRSN7557,ciprofloxacin,4 +8454,Acinetobacter baumannii strain MRSN7557,ciprofloxacin,2 +8457,Acinetobacter baumannii strain MRSN7560,ciprofloxacin,2 +8458,Acinetobacter baumannii strain MRSN7560,ciprofloxacin,4 +8467,Acinetobacter baumannii strain MRSN7570,ciprofloxacin,2 +8468,Acinetobacter baumannii strain MRSN7570,ciprofloxacin,2 +8473,Acinetobacter baumannii strain MRSN7578,ciprofloxacin,2 +8474,Acinetobacter baumannii strain MRSN7578,ciprofloxacin,2 +8478,Acinetobacter baumannii strain MRSN7582,ciprofloxacin,2 +8479,Acinetobacter baumannii strain MRSN7582,ciprofloxacin,2 +8489,Acinetobacter baumannii strain MRSN7599,ciprofloxacin,2 +8490,Acinetobacter baumannii strain MRSN7599,ciprofloxacin,4 +8494,Acinetobacter baumannii strain MRSN7605,ciprofloxacin,2 +8500,Acinetobacter baumannii strain MRSN7617,ciprofloxacin,4 +8501,Acinetobacter baumannii strain MRSN7617,ciprofloxacin,2 +8508,Acinetobacter baumannii strain MRSN7629,ciprofloxacin,2 +8509,Acinetobacter baumannii strain MRSN7629,ciprofloxacin,4 +8512,Acinetobacter baumannii strain MRSN7636,ciprofloxacin,2 +8513,Acinetobacter baumannii strain MRSN7636,ciprofloxacin,2 +8517,Acinetobacter baumannii strain MRSN7640,ciprofloxacin,2 +8518,Acinetobacter baumannii strain MRSN7640,ciprofloxacin,2 +8529,Acinetobacter baumannii strain MRSN7655,ciprofloxacin,1 +8530,Acinetobacter baumannii strain MRSN7655,ciprofloxacin,0.25 +8535,Acinetobacter baumannii strain MRSN7660,ciprofloxacin,2 +8536,Acinetobacter baumannii strain MRSN7660,ciprofloxacin,2 +8540,Acinetobacter baumannii strain MRSN7668,ciprofloxacin,2 +8541,Acinetobacter baumannii strain MRSN7668,ciprofloxacin,2 +8544,Acinetobacter baumannii strain MRSN7670,ciprofloxacin,4 +8545,Acinetobacter baumannii strain MRSN7670,ciprofloxacin,2 +8553,Acinetobacter baumannii strain MRSN7677,ciprofloxacin,4 +8554,Acinetobacter baumannii strain MRSN7677,ciprofloxacin,2 +8570,Acinetobacter baumannii strain MRSN7706,ciprofloxacin,2 +8571,Acinetobacter baumannii strain MRSN7706,ciprofloxacin,4 +8573,Acinetobacter baumannii strain MRSN7707,ciprofloxacin,4 +8574,Acinetobacter baumannii strain MRSN7707,ciprofloxacin,2 +8584,Acinetobacter baumannii strain MRSN7718,ciprofloxacin,2 +8585,Acinetobacter baumannii strain MRSN7718,ciprofloxacin,4 +8593,Acinetobacter baumannii strain MRSN7730,ciprofloxacin,2 +8601,Acinetobacter baumannii strain MRSN7751,ciprofloxacin,2 +8612,Acinetobacter baumannii strain MRSN7776,ciprofloxacin,2 +8619,Acinetobacter baumannii strain MRSN7790,ciprofloxacin,2 +8632,Acinetobacter baumannii strain MRSN7815,ciprofloxacin,2 +8639,Acinetobacter baumannii strain MRSN7822,ciprofloxacin,2 +8640,Acinetobacter baumannii strain MRSN7822,ciprofloxacin,2 +8647,Acinetobacter baumannii strain MRSN7834,ciprofloxacin,2 +8648,Acinetobacter baumannii strain MRSN7834,ciprofloxacin,4 +8650,Acinetobacter baumannii strain MRSN83,ciprofloxacin,4 +8651,Acinetobacter baumannii strain MRSN83,ciprofloxacin,2 +8653,Acinetobacter baumannii strain MRSN85,ciprofloxacin,2 +8654,Acinetobacter baumannii strain MRSN85,ciprofloxacin,2 +8657,Acinetobacter baumannii strain MRSN870,ciprofloxacin,4 +8661,Acinetobacter baumannii strain MRSN888,ciprofloxacin,4 +8664,Acinetobacter baumannii strain MRSN8899,ciprofloxacin,2 +8666,Acinetobacter baumannii strain MRSN89,ciprofloxacin,2 +8667,Acinetobacter baumannii strain MRSN89,ciprofloxacin,2 +8669,Acinetobacter baumannii strain MRSN890,ciprofloxacin,2 +8671,Acinetobacter baumannii strain MRSN8900,ciprofloxacin,2 +8673,Acinetobacter baumannii strain MRSN8901,ciprofloxacin,2 +8675,Acinetobacter baumannii strain MRSN8902,ciprofloxacin,2 +8677,Acinetobacter baumannii strain MRSN8903,ciprofloxacin,2 +8681,Acinetobacter baumannii strain MRSN899,ciprofloxacin,2 +8684,Acinetobacter baumannii strain MRSN908,ciprofloxacin,2 +8685,Acinetobacter baumannii strain MRSN908,ciprofloxacin,2 +8687,Acinetobacter baumannii strain MRSN909,ciprofloxacin,4 +8689,Acinetobacter baumannii strain MRSN910,ciprofloxacin,4 +8691,Acinetobacter baumannii strain MRSN915,ciprofloxacin,2 +8693,Acinetobacter baumannii strain MRSN916,ciprofloxacin,2 +8695,Acinetobacter baumannii strain MRSN917,ciprofloxacin,4 +8697,Acinetobacter baumannii strain MRSN919,ciprofloxacin,2 +8699,Acinetobacter baumannii strain MRSN920,ciprofloxacin,2 +8701,Acinetobacter baumannii strain MRSN921,ciprofloxacin,4 +8703,Acinetobacter baumannii strain MRSN922,ciprofloxacin,2 +8705,Acinetobacter baumannii strain MRSN926,ciprofloxacin,2 +8707,Acinetobacter baumannii strain MRSN927,ciprofloxacin,4 +8709,Acinetobacter baumannii strain MRSN929,ciprofloxacin,4 +8711,Acinetobacter baumannii strain MRSN939,ciprofloxacin,2 +8713,Acinetobacter baumannii strain MRSN946,ciprofloxacin,4 +8715,Acinetobacter baumannii strain MRSN953,ciprofloxacin,4 +8717,Acinetobacter baumannii strain MRSN966,ciprofloxacin,2 +9041,Acinetobacter baumannii strain MRSN11659,gentamicin,16 +9042,Acinetobacter baumannii strain MRSN11659,gentamicin,8 +9044,Acinetobacter baumannii strain MRSN11660,gentamicin,16 +9045,Acinetobacter baumannii strain MRSN11660,gentamicin,8 +9047,Acinetobacter baumannii strain MRSN11669,gentamicin,4 +9048,Acinetobacter baumannii strain MRSN11669,gentamicin,4 +9050,Acinetobacter baumannii strain MRSN11674,gentamicin,8 +9051,Acinetobacter baumannii strain MRSN11674,gentamicin,8 +9053,Acinetobacter baumannii strain MRSN11675,gentamicin,16 +9054,Acinetobacter baumannii strain MRSN11675,gentamicin,8 +9056,Acinetobacter baumannii strain MRSN11679,gentamicin,8 +9057,Acinetobacter baumannii strain MRSN11679,gentamicin,8 +9063,Acinetobacter baumannii strain MRSN11688,gentamicin,8 +9064,Acinetobacter baumannii strain MRSN11688,gentamicin,16 +9070,Acinetobacter baumannii strain MRSN11701,gentamicin,16 +9071,Acinetobacter baumannii strain MRSN11701,gentamicin,8 +9073,Acinetobacter baumannii strain MRSN11705,gentamicin,8 +9074,Acinetobacter baumannii strain MRSN11705,gentamicin,16 +9076,Acinetobacter baumannii strain MRSN11706,gentamicin,8 +9077,Acinetobacter baumannii strain MRSN11706,gentamicin,16 +9080,Acinetobacter baumannii strain MRSN11708,gentamicin,8 +9081,Acinetobacter baumannii strain MRSN11708,gentamicin,16 +9084,Acinetobacter baumannii strain MRSN11710,gentamicin,16 +9085,Acinetobacter baumannii strain MRSN11710,gentamicin,8 +9088,Acinetobacter baumannii strain MRSN11713,gentamicin,8 +9089,Acinetobacter baumannii strain MRSN11713,gentamicin,8 +9095,Acinetobacter baumannii strain MRSN11723,gentamicin,8 +9096,Acinetobacter baumannii strain MRSN11723,gentamicin,16 +9101,Acinetobacter baumannii strain MRSN11729,gentamicin,8 +9102,Acinetobacter baumannii strain MRSN11729,gentamicin,16 +9108,Acinetobacter baumannii strain MRSN11739,gentamicin,16 +9109,Acinetobacter baumannii strain MRSN11739,gentamicin,8 +9111,Acinetobacter baumannii strain MRSN11742,gentamicin,16 +9112,Acinetobacter baumannii strain MRSN11742,gentamicin,8 +9115,Acinetobacter baumannii strain MRSN11745,gentamicin,8 +9116,Acinetobacter baumannii strain MRSN11745,gentamicin,16 +9118,Acinetobacter baumannii strain MRSN11746,gentamicin,8 +9119,Acinetobacter baumannii strain MRSN11746,gentamicin,8 +9121,Acinetobacter baumannii strain MRSN11747,gentamicin,16 +9122,Acinetobacter baumannii strain MRSN11747,gentamicin,8 +9125,Acinetobacter baumannii strain MRSN11749,gentamicin,8 +9127,Acinetobacter baumannii strain MRSN11750,gentamicin,8 +9130,Acinetobacter baumannii strain MRSN11753,gentamicin,8 +9134,Acinetobacter baumannii strain MRSN11760,gentamicin,16 +9135,Acinetobacter baumannii strain MRSN11760,gentamicin,8 +9141,Acinetobacter baumannii strain MRSN11765,gentamicin,4 +9142,Acinetobacter baumannii strain MRSN11765,gentamicin,1 +9149,Acinetobacter baumannii strain MRSN11772,gentamicin,16 +9150,Acinetobacter baumannii strain MRSN11772,gentamicin,8 +9152,Acinetobacter baumannii strain MRSN11774,gentamicin,8 +9159,Acinetobacter baumannii strain MRSN11783,gentamicin,16 +9160,Acinetobacter baumannii strain MRSN11783,gentamicin,8 +9163,Acinetobacter baumannii strain MRSN11788,gentamicin,16 +9164,Acinetobacter baumannii strain MRSN11788,gentamicin,8 +9171,Acinetobacter baumannii strain MRSN11797,gentamicin,8 +9172,Acinetobacter baumannii strain MRSN11797,gentamicin,8 +9174,Acinetobacter baumannii strain MRSN11801,gentamicin,8 +9176,Acinetobacter baumannii strain MRSN11803,gentamicin,8 +9177,Acinetobacter baumannii strain MRSN11803,gentamicin,8 +9179,Acinetobacter baumannii strain MRSN11804,gentamicin,16 +9180,Acinetobacter baumannii strain MRSN11804,gentamicin,8 +9182,Acinetobacter baumannii strain MRSN11806,gentamicin,8 +9183,Acinetobacter baumannii strain MRSN11806,gentamicin,8 +9185,Acinetobacter baumannii strain MRSN11807,gentamicin,16 +9186,Acinetobacter baumannii strain MRSN11807,gentamicin,8 +9188,Acinetobacter baumannii strain MRSN11811,gentamicin,8 +9189,Acinetobacter baumannii strain MRSN11811,gentamicin,8 +9191,Acinetobacter baumannii strain MRSN11812,gentamicin,16 +9192,Acinetobacter baumannii strain MRSN11812,gentamicin,8 +9194,Acinetobacter baumannii strain MRSN11813,gentamicin,16 +9195,Acinetobacter baumannii strain MRSN11813,gentamicin,8 +9197,Acinetobacter baumannii strain MRSN11815,gentamicin,4 +9198,Acinetobacter baumannii strain MRSN11815,gentamicin,1 +9200,Acinetobacter baumannii strain MRSN11816,gentamicin,4 +9201,Acinetobacter baumannii strain MRSN11816,gentamicin,1 +9203,Acinetobacter baumannii strain MRSN11819,gentamicin,4 +9204,Acinetobacter baumannii strain MRSN11819,gentamicin,1 +9206,Acinetobacter baumannii strain MRSN11820,gentamicin,16 +9207,Acinetobacter baumannii strain MRSN11820,gentamicin,8 +9209,Acinetobacter baumannii strain MRSN11821,gentamicin,4 +9211,Acinetobacter baumannii strain MRSN11822,gentamicin,2 +9212,Acinetobacter baumannii strain MRSN11822,gentamicin,1 +9214,Acinetobacter baumannii strain MRSN11823,gentamicin,8 +9215,Acinetobacter baumannii strain MRSN11823,gentamicin,16 +9218,Acinetobacter baumannii strain MRSN11826,gentamicin,1 +9219,Acinetobacter baumannii strain MRSN11826,gentamicin,4 +9222,Acinetobacter baumannii strain MRSN1309,gentamicin,8 +9224,Acinetobacter baumannii strain MRSN1339,gentamicin,2 +9225,Acinetobacter baumannii strain MRSN1339,gentamicin,4 +9227,Acinetobacter baumannii strain MRSN1410,gentamicin,16 +9229,Acinetobacter baumannii strain MRSN1420,gentamicin,8 +9231,Acinetobacter baumannii strain MRSN1428,gentamicin,1 +9233,Acinetobacter baumannii strain MRSN1439,gentamicin,1 +9235,Acinetobacter baumannii strain MRSN1449,gentamicin,1 +9237,Acinetobacter baumannii strain MRSN1450,gentamicin,16 +9239,Acinetobacter baumannii strain MRSN1461,gentamicin,8 +9242,Acinetobacter baumannii strain MRSN15038,gentamicin,8 +9244,Acinetobacter baumannii strain MRSN15039,gentamicin,8 +9245,Acinetobacter baumannii strain MRSN15039,gentamicin,16 +9247,Acinetobacter baumannii strain MRSN15042,gentamicin,8 +9251,Acinetobacter baumannii strain MRSN15045,gentamicin,4 +9252,Acinetobacter baumannii strain MRSN15045,gentamicin,1 +9256,Acinetobacter baumannii strain MRSN15048,gentamicin,8 +9257,Acinetobacter baumannii strain MRSN15048,gentamicin,8 +9260,Acinetobacter baumannii strain MRSN15065,gentamicin,8 +9261,Acinetobacter baumannii strain MRSN15065,gentamicin,8 +9263,Acinetobacter baumannii strain MRSN15066,gentamicin,16 +9264,Acinetobacter baumannii strain MRSN15066,gentamicin,8 +9274,Acinetobacter baumannii strain MRSN15079,gentamicin,8 +9275,Acinetobacter baumannii strain MRSN15079,gentamicin,8 +9278,Acinetobacter baumannii strain MRSN15081,gentamicin,8 +9279,Acinetobacter baumannii strain MRSN15081,gentamicin,8 +9283,Acinetobacter baumannii strain MRSN15084,gentamicin,8 +9284,Acinetobacter baumannii strain MRSN15084,gentamicin,8 +9285,Acinetobacter baumannii strain MRSN15084,gentamicin,8 +9287,Acinetobacter baumannii strain MRSN15085,gentamicin,8 +9288,Acinetobacter baumannii strain MRSN15085,gentamicin,16 +9290,Acinetobacter baumannii strain MRSN15086,gentamicin,8 +9291,Acinetobacter baumannii strain MRSN15086,gentamicin,8 +9295,Acinetobacter baumannii strain MRSN1551,gentamicin,1 +9297,Acinetobacter baumannii strain MRSN1598,gentamicin,1 +9299,Acinetobacter baumannii strain MRSN16874,gentamicin,16 +9300,Acinetobacter baumannii strain MRSN16874,gentamicin,8 +9302,Acinetobacter baumannii strain MRSN16881,gentamicin,8 +9303,Acinetobacter baumannii strain MRSN16881,gentamicin,8 +9305,Acinetobacter baumannii strain MRSN16882,gentamicin,8 +9306,Acinetobacter baumannii strain MRSN16882,gentamicin,8 +9308,Acinetobacter baumannii strain MRSN16896,gentamicin,8 +9310,Acinetobacter baumannii strain MRSN16897,gentamicin,8 +9312,Acinetobacter baumannii strain MRSN16898,gentamicin,8 +9314,Acinetobacter baumannii strain MRSN16901,gentamicin,8 +9315,Acinetobacter baumannii strain MRSN16901,gentamicin,16 +9317,Acinetobacter baumannii strain MRSN1738,gentamicin,16 +9319,Acinetobacter baumannii strain MRSN17593,gentamicin,8 +9321,Acinetobacter baumannii strain MRSN1967,gentamicin,16 +9326,Acinetobacter baumannii strain MRSN1987,gentamicin,16 +9328,Acinetobacter baumannii strain MRSN1988,gentamicin,8 +9330,Acinetobacter baumannii strain MRSN1992,gentamicin,8 +9332,Acinetobacter baumannii strain MRSN1998,gentamicin,8 +9334,Acinetobacter baumannii strain MRSN2009,gentamicin,1 +9336,Acinetobacter baumannii strain MRSN2021,gentamicin,16 +9338,Acinetobacter baumannii strain MRSN2024,gentamicin,16 +9340,Acinetobacter baumannii strain MRSN20315,gentamicin,16 +9341,Acinetobacter baumannii strain MRSN20315,gentamicin,8 +9343,Acinetobacter baumannii strain MRSN20755,gentamicin,8 +9344,Acinetobacter baumannii strain MRSN20755,gentamicin,16 +9346,Acinetobacter baumannii strain MRSN2821,gentamicin,1 +9347,Acinetobacter baumannii strain MRSN2821,gentamicin,2 +9349,Acinetobacter baumannii strain MRSN2830,gentamicin,1 +9350,Acinetobacter baumannii strain MRSN2830,gentamicin,1 +9352,Acinetobacter baumannii strain MRSN2839,gentamicin,16 +9353,Acinetobacter baumannii strain MRSN2839,gentamicin,8 +9355,Acinetobacter baumannii strain MRSN2840,gentamicin,8 +9358,Acinetobacter baumannii strain MRSN3547,gentamicin,8 +9360,Acinetobacter baumannii strain MRSN3607,gentamicin,16 +9362,Acinetobacter baumannii strain MRSN3843,gentamicin,1 +9364,Acinetobacter baumannii strain MRSN3851,gentamicin,16 +9366,Acinetobacter baumannii strain MRSN3941,gentamicin,8 +9367,Acinetobacter baumannii strain MRSN3941,gentamicin,16 +9369,Acinetobacter baumannii strain MRSN4119,gentamicin,16 +9370,Acinetobacter baumannii strain MRSN4119,gentamicin,8 +9372,Acinetobacter baumannii strain MRSN4481,gentamicin,8 +9374,Acinetobacter baumannii strain MRSN5540,gentamicin,16 +9375,Acinetobacter baumannii strain MRSN5540,gentamicin,8 +9377,Acinetobacter baumannii strain MRSN6269,gentamicin,16 +9378,Acinetobacter baumannii strain MRSN6269,gentamicin,8 +9380,Acinetobacter baumannii strain MRSN6273,gentamicin,16 +9381,Acinetobacter baumannii strain MRSN6273,gentamicin,8 +9385,Acinetobacter baumannii strain MRSN7072,gentamicin,16 +9386,Acinetobacter baumannii strain MRSN7072,gentamicin,8 +9392,Acinetobacter baumannii strain MRSN7081,gentamicin,16 +9393,Acinetobacter baumannii strain MRSN7081,gentamicin,8 +9396,Acinetobacter baumannii strain MRSN7086,gentamicin,8 +9397,Acinetobacter baumannii strain MRSN7086,gentamicin,8 +9405,Acinetobacter baumannii strain MRSN7108,gentamicin,8 +9406,Acinetobacter baumannii strain MRSN7108,gentamicin,8 +9419,Acinetobacter baumannii strain MRSN7128,gentamicin,16 +9420,Acinetobacter baumannii strain MRSN7128,gentamicin,8 +9426,Acinetobacter baumannii strain MRSN7134,gentamicin,8 +9427,Acinetobacter baumannii strain MRSN7134,gentamicin,16 +9437,Acinetobacter baumannii strain MRSN7147,gentamicin,8 +9440,Acinetobacter baumannii strain MRSN7149,gentamicin,8 +9444,Acinetobacter baumannii strain MRSN7154,gentamicin,8 +9445,Acinetobacter baumannii strain MRSN7154,gentamicin,16 +9447,Acinetobacter baumannii strain MRSN7155,gentamicin,8 +9448,Acinetobacter baumannii strain MRSN7155,gentamicin,8 +9454,Acinetobacter baumannii strain MRSN7160,gentamicin,8 +9456,Acinetobacter baumannii strain MRSN7161,gentamicin,8 +9457,Acinetobacter baumannii strain MRSN7161,gentamicin,16 +9468,Acinetobacter baumannii strain MRSN7173,gentamicin,8 +9469,Acinetobacter baumannii strain MRSN7173,gentamicin,16 +9474,Acinetobacter baumannii strain MRSN7184,gentamicin,8 +9475,Acinetobacter baumannii strain MRSN7184,gentamicin,16 +9481,Acinetobacter baumannii strain MRSN7204,gentamicin,16 +9482,Acinetobacter baumannii strain MRSN7204,gentamicin,8 +9491,Acinetobacter baumannii strain MRSN7217,gentamicin,8 +9494,Acinetobacter baumannii strain MRSN7220,gentamicin,8 +9495,Acinetobacter baumannii strain MRSN7220,gentamicin,8 +9498,Acinetobacter baumannii strain MRSN7222,gentamicin,8 +9499,Acinetobacter baumannii strain MRSN7222,gentamicin,16 +9501,Acinetobacter baumannii strain MRSN7223,gentamicin,8 +9509,Acinetobacter baumannii strain MRSN7232,gentamicin,8 +9510,Acinetobacter baumannii strain MRSN7232,gentamicin,16 +9512,Acinetobacter baumannii strain MRSN7234,gentamicin,8 +9513,Acinetobacter baumannii strain MRSN7234,gentamicin,8 +9515,Acinetobacter baumannii strain MRSN7235,gentamicin,8 +9516,Acinetobacter baumannii strain MRSN7235,gentamicin,16 +9518,Acinetobacter baumannii strain MRSN7236,gentamicin,16 +9519,Acinetobacter baumannii strain MRSN7236,gentamicin,8 +9522,Acinetobacter baumannii strain MRSN7238,gentamicin,8 +9523,Acinetobacter baumannii strain MRSN7238,gentamicin,8 +9539,Acinetobacter baumannii strain MRSN7257,gentamicin,8 +9550,Acinetobacter baumannii strain MRSN7273,gentamicin,8 +9555,Acinetobacter baumannii strain MRSN7279,gentamicin,8 +9556,Acinetobacter baumannii strain MRSN7279,gentamicin,16 +9559,Acinetobacter baumannii strain MRSN7281,gentamicin,8 +9562,Acinetobacter baumannii strain MRSN7284,gentamicin,8 +9578,Acinetobacter baumannii strain MRSN7304,gentamicin,8 +9580,Acinetobacter baumannii strain MRSN7305,gentamicin,8 +9582,Acinetobacter baumannii strain MRSN7306,gentamicin,8 +9585,Acinetobacter baumannii strain MRSN7309,gentamicin,8 +9587,Acinetobacter baumannii strain MRSN7310,gentamicin,8 +9588,Acinetobacter baumannii strain MRSN7310,gentamicin,8 +9591,Acinetobacter baumannii strain MRSN7314,gentamicin,8 +9598,Acinetobacter baumannii strain MRSN7324,gentamicin,8 +9603,Acinetobacter baumannii strain MRSN7328,gentamicin,8 +9605,Acinetobacter baumannii strain MRSN7330,gentamicin,8 +9612,Acinetobacter baumannii strain MRSN7344,gentamicin,8 +9613,Acinetobacter baumannii strain MRSN7344,gentamicin,16 +9615,Acinetobacter baumannii strain MRSN7345,gentamicin,1 +9616,Acinetobacter baumannii strain MRSN7345,gentamicin,1 +9619,Acinetobacter baumannii strain MRSN7347,gentamicin,1 +9620,Acinetobacter baumannii strain MRSN7347,gentamicin,1 +9623,Acinetobacter baumannii strain MRSN7349,gentamicin,8 +9624,Acinetobacter baumannii strain MRSN7349,gentamicin,16 +9626,Acinetobacter baumannii strain MRSN7350,gentamicin,8 +9631,Acinetobacter baumannii strain MRSN7354,gentamicin,8 +9633,Acinetobacter baumannii strain MRSN7355,gentamicin,8 +9636,Acinetobacter baumannii strain MRSN7357,gentamicin,8 +9638,Acinetobacter baumannii strain MRSN7359,gentamicin,8 +9641,Acinetobacter baumannii strain MRSN7361,gentamicin,8 +9644,Acinetobacter baumannii strain MRSN7363,gentamicin,8 +9647,Acinetobacter baumannii strain MRSN7365,gentamicin,8 +9648,Acinetobacter baumannii strain MRSN7365,gentamicin,8 +9650,Acinetobacter baumannii strain MRSN7366,gentamicin,8 +9654,Acinetobacter baumannii strain MRSN7370,gentamicin,8 +9656,Acinetobacter baumannii strain MRSN7372,gentamicin,8 +9658,Acinetobacter baumannii strain MRSN7373,gentamicin,8 +9660,Acinetobacter baumannii strain MRSN7375,gentamicin,8 +9663,Acinetobacter baumannii strain MRSN7377,gentamicin,8 +9665,Acinetobacter baumannii strain MRSN7378,gentamicin,8 +9667,Acinetobacter baumannii strain MRSN7379,gentamicin,8 +9669,Acinetobacter baumannii strain MRSN7380,gentamicin,8 +9675,Acinetobacter baumannii strain MRSN7386,gentamicin,8 +9677,Acinetobacter baumannii strain MRSN7387,gentamicin,8 +9679,Acinetobacter baumannii strain MRSN7388,gentamicin,8 +9681,Acinetobacter baumannii strain MRSN7389,gentamicin,8 +9682,Acinetobacter baumannii strain MRSN7389,gentamicin,8 +9684,Acinetobacter baumannii strain MRSN7390,gentamicin,8 +9686,Acinetobacter baumannii strain MRSN7391,gentamicin,8 +9688,Acinetobacter baumannii strain MRSN7392,gentamicin,8 +9691,Acinetobacter baumannii strain MRSN7394,gentamicin,8 +9695,Acinetobacter baumannii strain MRSN7401,gentamicin,16 +9696,Acinetobacter baumannii strain MRSN7401,gentamicin,8 +9698,Acinetobacter baumannii strain MRSN7402,gentamicin,8 +9700,Acinetobacter baumannii strain MRSN7403,gentamicin,8 +9702,Acinetobacter baumannii strain MRSN7404,gentamicin,8 +9703,Acinetobacter baumannii strain MRSN7404,gentamicin,8 +9707,Acinetobacter baumannii strain MRSN7407,gentamicin,8 +9709,Acinetobacter baumannii strain MRSN7408,gentamicin,8 +9711,Acinetobacter baumannii strain MRSN7409,gentamicin,8 +9714,Acinetobacter baumannii strain MRSN7411,gentamicin,1 +9715,Acinetobacter baumannii strain MRSN7411,gentamicin,1 +9718,Acinetobacter baumannii strain MRSN7413,gentamicin,8 +9720,Acinetobacter baumannii strain MRSN7414,gentamicin,8 +9723,Acinetobacter baumannii strain MRSN7416,gentamicin,8 +9725,Acinetobacter baumannii strain MRSN7417,gentamicin,8 +9726,Acinetobacter baumannii strain MRSN7417,gentamicin,8 +9728,Acinetobacter baumannii strain MRSN7418,gentamicin,8 +9730,Acinetobacter baumannii strain MRSN7419,gentamicin,16 +9731,Acinetobacter baumannii strain MRSN7419,gentamicin,8 +9734,Acinetobacter baumannii strain MRSN7421,gentamicin,8 +9736,Acinetobacter baumannii strain MRSN7423,gentamicin,8 +9742,Acinetobacter baumannii strain MRSN7438,gentamicin,1 +9743,Acinetobacter baumannii strain MRSN7438,gentamicin,1 +9746,Acinetobacter baumannii strain MRSN7441,gentamicin,8 +9747,Acinetobacter baumannii strain MRSN7441,gentamicin,8 +9750,Acinetobacter baumannii strain MRSN7447,gentamicin,16 +9751,Acinetobacter baumannii strain MRSN7447,gentamicin,8 +9753,Acinetobacter baumannii strain MRSN7448,gentamicin,8 +9754,Acinetobacter baumannii strain MRSN7448,gentamicin,8 +9756,Acinetobacter baumannii strain MRSN7454,gentamicin,8 +9757,Acinetobacter baumannii strain MRSN7454,gentamicin,16 +9759,Acinetobacter baumannii strain MRSN7455,gentamicin,8 +9762,Acinetobacter baumannii strain MRSN7457,gentamicin,8 +9765,Acinetobacter baumannii strain MRSN7459,gentamicin,8 +9767,Acinetobacter baumannii strain MRSN7460,gentamicin,1 +9768,Acinetobacter baumannii strain MRSN7460,gentamicin,1 +9770,Acinetobacter baumannii strain MRSN7461,gentamicin,8 +9772,Acinetobacter baumannii strain MRSN7462,gentamicin,8 +9776,Acinetobacter baumannii strain MRSN7467,gentamicin,8 +9778,Acinetobacter baumannii strain MRSN7468,gentamicin,8 +9779,Acinetobacter baumannii strain MRSN7468,gentamicin,16 +9781,Acinetobacter baumannii strain MRSN7469,gentamicin,16 +9782,Acinetobacter baumannii strain MRSN7469,gentamicin,8 +9787,Acinetobacter baumannii strain MRSN7474,gentamicin,8 +9788,Acinetobacter baumannii strain MRSN7474,gentamicin,8 +9792,Acinetobacter baumannii strain MRSN7478,gentamicin,8 +9793,Acinetobacter baumannii strain MRSN7478,gentamicin,8 +9799,Acinetobacter baumannii strain MRSN7485,gentamicin,8 +9808,Acinetobacter baumannii strain MRSN7497,gentamicin,8 +9809,Acinetobacter baumannii strain MRSN7497,gentamicin,16 +9811,Acinetobacter baumannii strain MRSN7498,gentamicin,8 +9828,Acinetobacter baumannii strain MRSN7521,gentamicin,8 +9829,Acinetobacter baumannii strain MRSN7521,gentamicin,8 +9846,Acinetobacter baumannii strain MRSN7557,gentamicin,8 +9847,Acinetobacter baumannii strain MRSN7557,gentamicin,8 +9850,Acinetobacter baumannii strain MRSN7560,gentamicin,8 +9859,Acinetobacter baumannii strain MRSN7570,gentamicin,8 +9860,Acinetobacter baumannii strain MRSN7570,gentamicin,16 +9865,Acinetobacter baumannii strain MRSN7578,gentamicin,16 +9866,Acinetobacter baumannii strain MRSN7578,gentamicin,8 +9870,Acinetobacter baumannii strain MRSN7582,gentamicin,8 +9871,Acinetobacter baumannii strain MRSN7582,gentamicin,16 +9882,Acinetobacter baumannii strain MRSN7599,gentamicin,8 +9886,Acinetobacter baumannii strain MRSN7605,gentamicin,16 +9891,Acinetobacter baumannii strain MRSN7617,gentamicin,16 +9892,Acinetobacter baumannii strain MRSN7617,gentamicin,8 +9899,Acinetobacter baumannii strain MRSN7629,gentamicin,8 +9900,Acinetobacter baumannii strain MRSN7629,gentamicin,8 +9903,Acinetobacter baumannii strain MRSN7636,gentamicin,8 +9904,Acinetobacter baumannii strain MRSN7636,gentamicin,8 +9908,Acinetobacter baumannii strain MRSN7640,gentamicin,8 +9909,Acinetobacter baumannii strain MRSN7640,gentamicin,16 +9920,Acinetobacter baumannii strain MRSN7655,gentamicin,1 +9921,Acinetobacter baumannii strain MRSN7655,gentamicin,2 +9926,Acinetobacter baumannii strain MRSN7660,gentamicin,8 +9930,Acinetobacter baumannii strain MRSN7668,gentamicin,8 +9931,Acinetobacter baumannii strain MRSN7668,gentamicin,8 +9934,Acinetobacter baumannii strain MRSN7670,gentamicin,8 +9935,Acinetobacter baumannii strain MRSN7670,gentamicin,8 +9943,Acinetobacter baumannii strain MRSN7677,gentamicin,16 +9944,Acinetobacter baumannii strain MRSN7677,gentamicin,8 +9961,Acinetobacter baumannii strain MRSN7706,gentamicin,1 +9962,Acinetobacter baumannii strain MRSN7706,gentamicin,1 +9964,Acinetobacter baumannii strain MRSN7707,gentamicin,8 +9965,Acinetobacter baumannii strain MRSN7707,gentamicin,16 +9975,Acinetobacter baumannii strain MRSN7718,gentamicin,8 +9976,Acinetobacter baumannii strain MRSN7718,gentamicin,16 +9984,Acinetobacter baumannii strain MRSN7730,gentamicin,8 +9985,Acinetobacter baumannii strain MRSN7730,gentamicin,16 +9993,Acinetobacter baumannii strain MRSN7751,gentamicin,8 +9994,Acinetobacter baumannii strain MRSN7751,gentamicin,16 +10005,Acinetobacter baumannii strain MRSN7776,gentamicin,8 +10006,Acinetobacter baumannii strain MRSN7776,gentamicin,16 +10013,Acinetobacter baumannii strain MRSN7790,gentamicin,16 +10014,Acinetobacter baumannii strain MRSN7790,gentamicin,8 +10027,Acinetobacter baumannii strain MRSN7815,gentamicin,8 +10034,Acinetobacter baumannii strain MRSN7822,gentamicin,16 +10035,Acinetobacter baumannii strain MRSN7822,gentamicin,8 +10042,Acinetobacter baumannii strain MRSN7834,gentamicin,16 +10043,Acinetobacter baumannii strain MRSN7834,gentamicin,8 +10045,Acinetobacter baumannii strain MRSN83,gentamicin,8 +10046,Acinetobacter baumannii strain MRSN83,gentamicin,16 +10048,Acinetobacter baumannii strain MRSN85,gentamicin,16 +10051,Acinetobacter baumannii strain MRSN870,gentamicin,16 +10055,Acinetobacter baumannii strain MRSN888,gentamicin,8 +10058,Acinetobacter baumannii strain MRSN8899,gentamicin,8 +10059,Acinetobacter baumannii strain MRSN8899,gentamicin,16 +10061,Acinetobacter baumannii strain MRSN89,gentamicin,16 +10062,Acinetobacter baumannii strain MRSN89,gentamicin,8 +10064,Acinetobacter baumannii strain MRSN890,gentamicin,16 +10066,Acinetobacter baumannii strain MRSN8900,gentamicin,8 +10067,Acinetobacter baumannii strain MRSN8900,gentamicin,8 +10069,Acinetobacter baumannii strain MRSN8901,gentamicin,8 +10070,Acinetobacter baumannii strain MRSN8901,gentamicin,8 +10072,Acinetobacter baumannii strain MRSN8902,gentamicin,8 +10073,Acinetobacter baumannii strain MRSN8902,gentamicin,16 +10075,Acinetobacter baumannii strain MRSN8903,gentamicin,16 +10076,Acinetobacter baumannii strain MRSN8903,gentamicin,8 +10080,Acinetobacter baumannii strain MRSN899,gentamicin,16 +10083,Acinetobacter baumannii strain MRSN908,gentamicin,16 +10084,Acinetobacter baumannii strain MRSN908,gentamicin,8 +10086,Acinetobacter baumannii strain MRSN909,gentamicin,16 +10088,Acinetobacter baumannii strain MRSN910,gentamicin,16 +10091,Acinetobacter baumannii strain MRSN916,gentamicin,8 +10093,Acinetobacter baumannii strain MRSN917,gentamicin,16 +10095,Acinetobacter baumannii strain MRSN919,gentamicin,16 +10097,Acinetobacter baumannii strain MRSN920,gentamicin,16 +10099,Acinetobacter baumannii strain MRSN921,gentamicin,8 +10101,Acinetobacter baumannii strain MRSN922,gentamicin,8 +10103,Acinetobacter baumannii strain MRSN926,gentamicin,8 +10105,Acinetobacter baumannii strain MRSN927,gentamicin,16 +10107,Acinetobacter baumannii strain MRSN929,gentamicin,16 +10109,Acinetobacter baumannii strain MRSN939,gentamicin,8 +10111,Acinetobacter baumannii strain MRSN946,gentamicin,16 +10113,Acinetobacter baumannii strain MRSN953,gentamicin,16 +10115,Acinetobacter baumannii strain MRSN966,gentamicin,8 +10229,Acinetobacter baumannii strain MRSN11747,imipenem,16 +10253,Acinetobacter baumannii strain MRSN11783,imipenem,4 +10256,Acinetobacter baumannii strain MRSN11788,imipenem,2 +10263,Acinetobacter baumannii strain MRSN11797,imipenem,4 +10267,Acinetobacter baumannii strain MRSN11806,imipenem,0.5 +10269,Acinetobacter baumannii strain MRSN11807,imipenem,1 +10271,Acinetobacter baumannii strain MRSN11811,imipenem,0.5 +10273,Acinetobacter baumannii strain MRSN11812,imipenem,0.5 +10275,Acinetobacter baumannii strain MRSN11813,imipenem,0.5 +10277,Acinetobacter baumannii strain MRSN11815,imipenem,0.25 +10279,Acinetobacter baumannii strain MRSN11816,imipenem,0.25 +10281,Acinetobacter baumannii strain MRSN11819,imipenem,4 +10283,Acinetobacter baumannii strain MRSN11820,imipenem,16 +10285,Acinetobacter baumannii strain MRSN11821,imipenem,1 +10287,Acinetobacter baumannii strain MRSN11822,imipenem,0.25 +10289,Acinetobacter baumannii strain MRSN11823,imipenem,2 +10291,Acinetobacter baumannii strain MRSN11826,imipenem,4 +10294,Acinetobacter baumannii strain MRSN1309,imipenem,16 +10296,Acinetobacter baumannii strain MRSN1339,imipenem,1 +10298,Acinetobacter baumannii strain MRSN1410,imipenem,16 +10300,Acinetobacter baumannii strain MRSN1420,imipenem,1 +10302,Acinetobacter baumannii strain MRSN1428,imipenem,1 +10304,Acinetobacter baumannii strain MRSN1439,imipenem,1 +10306,Acinetobacter baumannii strain MRSN1449,imipenem,1 +10308,Acinetobacter baumannii strain MRSN1450,imipenem,8 +10310,Acinetobacter baumannii strain MRSN1461,imipenem,16 +10313,Acinetobacter baumannii strain MRSN15038,imipenem,4 +10315,Acinetobacter baumannii strain MRSN15039,imipenem,1 +10319,Acinetobacter baumannii strain MRSN15045,imipenem,0.25 +10321,Acinetobacter baumannii strain MRSN15046,imipenem,0.25 +10324,Acinetobacter baumannii strain MRSN15048,imipenem,16 +10327,Acinetobacter baumannii strain MRSN15065,imipenem,2 +10329,Acinetobacter baumannii strain MRSN15066,imipenem,1 +10333,Acinetobacter baumannii strain MRSN15070,imipenem,0.25 +10341,Acinetobacter baumannii strain MRSN15079,imipenem,2 +10344,Acinetobacter baumannii strain MRSN15081,imipenem,16 +10348,Acinetobacter baumannii strain MRSN15084,imipenem,1 +10349,Acinetobacter baumannii strain MRSN15084,imipenem,2 +10351,Acinetobacter baumannii strain MRSN15085,imipenem,8 +10353,Acinetobacter baumannii strain MRSN15086,imipenem,2 +10357,Acinetobacter baumannii strain MRSN1551,imipenem,1 +10359,Acinetobacter baumannii strain MRSN1598,imipenem,1 +10361,Acinetobacter baumannii strain MRSN16874,imipenem,16 +10363,Acinetobacter baumannii strain MRSN16881,imipenem,8 +10365,Acinetobacter baumannii strain MRSN16882,imipenem,8 +10367,Acinetobacter baumannii strain MRSN16896,imipenem,2 +10369,Acinetobacter baumannii strain MRSN16897,imipenem,1 +10371,Acinetobacter baumannii strain MRSN16898,imipenem,1 +10373,Acinetobacter baumannii strain MRSN16901,imipenem,1 +10375,Acinetobacter baumannii strain MRSN1738,imipenem,8 +10378,Acinetobacter baumannii strain MRSN17593,imipenem,1 +10380,Acinetobacter baumannii strain MRSN1967,imipenem,16 +10384,Acinetobacter baumannii strain MRSN1980,imipenem,4 +10386,Acinetobacter baumannii strain MRSN1987,imipenem,2 +10388,Acinetobacter baumannii strain MRSN1988,imipenem,1 +10390,Acinetobacter baumannii strain MRSN1992,imipenem,2 +10393,Acinetobacter baumannii strain MRSN2009,imipenem,1 +10395,Acinetobacter baumannii strain MRSN2021,imipenem,1 +10397,Acinetobacter baumannii strain MRSN2024,imipenem,8 +10399,Acinetobacter baumannii strain MRSN20315,imipenem,4 +10401,Acinetobacter baumannii strain MRSN20755,imipenem,4 +10403,Acinetobacter baumannii strain MRSN2427,imipenem,8 +10405,Acinetobacter baumannii strain MRSN2441,imipenem,16 +10407,Acinetobacter baumannii strain MRSN2821,imipenem,1 +10409,Acinetobacter baumannii strain MRSN2830,imipenem,1 +10411,Acinetobacter baumannii strain MRSN2839,imipenem,8 +10413,Acinetobacter baumannii strain MRSN2840,imipenem,1 +10415,Acinetobacter baumannii strain MRSN3360,imipenem,16 +10417,Acinetobacter baumannii strain MRSN3547,imipenem,8 +10420,Acinetobacter baumannii strain MRSN3843,imipenem,1 +10422,Acinetobacter baumannii strain MRSN3851,imipenem,16 +10424,Acinetobacter baumannii strain MRSN3941,imipenem,16 +10426,Acinetobacter baumannii strain MRSN4119,imipenem,16 +10429,Acinetobacter baumannii strain MRSN5540,imipenem,16 +10431,Acinetobacter baumannii strain MRSN6269,imipenem,8 +10435,Acinetobacter baumannii strain MRSN7069,imipenem,1 +10438,Acinetobacter baumannii strain MRSN7072,imipenem,1 +10444,Acinetobacter baumannii strain MRSN7081,imipenem,8 +10447,Acinetobacter baumannii strain MRSN7086,imipenem,1 +10454,Acinetobacter baumannii strain MRSN7108,imipenem,16 +10467,Acinetobacter baumannii strain MRSN7128,imipenem,2 +10473,Acinetobacter baumannii strain MRSN7134,imipenem,2 +10484,Acinetobacter baumannii strain MRSN7149,imipenem,8 +10488,Acinetobacter baumannii strain MRSN7154,imipenem,1 +10490,Acinetobacter baumannii strain MRSN7155,imipenem,1 +10496,Acinetobacter baumannii strain MRSN7160,imipenem,8 +10498,Acinetobacter baumannii strain MRSN7161,imipenem,2 +10507,Acinetobacter baumannii strain MRSN7170,imipenem,4 +10511,Acinetobacter baumannii strain MRSN7173,imipenem,2 +10516,Acinetobacter baumannii strain MRSN7184,imipenem,1 +10522,Acinetobacter baumannii strain MRSN7204,imipenem,1 +10533,Acinetobacter baumannii strain MRSN7220,imipenem,1 +10536,Acinetobacter baumannii strain MRSN7222,imipenem,8 +10538,Acinetobacter baumannii strain MRSN7223,imipenem,8 +10546,Acinetobacter baumannii strain MRSN7232,imipenem,8 +10548,Acinetobacter baumannii strain MRSN7234,imipenem,16 +10550,Acinetobacter baumannii strain MRSN7235,imipenem,16 +10552,Acinetobacter baumannii strain MRSN7236,imipenem,8 +10555,Acinetobacter baumannii strain MRSN7238,imipenem,2 +10571,Acinetobacter baumannii strain MRSN7257,imipenem,16 +10586,Acinetobacter baumannii strain MRSN7279,imipenem,1 +10591,Acinetobacter baumannii strain MRSN7284,imipenem,8 +10608,Acinetobacter baumannii strain MRSN7305,imipenem,4 +10610,Acinetobacter baumannii strain MRSN7306,imipenem,8 +10614,Acinetobacter baumannii strain MRSN7310,imipenem,1 +10627,Acinetobacter baumannii strain MRSN7328,imipenem,4 +10629,Acinetobacter baumannii strain MRSN7330,imipenem,4 +10636,Acinetobacter baumannii strain MRSN7344,imipenem,1 +10638,Acinetobacter baumannii strain MRSN7345,imipenem,1 +10641,Acinetobacter baumannii strain MRSN7347,imipenem,1 +10644,Acinetobacter baumannii strain MRSN7349,imipenem,1 +10654,Acinetobacter baumannii strain MRSN7359,imipenem,16 +10661,Acinetobacter baumannii strain MRSN7365,imipenem,1 +10666,Acinetobacter baumannii strain MRSN7370,imipenem,8 +10668,Acinetobacter baumannii strain MRSN7372,imipenem,2 +10671,Acinetobacter baumannii strain MRSN7375,imipenem,16 +10674,Acinetobacter baumannii strain MRSN7377,imipenem,8 +10676,Acinetobacter baumannii strain MRSN7378,imipenem,8 +10679,Acinetobacter baumannii strain MRSN7380,imipenem,16 +10686,Acinetobacter baumannii strain MRSN7387,imipenem,8 +10688,Acinetobacter baumannii strain MRSN7389,imipenem,8 +10690,Acinetobacter baumannii strain MRSN7390,imipenem,16 +10695,Acinetobacter baumannii strain MRSN7394,imipenem,16 +10699,Acinetobacter baumannii strain MRSN7401,imipenem,16 +10701,Acinetobacter baumannii strain MRSN7402,imipenem,16 +10703,Acinetobacter baumannii strain MRSN7403,imipenem,8 +10705,Acinetobacter baumannii strain MRSN7404,imipenem,1 +10707,Acinetobacter baumannii strain MRSN7405,imipenem,1 +10710,Acinetobacter baumannii strain MRSN7407,imipenem,8 +10712,Acinetobacter baumannii strain MRSN7408,imipenem,8 +10714,Acinetobacter baumannii strain MRSN7409,imipenem,16 +10717,Acinetobacter baumannii strain MRSN7411,imipenem,8 +10720,Acinetobacter baumannii strain MRSN7413,imipenem,16 +10722,Acinetobacter baumannii strain MRSN7414,imipenem,16 +10725,Acinetobacter baumannii strain MRSN7416,imipenem,8 +10727,Acinetobacter baumannii strain MRSN7417,imipenem,8 +10729,Acinetobacter baumannii strain MRSN7418,imipenem,8 +10733,Acinetobacter baumannii strain MRSN7423,imipenem,8 +10739,Acinetobacter baumannii strain MRSN7438,imipenem,16 +10742,Acinetobacter baumannii strain MRSN7441,imipenem,1 +10745,Acinetobacter baumannii strain MRSN7447,imipenem,16 +10747,Acinetobacter baumannii strain MRSN7448,imipenem,4 +10749,Acinetobacter baumannii strain MRSN7454,imipenem,8 +10755,Acinetobacter baumannii strain MRSN7460,imipenem,1 +10757,Acinetobacter baumannii strain MRSN7461,imipenem,8 +10759,Acinetobacter baumannii strain MRSN7462,imipenem,16 +10763,Acinetobacter baumannii strain MRSN7467,imipenem,8 +10765,Acinetobacter baumannii strain MRSN7468,imipenem,1 +10767,Acinetobacter baumannii strain MRSN7469,imipenem,1 +10772,Acinetobacter baumannii strain MRSN7474,imipenem,1 +10774,Acinetobacter baumannii strain MRSN7475,imipenem,8 +10777,Acinetobacter baumannii strain MRSN7478,imipenem,16 +10783,Acinetobacter baumannii strain MRSN7485,imipenem,8 +10792,Acinetobacter baumannii strain MRSN7497,imipenem,16 +10794,Acinetobacter baumannii strain MRSN7498,imipenem,16 +10811,Acinetobacter baumannii strain MRSN7521,imipenem,8 +10829,Acinetobacter baumannii strain MRSN7557,imipenem,8 +10839,Acinetobacter baumannii strain MRSN7570,imipenem,2 +10844,Acinetobacter baumannii strain MRSN7578,imipenem,8 +10848,Acinetobacter baumannii strain MRSN7582,imipenem,16 +10859,Acinetobacter baumannii strain MRSN7599,imipenem,16 +10868,Acinetobacter baumannii strain MRSN7617,imipenem,8 +10876,Acinetobacter baumannii strain MRSN7636,imipenem,8 +10880,Acinetobacter baumannii strain MRSN7640,imipenem,8 +10891,Acinetobacter baumannii strain MRSN7655,imipenem,1 +10898,Acinetobacter baumannii strain MRSN7668,imipenem,8 +10901,Acinetobacter baumannii strain MRSN7670,imipenem,16 +10909,Acinetobacter baumannii strain MRSN7677,imipenem,8 +10926,Acinetobacter baumannii strain MRSN7706,imipenem,16 +10928,Acinetobacter baumannii strain MRSN7707,imipenem,16 +10937,Acinetobacter baumannii strain MRSN7718,imipenem,8 +10986,Acinetobacter baumannii strain MRSN7822,imipenem,8 +10993,Acinetobacter baumannii strain MRSN7834,imipenem,8 +10994,Acinetobacter baumannii strain MRSN7834,imipenem,16 +10996,Acinetobacter baumannii strain MRSN83,imipenem,16 +10998,Acinetobacter baumannii strain MRSN85,imipenem,16 +10999,Acinetobacter baumannii strain MRSN85,imipenem,8 +11002,Acinetobacter baumannii strain MRSN870,imipenem,16 +11006,Acinetobacter baumannii strain MRSN888,imipenem,1 +11010,Acinetobacter baumannii strain MRSN89,imipenem,16 +11012,Acinetobacter baumannii strain MRSN890,imipenem,16 +11019,Acinetobacter baumannii strain MRSN899,imipenem,8 +11022,Acinetobacter baumannii strain MRSN909,imipenem,16 +11025,Acinetobacter baumannii strain MRSN915,imipenem,16 +11028,Acinetobacter baumannii strain MRSN922,imipenem,16 +11031,Acinetobacter baumannii strain MRSN929,imipenem,16 +11033,Acinetobacter baumannii strain MRSN946,imipenem,8 +11035,Acinetobacter baumannii strain MRSN953,imipenem,16 +11037,Acinetobacter baumannii strain MRSN966,imipenem,8 +11094,Acinetobacter baumannii strain MRSN10371,levofloxacin,8 +11095,Acinetobacter baumannii strain MRSN10371,levofloxacin,4 +11098,Acinetobacter baumannii strain MRSN11653,levofloxacin,4 +11099,Acinetobacter baumannii strain MRSN11653,levofloxacin,4 +11101,Acinetobacter baumannii strain MRSN11659,levofloxacin,4 +11102,Acinetobacter baumannii strain MRSN11659,levofloxacin,4 +11105,Acinetobacter baumannii strain MRSN11669,levofloxacin,4 +11106,Acinetobacter baumannii strain MRSN11669,levofloxacin,4 +11108,Acinetobacter baumannii strain MRSN11675,levofloxacin,4 +11110,Acinetobacter baumannii strain MRSN11679,levofloxacin,4 +11116,Acinetobacter baumannii strain MRSN11688,levofloxacin,4 +11117,Acinetobacter baumannii strain MRSN11688,levofloxacin,4 +11123,Acinetobacter baumannii strain MRSN11701,levofloxacin,4 +11126,Acinetobacter baumannii strain MRSN11708,levofloxacin,4 +11127,Acinetobacter baumannii strain MRSN11708,levofloxacin,4 +11140,Acinetobacter baumannii strain MRSN11729,levofloxacin,2 +11141,Acinetobacter baumannii strain MRSN11729,levofloxacin,1 +11147,Acinetobacter baumannii strain MRSN11742,levofloxacin,4 +11148,Acinetobacter baumannii strain MRSN11742,levofloxacin,4 +11152,Acinetobacter baumannii strain MRSN11747,levofloxacin,4 +11153,Acinetobacter baumannii strain MRSN11747,levofloxacin,8 +11159,Acinetobacter baumannii strain MRSN11760,levofloxacin,4 +11165,Acinetobacter baumannii strain MRSN11765,levofloxacin,0.12 +11166,Acinetobacter baumannii strain MRSN11765,levofloxacin,1 +11173,Acinetobacter baumannii strain MRSN11772,levofloxacin,8 +11174,Acinetobacter baumannii strain MRSN11772,levofloxacin,4 +11176,Acinetobacter baumannii strain MRSN11774,levofloxacin,8 +11177,Acinetobacter baumannii strain MRSN11774,levofloxacin,4 +11184,Acinetobacter baumannii strain MRSN11783,levofloxacin,4 +11187,Acinetobacter baumannii strain MRSN11788,levofloxacin,4 +11194,Acinetobacter baumannii strain MRSN11797,levofloxacin,4 +11197,Acinetobacter baumannii strain MRSN11803,levofloxacin,4 +11199,Acinetobacter baumannii strain MRSN11804,levofloxacin,4 +11201,Acinetobacter baumannii strain MRSN11806,levofloxacin,4 +11203,Acinetobacter baumannii strain MRSN11807,levofloxacin,4 +11205,Acinetobacter baumannii strain MRSN11811,levofloxacin,4 +11207,Acinetobacter baumannii strain MRSN11812,levofloxacin,4 +11210,Acinetobacter baumannii strain MRSN11815,levofloxacin,1 +11212,Acinetobacter baumannii strain MRSN11816,levofloxacin,1 +11215,Acinetobacter baumannii strain MRSN11820,levofloxacin,4 +11217,Acinetobacter baumannii strain MRSN11822,levofloxacin,2 +11219,Acinetobacter baumannii strain MRSN11823,levofloxacin,4 +11221,Acinetobacter baumannii strain MRSN11826,levofloxacin,1 +11225,Acinetobacter baumannii strain MRSN1339,levofloxacin,2 +11226,Acinetobacter baumannii strain MRSN1339,levofloxacin,1 +11228,Acinetobacter baumannii strain MRSN1410,levofloxacin,4 +11230,Acinetobacter baumannii strain MRSN1420,levofloxacin,4 +11232,Acinetobacter baumannii strain MRSN1428,levofloxacin,0.12 +11234,Acinetobacter baumannii strain MRSN1439,levofloxacin,1 +11236,Acinetobacter baumannii strain MRSN1449,levofloxacin,1 +11238,Acinetobacter baumannii strain MRSN1450,levofloxacin,4 +11240,Acinetobacter baumannii strain MRSN1461,levofloxacin,4 +11243,Acinetobacter baumannii strain MRSN15039,levofloxacin,4 +11245,Acinetobacter baumannii strain MRSN15042,levofloxacin,1 +11249,Acinetobacter baumannii strain MRSN15045,levofloxacin,2 +11251,Acinetobacter baumannii strain MRSN15046,levofloxacin,2 +11254,Acinetobacter baumannii strain MRSN15048,levofloxacin,4 +11257,Acinetobacter baumannii strain MRSN15065,levofloxacin,4 +11259,Acinetobacter baumannii strain MRSN15066,levofloxacin,4 +11263,Acinetobacter baumannii strain MRSN15070,levofloxacin,2 +11271,Acinetobacter baumannii strain MRSN15079,levofloxacin,4 +11274,Acinetobacter baumannii strain MRSN15081,levofloxacin,4 +11278,Acinetobacter baumannii strain MRSN15084,levofloxacin,4 +11279,Acinetobacter baumannii strain MRSN15084,levofloxacin,4 +11281,Acinetobacter baumannii strain MRSN15085,levofloxacin,4 +11283,Acinetobacter baumannii strain MRSN15086,levofloxacin,1 +11287,Acinetobacter baumannii strain MRSN1551,levofloxacin,1 +11289,Acinetobacter baumannii strain MRSN1598,levofloxacin,1 +11291,Acinetobacter baumannii strain MRSN16874,levofloxacin,4 +11297,Acinetobacter baumannii strain MRSN16901,levofloxacin,4 +11299,Acinetobacter baumannii strain MRSN1738,levofloxacin,4 +11302,Acinetobacter baumannii strain MRSN17593,levofloxacin,4 +11304,Acinetobacter baumannii strain MRSN1967,levofloxacin,4 +11308,Acinetobacter baumannii strain MRSN1987,levofloxacin,8 +11310,Acinetobacter baumannii strain MRSN1988,levofloxacin,4 +11312,Acinetobacter baumannii strain MRSN1992,levofloxacin,4 +11314,Acinetobacter baumannii strain MRSN1998,levofloxacin,8 +11316,Acinetobacter baumannii strain MRSN2009,levofloxacin,1 +11318,Acinetobacter baumannii strain MRSN2021,levofloxacin,4 +11320,Acinetobacter baumannii strain MRSN2024,levofloxacin,4 +11323,Acinetobacter baumannii strain MRSN20755,levofloxacin,1 +11325,Acinetobacter baumannii strain MRSN2427,levofloxacin,4 +11326,Acinetobacter baumannii strain MRSN2427,levofloxacin,8 +11328,Acinetobacter baumannii strain MRSN2441,levofloxacin,4 +11329,Acinetobacter baumannii strain MRSN2441,levofloxacin,8 +11331,Acinetobacter baumannii strain MRSN2821,levofloxacin,0.12 +11332,Acinetobacter baumannii strain MRSN2821,levofloxacin,2 +11334,Acinetobacter baumannii strain MRSN2830,levofloxacin,1 +11335,Acinetobacter baumannii strain MRSN2830,levofloxacin,2 +11337,Acinetobacter baumannii strain MRSN2839,levofloxacin,8 +11338,Acinetobacter baumannii strain MRSN2839,levofloxacin,4 +11340,Acinetobacter baumannii strain MRSN2840,levofloxacin,8 +11341,Acinetobacter baumannii strain MRSN2840,levofloxacin,4 +11343,Acinetobacter baumannii strain MRSN3360,levofloxacin,8 +11345,Acinetobacter baumannii strain MRSN3547,levofloxacin,4 +11348,Acinetobacter baumannii strain MRSN3843,levofloxacin,1 +11350,Acinetobacter baumannii strain MRSN3851,levofloxacin,8 +11352,Acinetobacter baumannii strain MRSN3941,levofloxacin,4 +11353,Acinetobacter baumannii strain MRSN3941,levofloxacin,8 +11355,Acinetobacter baumannii strain MRSN4119,levofloxacin,8 +11356,Acinetobacter baumannii strain MRSN4119,levofloxacin,4 +11358,Acinetobacter baumannii strain MRSN4481,levofloxacin,8 +11360,Acinetobacter baumannii strain MRSN5540,levofloxacin,4 +11361,Acinetobacter baumannii strain MRSN5540,levofloxacin,4 +11363,Acinetobacter baumannii strain MRSN6269,levofloxacin,4 +11364,Acinetobacter baumannii strain MRSN6269,levofloxacin,8 +11366,Acinetobacter baumannii strain MRSN6273,levofloxacin,4 +11367,Acinetobacter baumannii strain MRSN6273,levofloxacin,8 +11370,Acinetobacter baumannii strain MRSN7069,levofloxacin,8 +11371,Acinetobacter baumannii strain MRSN7069,levofloxacin,4 +11374,Acinetobacter baumannii strain MRSN7072,levofloxacin,4 +11375,Acinetobacter baumannii strain MRSN7072,levofloxacin,8 +11381,Acinetobacter baumannii strain MRSN7081,levofloxacin,2 +11382,Acinetobacter baumannii strain MRSN7081,levofloxacin,1 +11392,Acinetobacter baumannii strain MRSN7108,levofloxacin,4 +11393,Acinetobacter baumannii strain MRSN7108,levofloxacin,8 +11404,Acinetobacter baumannii strain MRSN7128,levofloxacin,8 +11405,Acinetobacter baumannii strain MRSN7128,levofloxacin,4 +11409,Acinetobacter baumannii strain MRSN7134,levofloxacin,4 +11410,Acinetobacter baumannii strain MRSN7134,levofloxacin,8 +11419,Acinetobacter baumannii strain MRSN7147,levofloxacin,2 +11422,Acinetobacter baumannii strain MRSN7149,levofloxacin,2 +11426,Acinetobacter baumannii strain MRSN7154,levofloxacin,4 +11427,Acinetobacter baumannii strain MRSN7154,levofloxacin,8 +11429,Acinetobacter baumannii strain MRSN7155,levofloxacin,8 +11430,Acinetobacter baumannii strain MRSN7155,levofloxacin,4 +11435,Acinetobacter baumannii strain MRSN7161,levofloxacin,4 +11436,Acinetobacter baumannii strain MRSN7161,levofloxacin,4 +11447,Acinetobacter baumannii strain MRSN7173,levofloxacin,4 +11448,Acinetobacter baumannii strain MRSN7173,levofloxacin,4 +11453,Acinetobacter baumannii strain MRSN7184,levofloxacin,2 +11454,Acinetobacter baumannii strain MRSN7184,levofloxacin,1 +11459,Acinetobacter baumannii strain MRSN7204,levofloxacin,0.25 +11460,Acinetobacter baumannii strain MRSN7204,levofloxacin,2 +11469,Acinetobacter baumannii strain MRSN7217,levofloxacin,1 +11470,Acinetobacter baumannii strain MRSN7217,levofloxacin,0.5 +11473,Acinetobacter baumannii strain MRSN7220,levofloxacin,2 +11476,Acinetobacter baumannii strain MRSN7222,levofloxacin,4 +11477,Acinetobacter baumannii strain MRSN7222,levofloxacin,8 +11479,Acinetobacter baumannii strain MRSN7223,levofloxacin,1 +11480,Acinetobacter baumannii strain MRSN7223,levofloxacin,2 +11486,Acinetobacter baumannii strain MRSN7232,levofloxacin,4 +11487,Acinetobacter baumannii strain MRSN7232,levofloxacin,4 +11489,Acinetobacter baumannii strain MRSN7234,levofloxacin,4 +11490,Acinetobacter baumannii strain MRSN7234,levofloxacin,8 +11492,Acinetobacter baumannii strain MRSN7235,levofloxacin,4 +11493,Acinetobacter baumannii strain MRSN7235,levofloxacin,8 +11495,Acinetobacter baumannii strain MRSN7236,levofloxacin,8 +11496,Acinetobacter baumannii strain MRSN7236,levofloxacin,4 +11525,Acinetobacter baumannii strain MRSN7279,levofloxacin,4 +11528,Acinetobacter baumannii strain MRSN7281,levofloxacin,2 +11544,Acinetobacter baumannii strain MRSN7310,levofloxacin,8 +11545,Acinetobacter baumannii strain MRSN7310,levofloxacin,4 +11559,Acinetobacter baumannii strain MRSN7344,levofloxacin,8 +11560,Acinetobacter baumannii strain MRSN7344,levofloxacin,4 +11562,Acinetobacter baumannii strain MRSN7345,levofloxacin,1 +11563,Acinetobacter baumannii strain MRSN7345,levofloxacin,0.12 +11566,Acinetobacter baumannii strain MRSN7347,levofloxacin,0.12 +11567,Acinetobacter baumannii strain MRSN7347,levofloxacin,1 +11570,Acinetobacter baumannii strain MRSN7349,levofloxacin,8 +11579,Acinetobacter baumannii strain MRSN7365,levofloxacin,8 +11583,Acinetobacter baumannii strain MRSN7370,levofloxacin,2 +11596,Acinetobacter baumannii strain MRSN7401,levofloxacin,8 +11597,Acinetobacter baumannii strain MRSN7401,levofloxacin,4 +11601,Acinetobacter baumannii strain MRSN7408,levofloxacin,4 +11602,Acinetobacter baumannii strain MRSN7408,levofloxacin,8 +11607,Acinetobacter baumannii strain MRSN7417,levofloxacin,4 +11608,Acinetobacter baumannii strain MRSN7417,levofloxacin,4 +11610,Acinetobacter baumannii strain MRSN7418,levofloxacin,4 +11611,Acinetobacter baumannii strain MRSN7418,levofloxacin,8 +11614,Acinetobacter baumannii strain MRSN7423,levofloxacin,8 +11615,Acinetobacter baumannii strain MRSN7423,levofloxacin,4 +11622,Acinetobacter baumannii strain MRSN7441,levofloxacin,2 +11623,Acinetobacter baumannii strain MRSN7441,levofloxacin,2 +11626,Acinetobacter baumannii strain MRSN7447,levofloxacin,8 +11627,Acinetobacter baumannii strain MRSN7447,levofloxacin,4 +11629,Acinetobacter baumannii strain MRSN7448,levofloxacin,4 +11630,Acinetobacter baumannii strain MRSN7448,levofloxacin,4 +11634,Acinetobacter baumannii strain MRSN7460,levofloxacin,2 +11635,Acinetobacter baumannii strain MRSN7460,levofloxacin,0.12 +11640,Acinetobacter baumannii strain MRSN7468,levofloxacin,8 +11641,Acinetobacter baumannii strain MRSN7468,levofloxacin,4 +11643,Acinetobacter baumannii strain MRSN7469,levofloxacin,2 +11644,Acinetobacter baumannii strain MRSN7469,levofloxacin,1 +11649,Acinetobacter baumannii strain MRSN7474,levofloxacin,2 +11650,Acinetobacter baumannii strain MRSN7474,levofloxacin,2 +11654,Acinetobacter baumannii strain MRSN7478,levofloxacin,8 +11655,Acinetobacter baumannii strain MRSN7478,levofloxacin,4 +11668,Acinetobacter baumannii strain MRSN7497,levofloxacin,4 +11669,Acinetobacter baumannii strain MRSN7497,levofloxacin,4 +11683,Acinetobacter baumannii strain MRSN7521,levofloxacin,8 +11684,Acinetobacter baumannii strain MRSN7521,levofloxacin,4 +11709,Acinetobacter baumannii strain MRSN7570,levofloxacin,8 +11710,Acinetobacter baumannii strain MRSN7570,levofloxacin,4 +11735,Acinetobacter baumannii strain MRSN7629,levofloxacin,4 +11736,Acinetobacter baumannii strain MRSN7629,levofloxacin,4 +11750,Acinetobacter baumannii strain MRSN7655,levofloxacin,2 +11751,Acinetobacter baumannii strain MRSN7655,levofloxacin,0.12 +11756,Acinetobacter baumannii strain MRSN7668,levofloxacin,4 +11757,Acinetobacter baumannii strain MRSN7668,levofloxacin,4 +11760,Acinetobacter baumannii strain MRSN7670,levofloxacin,4 +11761,Acinetobacter baumannii strain MRSN7670,levofloxacin,8 +11783,Acinetobacter baumannii strain MRSN7707,levofloxacin,8 +11784,Acinetobacter baumannii strain MRSN7707,levofloxacin,4 +11794,Acinetobacter baumannii strain MRSN7718,levofloxacin,4 +11795,Acinetobacter baumannii strain MRSN7718,levofloxacin,8 +11802,Acinetobacter baumannii strain MRSN7730,levofloxacin,8 +11803,Acinetobacter baumannii strain MRSN7730,levofloxacin,4 +11820,Acinetobacter baumannii strain MRSN7776,levofloxacin,4 +11821,Acinetobacter baumannii strain MRSN7776,levofloxacin,4 +11828,Acinetobacter baumannii strain MRSN7790,levofloxacin,4 +11829,Acinetobacter baumannii strain MRSN7790,levofloxacin,8 +11846,Acinetobacter baumannii strain MRSN7822,levofloxacin,4 +11853,Acinetobacter baumannii strain MRSN83,levofloxacin,4 +11854,Acinetobacter baumannii strain MRSN83,levofloxacin,4 +11856,Acinetobacter baumannii strain MRSN85,levofloxacin,4 +11857,Acinetobacter baumannii strain MRSN85,levofloxacin,4 +11862,Acinetobacter baumannii strain MRSN888,levofloxacin,4 +11865,Acinetobacter baumannii strain MRSN8899,levofloxacin,4 +11866,Acinetobacter baumannii strain MRSN8899,levofloxacin,8 +11868,Acinetobacter baumannii strain MRSN89,levofloxacin,8 +11870,Acinetobacter baumannii strain MRSN890,levofloxacin,4 +11872,Acinetobacter baumannii strain MRSN8900,levofloxacin,8 +11873,Acinetobacter baumannii strain MRSN8900,levofloxacin,4 +11875,Acinetobacter baumannii strain MRSN8901,levofloxacin,8 +11876,Acinetobacter baumannii strain MRSN8901,levofloxacin,4 +11878,Acinetobacter baumannii strain MRSN8902,levofloxacin,4 +11879,Acinetobacter baumannii strain MRSN8902,levofloxacin,8 +11881,Acinetobacter baumannii strain MRSN8903,levofloxacin,8 +11882,Acinetobacter baumannii strain MRSN8903,levofloxacin,4 +11886,Acinetobacter baumannii strain MRSN899,levofloxacin,8 +11889,Acinetobacter baumannii strain MRSN908,levofloxacin,4 +11890,Acinetobacter baumannii strain MRSN908,levofloxacin,4 +11892,Acinetobacter baumannii strain MRSN909,levofloxacin,8 +11894,Acinetobacter baumannii strain MRSN910,levofloxacin,8 +11896,Acinetobacter baumannii strain MRSN915,levofloxacin,8 +11898,Acinetobacter baumannii strain MRSN916,levofloxacin,4 +11900,Acinetobacter baumannii strain MRSN917,levofloxacin,8 +11902,Acinetobacter baumannii strain MRSN919,levofloxacin,8 +11904,Acinetobacter baumannii strain MRSN920,levofloxacin,4 +11906,Acinetobacter baumannii strain MRSN921,levofloxacin,8 +11908,Acinetobacter baumannii strain MRSN926,levofloxacin,8 +11910,Acinetobacter baumannii strain MRSN927,levofloxacin,8 +11912,Acinetobacter baumannii strain MRSN929,levofloxacin,8 +11914,Acinetobacter baumannii strain MRSN939,levofloxacin,4 +11916,Acinetobacter baumannii strain MRSN946,levofloxacin,8 +11918,Acinetobacter baumannii strain MRSN953,levofloxacin,4 +11920,Acinetobacter baumannii strain MRSN966,levofloxacin,4 +12080,Acinetobacter baumannii strain MRSN15038,meropenem,2 +12107,Acinetobacter baumannii strain MRSN15084,meropenem,1 +12146,Acinetobacter baumannii strain MRSN3941,meropenem,8 +12188,Acinetobacter baumannii strain MRSN7521,meropenem,8 +12223,Acinetobacter baumannii strain MRSN83,meropenem,16 +12225,Acinetobacter baumannii strain MRSN85,meropenem,8 +12233,Acinetobacter baumannii strain MRSN89,meropenem,16 +12317,Acinetobacter baumannii strain MRSN15038,moxifloxacin,0.25 +12344,Acinetobacter baumannii strain MRSN15084,moxifloxacin,8 +12485,Acinetobacter baumannii strain MRSN15038,nitrofurantoin,512 +12512,Acinetobacter baumannii strain MRSN15084,nitrofurantoin,512 +13264,Acinetobacter baumannii strain MRSN10371,tetracycline,8 +13267,Acinetobacter baumannii strain MRSN11653,tetracycline,8 +13269,Acinetobacter baumannii strain MRSN11659,tetracycline,4 +13271,Acinetobacter baumannii strain MRSN11660,tetracycline,8 +13274,Acinetobacter baumannii strain MRSN11674,tetracycline,8 +13276,Acinetobacter baumannii strain MRSN11675,tetracycline,8 +13282,Acinetobacter baumannii strain MRSN11688,tetracycline,4 +13287,Acinetobacter baumannii strain MRSN11701,tetracycline,8 +13289,Acinetobacter baumannii strain MRSN11705,tetracycline,8 +13291,Acinetobacter baumannii strain MRSN11706,tetracycline,8 +13294,Acinetobacter baumannii strain MRSN11708,tetracycline,8 +13297,Acinetobacter baumannii strain MRSN11710,tetracycline,8 +13300,Acinetobacter baumannii strain MRSN11713,tetracycline,8 +13316,Acinetobacter baumannii strain MRSN11739,tetracycline,8 +13318,Acinetobacter baumannii strain MRSN11742,tetracycline,8 +13321,Acinetobacter baumannii strain MRSN11745,tetracycline,8 +13323,Acinetobacter baumannii strain MRSN11746,tetracycline,8 +13325,Acinetobacter baumannii strain MRSN11747,tetracycline,8 +13328,Acinetobacter baumannii strain MRSN11749,tetracycline,4 +13330,Acinetobacter baumannii strain MRSN11750,tetracycline,4 +13335,Acinetobacter baumannii strain MRSN11760,tetracycline,8 +13341,Acinetobacter baumannii strain MRSN11765,tetracycline,4 +13348,Acinetobacter baumannii strain MRSN11772,tetracycline,8 +13355,Acinetobacter baumannii strain MRSN11783,tetracycline,8 +13358,Acinetobacter baumannii strain MRSN11788,tetracycline,8 +13365,Acinetobacter baumannii strain MRSN11797,tetracycline,8 +13368,Acinetobacter baumannii strain MRSN11803,tetracycline,8 +13370,Acinetobacter baumannii strain MRSN11804,tetracycline,8 +13372,Acinetobacter baumannii strain MRSN11806,tetracycline,8 +13374,Acinetobacter baumannii strain MRSN11807,tetracycline,8 +13376,Acinetobacter baumannii strain MRSN11811,tetracycline,8 +13378,Acinetobacter baumannii strain MRSN11812,tetracycline,8 +13380,Acinetobacter baumannii strain MRSN11813,tetracycline,8 +13382,Acinetobacter baumannii strain MRSN11815,tetracycline,4 +13384,Acinetobacter baumannii strain MRSN11816,tetracycline,4 +13386,Acinetobacter baumannii strain MRSN11819,tetracycline,2 +13389,Acinetobacter baumannii strain MRSN11821,tetracycline,2 +13391,Acinetobacter baumannii strain MRSN11822,tetracycline,4 +13393,Acinetobacter baumannii strain MRSN11823,tetracycline,8 +13396,Acinetobacter baumannii strain MRSN11826,tetracycline,4 +13400,Acinetobacter baumannii strain MRSN1339,tetracycline,4 +13409,Acinetobacter baumannii strain MRSN15039,tetracycline,8 +13411,Acinetobacter baumannii strain MRSN15042,tetracycline,4 +13415,Acinetobacter baumannii strain MRSN15045,tetracycline,4 +13418,Acinetobacter baumannii strain MRSN15048,tetracycline,8 +13421,Acinetobacter baumannii strain MRSN15065,tetracycline,8 +13423,Acinetobacter baumannii strain MRSN15066,tetracycline,8 +13427,Acinetobacter baumannii strain MRSN15070,tetracycline,4 +13434,Acinetobacter baumannii strain MRSN15079,tetracycline,8 +13437,Acinetobacter baumannii strain MRSN15081,tetracycline,8 +13440,Acinetobacter baumannii strain MRSN15084,tetracycline,8 +13441,Acinetobacter baumannii strain MRSN15084,tetracycline,8 +13443,Acinetobacter baumannii strain MRSN15085,tetracycline,8 +13445,Acinetobacter baumannii strain MRSN15086,tetracycline,8 +13451,Acinetobacter baumannii strain MRSN16874,tetracycline,8 +13453,Acinetobacter baumannii strain MRSN16881,tetracycline,8 +13455,Acinetobacter baumannii strain MRSN16882,tetracycline,8 +13457,Acinetobacter baumannii strain MRSN16896,tetracycline,8 +13459,Acinetobacter baumannii strain MRSN16897,tetracycline,8 +13462,Acinetobacter baumannii strain MRSN16901,tetracycline,8 +13466,Acinetobacter baumannii strain MRSN17593,tetracycline,8 +13477,Acinetobacter baumannii strain MRSN20315,tetracycline,8 +13479,Acinetobacter baumannii strain MRSN20755,tetracycline,8 +13498,Acinetobacter baumannii strain MRSN7072,tetracycline,8 +13504,Acinetobacter baumannii strain MRSN7081,tetracycline,8 +13507,Acinetobacter baumannii strain MRSN7086,tetracycline,8 +13515,Acinetobacter baumannii strain MRSN7108,tetracycline,8 +13528,Acinetobacter baumannii strain MRSN7128,tetracycline,8 +13534,Acinetobacter baumannii strain MRSN7134,tetracycline,8 +13544,Acinetobacter baumannii strain MRSN7147,tetracycline,4 +13547,Acinetobacter baumannii strain MRSN7149,tetracycline,4 +13551,Acinetobacter baumannii strain MRSN7154,tetracycline,8 +13553,Acinetobacter baumannii strain MRSN7155,tetracycline,8 +13559,Acinetobacter baumannii strain MRSN7160,tetracycline,4 +13561,Acinetobacter baumannii strain MRSN7161,tetracycline,8 +13571,Acinetobacter baumannii strain MRSN7173,tetracycline,8 +13576,Acinetobacter baumannii strain MRSN7184,tetracycline,2 +13589,Acinetobacter baumannii strain MRSN7217,tetracycline,8 +13592,Acinetobacter baumannii strain MRSN7220,tetracycline,8 +13595,Acinetobacter baumannii strain MRSN7222,tetracycline,8 +13597,Acinetobacter baumannii strain MRSN7223,tetracycline,8 +13605,Acinetobacter baumannii strain MRSN7232,tetracycline,8 +13607,Acinetobacter baumannii strain MRSN7234,tetracycline,8 +13609,Acinetobacter baumannii strain MRSN7235,tetracycline,8 +13611,Acinetobacter baumannii strain MRSN7236,tetracycline,8 +13614,Acinetobacter baumannii strain MRSN7238,tetracycline,8 +13638,Acinetobacter baumannii strain MRSN7273,tetracycline,4 +13643,Acinetobacter baumannii strain MRSN7279,tetracycline,8 +13646,Acinetobacter baumannii strain MRSN7281,tetracycline,4 +13649,Acinetobacter baumannii strain MRSN7284,tetracycline,4 +13664,Acinetobacter baumannii strain MRSN7304,tetracycline,4 +13666,Acinetobacter baumannii strain MRSN7305,tetracycline,4 +13668,Acinetobacter baumannii strain MRSN7306,tetracycline,4 +13671,Acinetobacter baumannii strain MRSN7309,tetracycline,4 +13673,Acinetobacter baumannii strain MRSN7310,tetracycline,8 +13676,Acinetobacter baumannii strain MRSN7314,tetracycline,4 +13686,Acinetobacter baumannii strain MRSN7328,tetracycline,4 +13688,Acinetobacter baumannii strain MRSN7330,tetracycline,4 +13696,Acinetobacter baumannii strain MRSN7345,tetracycline,2 +13826,Acinetobacter baumannii strain MRSN7521,tetracycline,8 +13974,Acinetobacter baumannii strain MRSN7815,tetracycline,4 +13980,Acinetobacter baumannii strain MRSN7822,tetracycline,8 +13987,Acinetobacter baumannii strain MRSN7834,tetracycline,8 +14008,Acinetobacter baumannii strain MRSN908,tetracycline,8 +14140,Acinetobacter baumannii strain MRSN15038,tigecycline,2 +14167,Acinetobacter baumannii strain MRSN15084,tigecycline,2 +14288,Acinetobacter baumannii strain MRSN10371,tobramycin,8 +14291,Acinetobacter baumannii strain MRSN11659,tobramycin,8 +14293,Acinetobacter baumannii strain MRSN11660,tobramycin,1 +14295,Acinetobacter baumannii strain MRSN11669,tobramycin,4 +14296,Acinetobacter baumannii strain MRSN11669,tobramycin,2 +14298,Acinetobacter baumannii strain MRSN11674,tobramycin,4 +14299,Acinetobacter baumannii strain MRSN11674,tobramycin,2 +14301,Acinetobacter baumannii strain MRSN11679,tobramycin,8 +14302,Acinetobacter baumannii strain MRSN11679,tobramycin,8 +14308,Acinetobacter baumannii strain MRSN11688,tobramycin,8 +14314,Acinetobacter baumannii strain MRSN11701,tobramycin,8 +14315,Acinetobacter baumannii strain MRSN11701,tobramycin,8 +14317,Acinetobacter baumannii strain MRSN11705,tobramycin,8 +14319,Acinetobacter baumannii strain MRSN11706,tobramycin,8 +14322,Acinetobacter baumannii strain MRSN11708,tobramycin,2 +14325,Acinetobacter baumannii strain MRSN11710,tobramycin,8 +14328,Acinetobacter baumannii strain MRSN11713,tobramycin,8 +14335,Acinetobacter baumannii strain MRSN11723,tobramycin,8 +14336,Acinetobacter baumannii strain MRSN11723,tobramycin,16 +14341,Acinetobacter baumannii strain MRSN11729,tobramycin,2 +14342,Acinetobacter baumannii strain MRSN11729,tobramycin,1 +14348,Acinetobacter baumannii strain MRSN11739,tobramycin,8 +14349,Acinetobacter baumannii strain MRSN11739,tobramycin,16 +14351,Acinetobacter baumannii strain MRSN11742,tobramycin,8 +14352,Acinetobacter baumannii strain MRSN11742,tobramycin,8 +14355,Acinetobacter baumannii strain MRSN11745,tobramycin,4 +14356,Acinetobacter baumannii strain MRSN11745,tobramycin,1 +14358,Acinetobacter baumannii strain MRSN11746,tobramycin,4 +14359,Acinetobacter baumannii strain MRSN11746,tobramycin,4 +14361,Acinetobacter baumannii strain MRSN11747,tobramycin,8 +14362,Acinetobacter baumannii strain MRSN11747,tobramycin,8 +14365,Acinetobacter baumannii strain MRSN11749,tobramycin,8 +14367,Acinetobacter baumannii strain MRSN11750,tobramycin,8 +14370,Acinetobacter baumannii strain MRSN11753,tobramycin,8 +14377,Acinetobacter baumannii strain MRSN11765,tobramycin,1 +14378,Acinetobacter baumannii strain MRSN11765,tobramycin,4 +14385,Acinetobacter baumannii strain MRSN11772,tobramycin,8 +14392,Acinetobacter baumannii strain MRSN11783,tobramycin,8 +14393,Acinetobacter baumannii strain MRSN11783,tobramycin,8 +14396,Acinetobacter baumannii strain MRSN11788,tobramycin,8 +14397,Acinetobacter baumannii strain MRSN11788,tobramycin,8 +14404,Acinetobacter baumannii strain MRSN11797,tobramycin,8 +14405,Acinetobacter baumannii strain MRSN11797,tobramycin,16 +14407,Acinetobacter baumannii strain MRSN11801,tobramycin,8 +14409,Acinetobacter baumannii strain MRSN11803,tobramycin,8 +14410,Acinetobacter baumannii strain MRSN11803,tobramycin,8 +14412,Acinetobacter baumannii strain MRSN11804,tobramycin,8 +14413,Acinetobacter baumannii strain MRSN11804,tobramycin,8 +14415,Acinetobacter baumannii strain MRSN11807,tobramycin,2 +14416,Acinetobacter baumannii strain MRSN11807,tobramycin,1 +14418,Acinetobacter baumannii strain MRSN11811,tobramycin,1 +14419,Acinetobacter baumannii strain MRSN11811,tobramycin,4 +14421,Acinetobacter baumannii strain MRSN11812,tobramycin,8 +14423,Acinetobacter baumannii strain MRSN11813,tobramycin,2 +14424,Acinetobacter baumannii strain MRSN11813,tobramycin,4 +14426,Acinetobacter baumannii strain MRSN11815,tobramycin,1 +14427,Acinetobacter baumannii strain MRSN11815,tobramycin,4 +14429,Acinetobacter baumannii strain MRSN11816,tobramycin,1 +14430,Acinetobacter baumannii strain MRSN11816,tobramycin,4 +14432,Acinetobacter baumannii strain MRSN11819,tobramycin,1 +14433,Acinetobacter baumannii strain MRSN11819,tobramycin,4 +14435,Acinetobacter baumannii strain MRSN11820,tobramycin,4 +14437,Acinetobacter baumannii strain MRSN11821,tobramycin,1 +14438,Acinetobacter baumannii strain MRSN11821,tobramycin,2 +14440,Acinetobacter baumannii strain MRSN11822,tobramycin,4 +14441,Acinetobacter baumannii strain MRSN11822,tobramycin,2 +14443,Acinetobacter baumannii strain MRSN11823,tobramycin,1 +14445,Acinetobacter baumannii strain MRSN11826,tobramycin,2 +14446,Acinetobacter baumannii strain MRSN11826,tobramycin,4 +14449,Acinetobacter baumannii strain MRSN1339,tobramycin,1 +14450,Acinetobacter baumannii strain MRSN1339,tobramycin,4 +14453,Acinetobacter baumannii strain MRSN1420,tobramycin,2 +14455,Acinetobacter baumannii strain MRSN1428,tobramycin,1 +14457,Acinetobacter baumannii strain MRSN1439,tobramycin,1 +14459,Acinetobacter baumannii strain MRSN1449,tobramycin,1 +14465,Acinetobacter baumannii strain MRSN15039,tobramycin,8 +14467,Acinetobacter baumannii strain MRSN15042,tobramycin,8 +14471,Acinetobacter baumannii strain MRSN15045,tobramycin,4 +14472,Acinetobacter baumannii strain MRSN15045,tobramycin,1 +14474,Acinetobacter baumannii strain MRSN15046,tobramycin,4 +14475,Acinetobacter baumannii strain MRSN15046,tobramycin,2 +14478,Acinetobacter baumannii strain MRSN15048,tobramycin,4 +14479,Acinetobacter baumannii strain MRSN15048,tobramycin,1 +14482,Acinetobacter baumannii strain MRSN15065,tobramycin,8 +14483,Acinetobacter baumannii strain MRSN15065,tobramycin,16 +14485,Acinetobacter baumannii strain MRSN15066,tobramycin,8 +14489,Acinetobacter baumannii strain MRSN15070,tobramycin,1 +14490,Acinetobacter baumannii strain MRSN15070,tobramycin,2 +14498,Acinetobacter baumannii strain MRSN15079,tobramycin,8 +14499,Acinetobacter baumannii strain MRSN15079,tobramycin,16 +14504,Acinetobacter baumannii strain MRSN15084,tobramycin,8 +14505,Acinetobacter baumannii strain MRSN15084,tobramycin,8 +14507,Acinetobacter baumannii strain MRSN15086,tobramycin,8 +14511,Acinetobacter baumannii strain MRSN1551,tobramycin,1 +14513,Acinetobacter baumannii strain MRSN1598,tobramycin,1 +14515,Acinetobacter baumannii strain MRSN16874,tobramycin,16 +14516,Acinetobacter baumannii strain MRSN16874,tobramycin,8 +14518,Acinetobacter baumannii strain MRSN16881,tobramycin,4 +14522,Acinetobacter baumannii strain MRSN16897,tobramycin,4 +14524,Acinetobacter baumannii strain MRSN16898,tobramycin,1 +14525,Acinetobacter baumannii strain MRSN16898,tobramycin,4 +14527,Acinetobacter baumannii strain MRSN16901,tobramycin,4 +14530,Acinetobacter baumannii strain MRSN17592,tobramycin,1 +14532,Acinetobacter baumannii strain MRSN17593,tobramycin,4 +14533,Acinetobacter baumannii strain MRSN17593,tobramycin,2 +14535,Acinetobacter baumannii strain MRSN1967,tobramycin,16 +14540,Acinetobacter baumannii strain MRSN1987,tobramycin,8 +14543,Acinetobacter baumannii strain MRSN1992,tobramycin,8 +14545,Acinetobacter baumannii strain MRSN1998,tobramycin,8 +14547,Acinetobacter baumannii strain MRSN2009,tobramycin,1 +14550,Acinetobacter baumannii strain MRSN2024,tobramycin,16 +14552,Acinetobacter baumannii strain MRSN20315,tobramycin,8 +14554,Acinetobacter baumannii strain MRSN20755,tobramycin,8 +14555,Acinetobacter baumannii strain MRSN20755,tobramycin,8 +14557,Acinetobacter baumannii strain MRSN2427,tobramycin,16 +14558,Acinetobacter baumannii strain MRSN2427,tobramycin,8 +14560,Acinetobacter baumannii strain MRSN2441,tobramycin,8 +14561,Acinetobacter baumannii strain MRSN2441,tobramycin,16 +14563,Acinetobacter baumannii strain MRSN2821,tobramycin,1 +14564,Acinetobacter baumannii strain MRSN2821,tobramycin,2 +14566,Acinetobacter baumannii strain MRSN2830,tobramycin,2 +14567,Acinetobacter baumannii strain MRSN2830,tobramycin,1 +14569,Acinetobacter baumannii strain MRSN2839,tobramycin,8 +14571,Acinetobacter baumannii strain MRSN2840,tobramycin,8 +14573,Acinetobacter baumannii strain MRSN3360,tobramycin,1 +14576,Acinetobacter baumannii strain MRSN3607,tobramycin,1 +14578,Acinetobacter baumannii strain MRSN3843,tobramycin,2 +14581,Acinetobacter baumannii strain MRSN3941,tobramycin,8 +14583,Acinetobacter baumannii strain MRSN4119,tobramycin,8 +14584,Acinetobacter baumannii strain MRSN4119,tobramycin,16 +14586,Acinetobacter baumannii strain MRSN4481,tobramycin,2 +14588,Acinetobacter baumannii strain MRSN5540,tobramycin,8 +14590,Acinetobacter baumannii strain MRSN6269,tobramycin,8 +14591,Acinetobacter baumannii strain MRSN6269,tobramycin,16 +14593,Acinetobacter baumannii strain MRSN6273,tobramycin,8 +14596,Acinetobacter baumannii strain MRSN7069,tobramycin,2 +14597,Acinetobacter baumannii strain MRSN7069,tobramycin,1 +14600,Acinetobacter baumannii strain MRSN7072,tobramycin,8 +14606,Acinetobacter baumannii strain MRSN7081,tobramycin,8 +14609,Acinetobacter baumannii strain MRSN7086,tobramycin,8 +14610,Acinetobacter baumannii strain MRSN7086,tobramycin,8 +14617,Acinetobacter baumannii strain MRSN7108,tobramycin,1 +14618,Acinetobacter baumannii strain MRSN7108,tobramycin,2 +14631,Acinetobacter baumannii strain MRSN7128,tobramycin,8 +14632,Acinetobacter baumannii strain MRSN7128,tobramycin,16 +14638,Acinetobacter baumannii strain MRSN7134,tobramycin,8 +14639,Acinetobacter baumannii strain MRSN7134,tobramycin,8 +14652,Acinetobacter baumannii strain MRSN7155,tobramycin,8 +14658,Acinetobacter baumannii strain MRSN7161,tobramycin,8 +14659,Acinetobacter baumannii strain MRSN7161,tobramycin,16 +14670,Acinetobacter baumannii strain MRSN7173,tobramycin,8 +14671,Acinetobacter baumannii strain MRSN7173,tobramycin,8 +14676,Acinetobacter baumannii strain MRSN7184,tobramycin,8 +14682,Acinetobacter baumannii strain MRSN7204,tobramycin,8 +14692,Acinetobacter baumannii strain MRSN7220,tobramycin,8 +14701,Acinetobacter baumannii strain MRSN7232,tobramycin,1 +14703,Acinetobacter baumannii strain MRSN7235,tobramycin,4 +14704,Acinetobacter baumannii strain MRSN7235,tobramycin,1 +14706,Acinetobacter baumannii strain MRSN7236,tobramycin,1 +14707,Acinetobacter baumannii strain MRSN7236,tobramycin,4 +14710,Acinetobacter baumannii strain MRSN7238,tobramycin,1 +14711,Acinetobacter baumannii strain MRSN7238,tobramycin,1 +14738,Acinetobacter baumannii strain MRSN7279,tobramycin,8 +14739,Acinetobacter baumannii strain MRSN7279,tobramycin,8 +14756,Acinetobacter baumannii strain MRSN7310,tobramycin,1 +14757,Acinetobacter baumannii strain MRSN7310,tobramycin,4 +14766,Acinetobacter baumannii strain MRSN7330,tobramycin,8 +14772,Acinetobacter baumannii strain MRSN7345,tobramycin,4 +14773,Acinetobacter baumannii strain MRSN7345,tobramycin,1 +14776,Acinetobacter baumannii strain MRSN7347,tobramycin,1 +14777,Acinetobacter baumannii strain MRSN7347,tobramycin,1 +14780,Acinetobacter baumannii strain MRSN7349,tobramycin,2 +14781,Acinetobacter baumannii strain MRSN7349,tobramycin,1 +14790,Acinetobacter baumannii strain MRSN7365,tobramycin,8 +14791,Acinetobacter baumannii strain MRSN7365,tobramycin,8 +14795,Acinetobacter baumannii strain MRSN7370,tobramycin,8 +14798,Acinetobacter baumannii strain MRSN7378,tobramycin,8 +14804,Acinetobacter baumannii strain MRSN7389,tobramycin,16 +14805,Acinetobacter baumannii strain MRSN7389,tobramycin,8 +14810,Acinetobacter baumannii strain MRSN7404,tobramycin,8 +14812,Acinetobacter baumannii strain MRSN7405,tobramycin,1 +14816,Acinetobacter baumannii strain MRSN7411,tobramycin,1 +14817,Acinetobacter baumannii strain MRSN7411,tobramycin,1 +14821,Acinetobacter baumannii strain MRSN7417,tobramycin,2 +14822,Acinetobacter baumannii strain MRSN7417,tobramycin,1 +14824,Acinetobacter baumannii strain MRSN7419,tobramycin,8 +14831,Acinetobacter baumannii strain MRSN7438,tobramycin,1 +14832,Acinetobacter baumannii strain MRSN7438,tobramycin,1 +14835,Acinetobacter baumannii strain MRSN7441,tobramycin,8 +14838,Acinetobacter baumannii strain MRSN7447,tobramycin,8 +14839,Acinetobacter baumannii strain MRSN7447,tobramycin,16 +14841,Acinetobacter baumannii strain MRSN7448,tobramycin,8 +14842,Acinetobacter baumannii strain MRSN7448,tobramycin,8 +14845,Acinetobacter baumannii strain MRSN7460,tobramycin,1 +14846,Acinetobacter baumannii strain MRSN7460,tobramycin,1 +14850,Acinetobacter baumannii strain MRSN7468,tobramycin,1 +14851,Acinetobacter baumannii strain MRSN7468,tobramycin,1 +14856,Acinetobacter baumannii strain MRSN7474,tobramycin,2 +14857,Acinetobacter baumannii strain MRSN7474,tobramycin,1 +14859,Acinetobacter baumannii strain MRSN7475,tobramycin,1 +14860,Acinetobacter baumannii strain MRSN7475,tobramycin,1 +14863,Acinetobacter baumannii strain MRSN7478,tobramycin,2 +14864,Acinetobacter baumannii strain MRSN7478,tobramycin,1 +14876,Acinetobacter baumannii strain MRSN7497,tobramycin,2 +14877,Acinetobacter baumannii strain MRSN7497,tobramycin,1 +14891,Acinetobacter baumannii strain MRSN7521,tobramycin,8 +14915,Acinetobacter baumannii strain MRSN7570,tobramycin,8 +14916,Acinetobacter baumannii strain MRSN7570,tobramycin,8 +14944,Acinetobacter baumannii strain MRSN7629,tobramycin,1 +14945,Acinetobacter baumannii strain MRSN7629,tobramycin,2 +14958,Acinetobacter baumannii strain MRSN7655,tobramycin,1 +14959,Acinetobacter baumannii strain MRSN7655,tobramycin,1 +14966,Acinetobacter baumannii strain MRSN7668,tobramycin,2 +14967,Acinetobacter baumannii strain MRSN7668,tobramycin,2 +14991,Acinetobacter baumannii strain MRSN7706,tobramycin,1 +14992,Acinetobacter baumannii strain MRSN7706,tobramycin,1 +14994,Acinetobacter baumannii strain MRSN7707,tobramycin,2 +14995,Acinetobacter baumannii strain MRSN7707,tobramycin,1 +15005,Acinetobacter baumannii strain MRSN7718,tobramycin,1 +15006,Acinetobacter baumannii strain MRSN7718,tobramycin,2 +15014,Acinetobacter baumannii strain MRSN7730,tobramycin,8 +15015,Acinetobacter baumannii strain MRSN7730,tobramycin,8 +15031,Acinetobacter baumannii strain MRSN7776,tobramycin,8 +15032,Acinetobacter baumannii strain MRSN7776,tobramycin,16 +15054,Acinetobacter baumannii strain MRSN7822,tobramycin,4 +15055,Acinetobacter baumannii strain MRSN7822,tobramycin,1 +15062,Acinetobacter baumannii strain MRSN83,tobramycin,8 +15068,Acinetobacter baumannii strain MRSN888,tobramycin,1 +15071,Acinetobacter baumannii strain MRSN8899,tobramycin,8 +15072,Acinetobacter baumannii strain MRSN8899,tobramycin,16 +15074,Acinetobacter baumannii strain MRSN89,tobramycin,8 +15076,Acinetobacter baumannii strain MRSN890,tobramycin,16 +15078,Acinetobacter baumannii strain MRSN8900,tobramycin,8 +15079,Acinetobacter baumannii strain MRSN8900,tobramycin,16 +15081,Acinetobacter baumannii strain MRSN8901,tobramycin,2 +15082,Acinetobacter baumannii strain MRSN8901,tobramycin,2 +15084,Acinetobacter baumannii strain MRSN8902,tobramycin,16 +15085,Acinetobacter baumannii strain MRSN8902,tobramycin,8 +15087,Acinetobacter baumannii strain MRSN8903,tobramycin,8 +15092,Acinetobacter baumannii strain MRSN908,tobramycin,8 +15093,Acinetobacter baumannii strain MRSN908,tobramycin,16 +15095,Acinetobacter baumannii strain MRSN909,tobramycin,2 +15097,Acinetobacter baumannii strain MRSN910,tobramycin,8 +15099,Acinetobacter baumannii strain MRSN915,tobramycin,1 +15101,Acinetobacter baumannii strain MRSN916,tobramycin,16 +15103,Acinetobacter baumannii strain MRSN917,tobramycin,16 +15105,Acinetobacter baumannii strain MRSN919,tobramycin,8 +15107,Acinetobacter baumannii strain MRSN920,tobramycin,16 +15109,Acinetobacter baumannii strain MRSN921,tobramycin,8 +15112,Acinetobacter baumannii strain MRSN926,tobramycin,16 +15114,Acinetobacter baumannii strain MRSN927,tobramycin,8 +15116,Acinetobacter baumannii strain MRSN929,tobramycin,4 +15118,Acinetobacter baumannii strain MRSN939,tobramycin,8 +15120,Acinetobacter baumannii strain MRSN953,tobramycin,1 +15122,Acinetobacter baumannii strain MRSN966,tobramycin,1 +15181,Acinetobacter baumannii strain MRSN10371,trimethoprim/sulfamethoxazole, 16/304 +15184,Acinetobacter baumannii strain MRSN11653,trimethoprim/sulfamethoxazole, 16/304 +15186,Acinetobacter baumannii strain MRSN11659,trimethoprim/sulfamethoxazole, 2/38 +15188,Acinetobacter baumannii strain MRSN11660,trimethoprim/sulfamethoxazole, 2/38 +15190,Acinetobacter baumannii strain MRSN11669,trimethoprim/sulfamethoxazole, 2/38 +15192,Acinetobacter baumannii strain MRSN11674,trimethoprim/sulfamethoxazole, 16/304 +15194,Acinetobacter baumannii strain MRSN11675,trimethoprim/sulfamethoxazole, 16/304 +15196,Acinetobacter baumannii strain MRSN11679,trimethoprim/sulfamethoxazole, 2/38 +15202,Acinetobacter baumannii strain MRSN11688,trimethoprim/sulfamethoxazole, 2/38 +15208,Acinetobacter baumannii strain MRSN11701,trimethoprim/sulfamethoxazole, 2/38 +15210,Acinetobacter baumannii strain MRSN11705,trimethoprim/sulfamethoxazole, 2/38 +15212,Acinetobacter baumannii strain MRSN11706,trimethoprim/sulfamethoxazole, 16/304 +15215,Acinetobacter baumannii strain MRSN11708,trimethoprim/sulfamethoxazole, 16/304 +15218,Acinetobacter baumannii strain MRSN11710,trimethoprim/sulfamethoxazole, 16/304 +15221,Acinetobacter baumannii strain MRSN11713,trimethoprim/sulfamethoxazole, 2/38 +15228,Acinetobacter baumannii strain MRSN11723,trimethoprim/sulfamethoxazole, 2/38 +15233,Acinetobacter baumannii strain MRSN11729,trimethoprim/sulfamethoxazole, 2/38 +15239,Acinetobacter baumannii strain MRSN11739,trimethoprim/sulfamethoxazole, 16/304 +15241,Acinetobacter baumannii strain MRSN11742,trimethoprim/sulfamethoxazole, 2/38 +15244,Acinetobacter baumannii strain MRSN11745,trimethoprim/sulfamethoxazole, 16/304 +15246,Acinetobacter baumannii strain MRSN11746,trimethoprim/sulfamethoxazole, 2/38 +15248,Acinetobacter baumannii strain MRSN11747,trimethoprim/sulfamethoxazole, 16/304 +15251,Acinetobacter baumannii strain MRSN11749,trimethoprim/sulfamethoxazole, 16/304 +15253,Acinetobacter baumannii strain MRSN11750,trimethoprim/sulfamethoxazole, 2/38 +15256,Acinetobacter baumannii strain MRSN11753,trimethoprim/sulfamethoxazole, 16/304 +15260,Acinetobacter baumannii strain MRSN11760,trimethoprim/sulfamethoxazole, 4/76 +15266,Acinetobacter baumannii strain MRSN11765,trimethoprim/sulfamethoxazole, 2/38 +15273,Acinetobacter baumannii strain MRSN11772,trimethoprim/sulfamethoxazole, 16/304 +15275,Acinetobacter baumannii strain MRSN11774,trimethoprim/sulfamethoxazole, 2/38 +15282,Acinetobacter baumannii strain MRSN11783,trimethoprim/sulfamethoxazole, 2/38 +15285,Acinetobacter baumannii strain MRSN11788,trimethoprim/sulfamethoxazole, 8/152 +15292,Acinetobacter baumannii strain MRSN11797,trimethoprim/sulfamethoxazole, 16/304 +15294,Acinetobacter baumannii strain MRSN11801,trimethoprim/sulfamethoxazole, 2/38 +15296,Acinetobacter baumannii strain MRSN11803,trimethoprim/sulfamethoxazole, 2/38 +15298,Acinetobacter baumannii strain MRSN11804,trimethoprim/sulfamethoxazole, 4/76 +15300,Acinetobacter baumannii strain MRSN11812,trimethoprim/sulfamethoxazole, 2/38 +15302,Acinetobacter baumannii strain MRSN11815,trimethoprim/sulfamethoxazole, 1/19 +15304,Acinetobacter baumannii strain MRSN11816,trimethoprim/sulfamethoxazole, 1/19 +15306,Acinetobacter baumannii strain MRSN11819,trimethoprim/sulfamethoxazole, 2/38 +15308,Acinetobacter baumannii strain MRSN11820,trimethoprim/sulfamethoxazole, 2/38 +15310,Acinetobacter baumannii strain MRSN11821,trimethoprim/sulfamethoxazole, 2/38 +15312,Acinetobacter baumannii strain MRSN11822,trimethoprim/sulfamethoxazole, 1/19 +15314,Acinetobacter baumannii strain MRSN11825,trimethoprim/sulfamethoxazole, 16/304 +15316,Acinetobacter baumannii strain MRSN11826,trimethoprim/sulfamethoxazole, 2/38 +15320,Acinetobacter baumannii strain MRSN1339,trimethoprim/sulfamethoxazole, 1/19 +15330,Acinetobacter baumannii strain MRSN15038,trimethoprim/sulfamethoxazole, 16/304 +15332,Acinetobacter baumannii strain MRSN15039,trimethoprim/sulfamethoxazole, 2/38 +15334,Acinetobacter baumannii strain MRSN15042,trimethoprim/sulfamethoxazole, 16/304 +15338,Acinetobacter baumannii strain MRSN15045,trimethoprim/sulfamethoxazole, 2/38 +15340,Acinetobacter baumannii strain MRSN15046,trimethoprim/sulfamethoxazole, 1/19 +15343,Acinetobacter baumannii strain MRSN15048,trimethoprim/sulfamethoxazole, 2/38 +15346,Acinetobacter baumannii strain MRSN15065,trimethoprim/sulfamethoxazole, 2/38 +15348,Acinetobacter baumannii strain MRSN15066,trimethoprim/sulfamethoxazole, 2/38 +15352,Acinetobacter baumannii strain MRSN15070,trimethoprim/sulfamethoxazole, 2/38 +15360,Acinetobacter baumannii strain MRSN15079,trimethoprim/sulfamethoxazole, 2/38 +15363,Acinetobacter baumannii strain MRSN15081,trimethoprim/sulfamethoxazole, 2/38 +15367,Acinetobacter baumannii strain MRSN15084,trimethoprim/sulfamethoxazole, 16/304 +15368,Acinetobacter baumannii strain MRSN15084,trimethoprim/sulfamethoxazole, 2/38 +15370,Acinetobacter baumannii strain MRSN15085,trimethoprim/sulfamethoxazole, 2/38 +15372,Acinetobacter baumannii strain MRSN15086,trimethoprim/sulfamethoxazole, 2/38 +15378,Acinetobacter baumannii strain MRSN16874,trimethoprim/sulfamethoxazole, 2/38 +15380,Acinetobacter baumannii strain MRSN16881,trimethoprim/sulfamethoxazole, 2/38 +15382,Acinetobacter baumannii strain MRSN16882,trimethoprim/sulfamethoxazole, 2/38 +15384,Acinetobacter baumannii strain MRSN16896,trimethoprim/sulfamethoxazole, 2/38 +15386,Acinetobacter baumannii strain MRSN16897,trimethoprim/sulfamethoxazole, 16/304 +15388,Acinetobacter baumannii strain MRSN16898,trimethoprim/sulfamethoxazole, 16/304 +15390,Acinetobacter baumannii strain MRSN16901,trimethoprim/sulfamethoxazole, 16/304 +15393,Acinetobacter baumannii strain MRSN17592,trimethoprim/sulfamethoxazole, 16/304 +15395,Acinetobacter baumannii strain MRSN17593,trimethoprim/sulfamethoxazole, 16/304 +15408,Acinetobacter baumannii strain MRSN20315,trimethoprim/sulfamethoxazole, 2/38 +15410,Acinetobacter baumannii strain MRSN20755,trimethoprim/sulfamethoxazole, 2/38 +15412,Acinetobacter baumannii strain MRSN2427,trimethoprim/sulfamethoxazole, 16/304 +15414,Acinetobacter baumannii strain MRSN2821,trimethoprim/sulfamethoxazole, 1/19 +15416,Acinetobacter baumannii strain MRSN2830,trimethoprim/sulfamethoxazole, 1/19 +15418,Acinetobacter baumannii strain MRSN2839,trimethoprim/sulfamethoxazole, 2/38 +15420,Acinetobacter baumannii strain MRSN2840,trimethoprim/sulfamethoxazole, 2/38 +15427,Acinetobacter baumannii strain MRSN3941,trimethoprim/sulfamethoxazole, 2/38 +15429,Acinetobacter baumannii strain MRSN4119,trimethoprim/sulfamethoxazole, 2/38 +15432,Acinetobacter baumannii strain MRSN5540,trimethoprim/sulfamethoxazole, 2/38 +15434,Acinetobacter baumannii strain MRSN6269,trimethoprim/sulfamethoxazole, 2/38 +15436,Acinetobacter baumannii strain MRSN6273,trimethoprim/sulfamethoxazole, 16/304 +15439,Acinetobacter baumannii strain MRSN7069,trimethoprim/sulfamethoxazole, 2/38 +15442,Acinetobacter baumannii strain MRSN7072,trimethoprim/sulfamethoxazole, 2/38 +15448,Acinetobacter baumannii strain MRSN7081,trimethoprim/sulfamethoxazole, 16/304 +15451,Acinetobacter baumannii strain MRSN7086,trimethoprim/sulfamethoxazole, 2/38 +15459,Acinetobacter baumannii strain MRSN7108,trimethoprim/sulfamethoxazole, 2/38 +15472,Acinetobacter baumannii strain MRSN7128,trimethoprim/sulfamethoxazole, 2/38 +15478,Acinetobacter baumannii strain MRSN7134,trimethoprim/sulfamethoxazole, 2/38 +15488,Acinetobacter baumannii strain MRSN7147,trimethoprim/sulfamethoxazole, 16/304 +15491,Acinetobacter baumannii strain MRSN7149,trimethoprim/sulfamethoxazole, 2/38 +15495,Acinetobacter baumannii strain MRSN7154,trimethoprim/sulfamethoxazole, 16/304 +15497,Acinetobacter baumannii strain MRSN7155,trimethoprim/sulfamethoxazole, 4/76 +15503,Acinetobacter baumannii strain MRSN7160,trimethoprim/sulfamethoxazole, 16/304 +15505,Acinetobacter baumannii strain MRSN7161,trimethoprim/sulfamethoxazole, 8/152 +15514,Acinetobacter baumannii strain MRSN7170,trimethoprim/sulfamethoxazole, 16/304 +15518,Acinetobacter baumannii strain MRSN7173,trimethoprim/sulfamethoxazole, 2/38 +15523,Acinetobacter baumannii strain MRSN7184,trimethoprim/sulfamethoxazole, 2/38 +15529,Acinetobacter baumannii strain MRSN7204,trimethoprim/sulfamethoxazole, 16/304 +15538,Acinetobacter baumannii strain MRSN7217,trimethoprim/sulfamethoxazole, 2/38 +15541,Acinetobacter baumannii strain MRSN7220,trimethoprim/sulfamethoxazole, 2/38 +15544,Acinetobacter baumannii strain MRSN7222,trimethoprim/sulfamethoxazole, 16/304 +15546,Acinetobacter baumannii strain MRSN7223,trimethoprim/sulfamethoxazole, 2/38 +15554,Acinetobacter baumannii strain MRSN7232,trimethoprim/sulfamethoxazole, 2/38 +15556,Acinetobacter baumannii strain MRSN7234,trimethoprim/sulfamethoxazole, 2/38 +15558,Acinetobacter baumannii strain MRSN7235,trimethoprim/sulfamethoxazole, 16/304 +15560,Acinetobacter baumannii strain MRSN7236,trimethoprim/sulfamethoxazole, 16/304 +15563,Acinetobacter baumannii strain MRSN7238,trimethoprim/sulfamethoxazole, 16/304 +15579,Acinetobacter baumannii strain MRSN7257,trimethoprim/sulfamethoxazole, 2/38 +15590,Acinetobacter baumannii strain MRSN7273,trimethoprim/sulfamethoxazole, 2/38 +15595,Acinetobacter baumannii strain MRSN7279,trimethoprim/sulfamethoxazole, 16/304 +15598,Acinetobacter baumannii strain MRSN7281,trimethoprim/sulfamethoxazole, 2/38 +15601,Acinetobacter baumannii strain MRSN7284,trimethoprim/sulfamethoxazole, 2/38 +15617,Acinetobacter baumannii strain MRSN7304,trimethoprim/sulfamethoxazole, 2/38 +15619,Acinetobacter baumannii strain MRSN7305,trimethoprim/sulfamethoxazole, 2/38 +15621,Acinetobacter baumannii strain MRSN7306,trimethoprim/sulfamethoxazole, 2/38 +15624,Acinetobacter baumannii strain MRSN7309,trimethoprim/sulfamethoxazole, 2/38 +15626,Acinetobacter baumannii strain MRSN7310,trimethoprim/sulfamethoxazole, 2/38 +15629,Acinetobacter baumannii strain MRSN7314,trimethoprim/sulfamethoxazole, 2/38 +15636,Acinetobacter baumannii strain MRSN7324,trimethoprim/sulfamethoxazole, 2/38 +15641,Acinetobacter baumannii strain MRSN7328,trimethoprim/sulfamethoxazole, 16/304 +15643,Acinetobacter baumannii strain MRSN7330,trimethoprim/sulfamethoxazole, 2/38 +15650,Acinetobacter baumannii strain MRSN7344,trimethoprim/sulfamethoxazole, 2/38 +15652,Acinetobacter baumannii strain MRSN7345,trimethoprim/sulfamethoxazole, 1/19 +15655,Acinetobacter baumannii strain MRSN7347,trimethoprim/sulfamethoxazole, 2/38 +15658,Acinetobacter baumannii strain MRSN7349,trimethoprim/sulfamethoxazole, 16/304 +15660,Acinetobacter baumannii strain MRSN7350,trimethoprim/sulfamethoxazole, 16/304 +15665,Acinetobacter baumannii strain MRSN7354,trimethoprim/sulfamethoxazole, 2/38 +15667,Acinetobacter baumannii strain MRSN7355,trimethoprim/sulfamethoxazole, 2/38 +15670,Acinetobacter baumannii strain MRSN7357,trimethoprim/sulfamethoxazole, 2/38 +15672,Acinetobacter baumannii strain MRSN7359,trimethoprim/sulfamethoxazole, 16/304 +15675,Acinetobacter baumannii strain MRSN7361,trimethoprim/sulfamethoxazole, 16/304 +15678,Acinetobacter baumannii strain MRSN7363,trimethoprim/sulfamethoxazole, 2/38 +15681,Acinetobacter baumannii strain MRSN7365,trimethoprim/sulfamethoxazole, 16/304 +15683,Acinetobacter baumannii strain MRSN7366,trimethoprim/sulfamethoxazole, 16/304 +15687,Acinetobacter baumannii strain MRSN7370,trimethoprim/sulfamethoxazole, 2/38 +15689,Acinetobacter baumannii strain MRSN7372,trimethoprim/sulfamethoxazole, 2/38 +15691,Acinetobacter baumannii strain MRSN7373,trimethoprim/sulfamethoxazole, 2/38 +15693,Acinetobacter baumannii strain MRSN7375,trimethoprim/sulfamethoxazole, 2/38 +15696,Acinetobacter baumannii strain MRSN7377,trimethoprim/sulfamethoxazole, 16/304 +15698,Acinetobacter baumannii strain MRSN7378,trimethoprim/sulfamethoxazole, 16/304 +15700,Acinetobacter baumannii strain MRSN7379,trimethoprim/sulfamethoxazole, 2/38 +15702,Acinetobacter baumannii strain MRSN7380,trimethoprim/sulfamethoxazole, 2/38 +15708,Acinetobacter baumannii strain MRSN7386,trimethoprim/sulfamethoxazole, 2/38 +15710,Acinetobacter baumannii strain MRSN7387,trimethoprim/sulfamethoxazole, 2/38 +15712,Acinetobacter baumannii strain MRSN7388,trimethoprim/sulfamethoxazole, 16/304 +15714,Acinetobacter baumannii strain MRSN7389,trimethoprim/sulfamethoxazole, 16/304 +15716,Acinetobacter baumannii strain MRSN7390,trimethoprim/sulfamethoxazole, 2/38 +15718,Acinetobacter baumannii strain MRSN7391,trimethoprim/sulfamethoxazole, 16/304 +15720,Acinetobacter baumannii strain MRSN7392,trimethoprim/sulfamethoxazole, 16/304 +15723,Acinetobacter baumannii strain MRSN7394,trimethoprim/sulfamethoxazole, 16/304 +15727,Acinetobacter baumannii strain MRSN7401,trimethoprim/sulfamethoxazole, 16/304 +15729,Acinetobacter baumannii strain MRSN7402,trimethoprim/sulfamethoxazole, 16/304 +15731,Acinetobacter baumannii strain MRSN7403,trimethoprim/sulfamethoxazole, 16/304 +15733,Acinetobacter baumannii strain MRSN7404,trimethoprim/sulfamethoxazole, 16/304 +15735,Acinetobacter baumannii strain MRSN7405,trimethoprim/sulfamethoxazole, 8/152 +15738,Acinetobacter baumannii strain MRSN7407,trimethoprim/sulfamethoxazole, 2/38 +15740,Acinetobacter baumannii strain MRSN7408,trimethoprim/sulfamethoxazole, 16/304 +15742,Acinetobacter baumannii strain MRSN7409,trimethoprim/sulfamethoxazole, 2/38 +15745,Acinetobacter baumannii strain MRSN7411,trimethoprim/sulfamethoxazole, 16/304 +15748,Acinetobacter baumannii strain MRSN7413,trimethoprim/sulfamethoxazole, 2/38 +15750,Acinetobacter baumannii strain MRSN7414,trimethoprim/sulfamethoxazole, 16/304 +15753,Acinetobacter baumannii strain MRSN7416,trimethoprim/sulfamethoxazole, 2/38 +15755,Acinetobacter baumannii strain MRSN7417,trimethoprim/sulfamethoxazole, 2/38 +15757,Acinetobacter baumannii strain MRSN7418,trimethoprim/sulfamethoxazole, 2/38 +15759,Acinetobacter baumannii strain MRSN7419,trimethoprim/sulfamethoxazole, 2/38 +15762,Acinetobacter baumannii strain MRSN7421,trimethoprim/sulfamethoxazole, 16/304 +15764,Acinetobacter baumannii strain MRSN7423,trimethoprim/sulfamethoxazole, 16/304 +15770,Acinetobacter baumannii strain MRSN7438,trimethoprim/sulfamethoxazole, 16/304 +15773,Acinetobacter baumannii strain MRSN7441,trimethoprim/sulfamethoxazole, 2/38 +15776,Acinetobacter baumannii strain MRSN7447,trimethoprim/sulfamethoxazole, 8/152 +15778,Acinetobacter baumannii strain MRSN7448,trimethoprim/sulfamethoxazole, 4/76 +15780,Acinetobacter baumannii strain MRSN7454,trimethoprim/sulfamethoxazole, 16/304 +15782,Acinetobacter baumannii strain MRSN7455,trimethoprim/sulfamethoxazole, 2/38 +15785,Acinetobacter baumannii strain MRSN7457,trimethoprim/sulfamethoxazole, 16/304 +15788,Acinetobacter baumannii strain MRSN7459,trimethoprim/sulfamethoxazole, 2/38 +15790,Acinetobacter baumannii strain MRSN7460,trimethoprim/sulfamethoxazole, 2/38 +15792,Acinetobacter baumannii strain MRSN7461,trimethoprim/sulfamethoxazole, 16/304 +15794,Acinetobacter baumannii strain MRSN7462,trimethoprim/sulfamethoxazole, 2/38 +15798,Acinetobacter baumannii strain MRSN7467,trimethoprim/sulfamethoxazole, 2/38 +15800,Acinetobacter baumannii strain MRSN7468,trimethoprim/sulfamethoxazole, 2/38 +15802,Acinetobacter baumannii strain MRSN7469,trimethoprim/sulfamethoxazole, 2/38 +15807,Acinetobacter baumannii strain MRSN7474,trimethoprim/sulfamethoxazole, 2/38 +15809,Acinetobacter baumannii strain MRSN7475,trimethoprim/sulfamethoxazole, 2/38 +15812,Acinetobacter baumannii strain MRSN7478,trimethoprim/sulfamethoxazole, 16/304 +15815,Acinetobacter baumannii strain MRSN7481,trimethoprim/sulfamethoxazole, 16/304 +15820,Acinetobacter baumannii strain MRSN7485,trimethoprim/sulfamethoxazole, 16/304 +15829,Acinetobacter baumannii strain MRSN7497,trimethoprim/sulfamethoxazole, 2/38 +15831,Acinetobacter baumannii strain MRSN7498,trimethoprim/sulfamethoxazole, 2/38 +15848,Acinetobacter baumannii strain MRSN7521,trimethoprim/sulfamethoxazole, 2/38 +15866,Acinetobacter baumannii strain MRSN7557,trimethoprim/sulfamethoxazole, 2/38 +15869,Acinetobacter baumannii strain MRSN7560,trimethoprim/sulfamethoxazole, 2/38 +15878,Acinetobacter baumannii strain MRSN7570,trimethoprim/sulfamethoxazole, 2/38 +15883,Acinetobacter baumannii strain MRSN7578,trimethoprim/sulfamethoxazole, 2/38 +15887,Acinetobacter baumannii strain MRSN7582,trimethoprim/sulfamethoxazole, 2/38 +15898,Acinetobacter baumannii strain MRSN7599,trimethoprim/sulfamethoxazole, 2/38 +15902,Acinetobacter baumannii strain MRSN7605,trimethoprim/sulfamethoxazole, 16/304 +15908,Acinetobacter baumannii strain MRSN7617,trimethoprim/sulfamethoxazole, 8/152 +15915,Acinetobacter baumannii strain MRSN7629,trimethoprim/sulfamethoxazole, 16/304 +15918,Acinetobacter baumannii strain MRSN7636,trimethoprim/sulfamethoxazole, 16/304 +15922,Acinetobacter baumannii strain MRSN7640,trimethoprim/sulfamethoxazole, 2/38 +15933,Acinetobacter baumannii strain MRSN7655,trimethoprim/sulfamethoxazole, 1/19 +15938,Acinetobacter baumannii strain MRSN7660,trimethoprim/sulfamethoxazole, 2/38 +15942,Acinetobacter baumannii strain MRSN7668,trimethoprim/sulfamethoxazole, 16/304 +15945,Acinetobacter baumannii strain MRSN7670,trimethoprim/sulfamethoxazole, 16/304 +15953,Acinetobacter baumannii strain MRSN7677,trimethoprim/sulfamethoxazole, 2/38 +15970,Acinetobacter baumannii strain MRSN7706,trimethoprim/sulfamethoxazole, 2/38 +15972,Acinetobacter baumannii strain MRSN7707,trimethoprim/sulfamethoxazole, 16/304 +15982,Acinetobacter baumannii strain MRSN7718,trimethoprim/sulfamethoxazole, 2/38 +15990,Acinetobacter baumannii strain MRSN7730,trimethoprim/sulfamethoxazole, 16/304 +15998,Acinetobacter baumannii strain MRSN7751,trimethoprim/sulfamethoxazole, 2/38 +16009,Acinetobacter baumannii strain MRSN7776,trimethoprim/sulfamethoxazole, 2/38 +16016,Acinetobacter baumannii strain MRSN7790,trimethoprim/sulfamethoxazole, 2/38 +16029,Acinetobacter baumannii strain MRSN7815,trimethoprim/sulfamethoxazole, 16/304 +16036,Acinetobacter baumannii strain MRSN7822,trimethoprim/sulfamethoxazole, 16/304 +16043,Acinetobacter baumannii strain MRSN7834,trimethoprim/sulfamethoxazole, 2/38 +16045,Acinetobacter baumannii strain MRSN83,trimethoprim/sulfamethoxazole, 2/38 +16047,Acinetobacter baumannii strain MRSN85,trimethoprim/sulfamethoxazole, 16/304 +16055,Acinetobacter baumannii strain MRSN8899,trimethoprim/sulfamethoxazole, 2/38 +16058,Acinetobacter baumannii strain MRSN8900,trimethoprim/sulfamethoxazole, 2/38 +16060,Acinetobacter baumannii strain MRSN8901,trimethoprim/sulfamethoxazole, 16/304 +16062,Acinetobacter baumannii strain MRSN8903,trimethoprim/sulfamethoxazole, 16/304 +16068,Acinetobacter baumannii strain MRSN908,trimethoprim/sulfamethoxazole, 8/152
--- a/test-data/output.csv Tue Jun 29 05:20:41 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,10 +0,0 @@ -Strain name,Resistance_phenotype,Imipenem,Meropenem,Ciprofloxacin,Piperacillin/tazobactam,Ticarcillin/clavulanicacid,Ceftriaxone,Ceftazidime,Cefepime,Trimethoprim/sulfamethoxazole,Ampicillin/sulbactam,Colistin,Polymyxinb -Acinetobacter baumannii A85,,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Susceptible,NA -Acinetobacter baumannii AB307-0294,,Susceptible,Susceptible,NA,Strain could not classified,NA,Intermediate,NA,Susceptible,NA,Strain could not classified,NA,NA -Acinetobacter baumannii AB5075-UW,,NA,NA,Resistant,NA,NA,NA,Resistant,Resistant,NA,NA,NA,NA -Acinetobacter baumannii DU202,,NA,NA,NA,Strain could not classified,Resistant,NA,NA,NA,Resistant,Strain could not classified,Strain could not classified,NA -Acinetobacter baumannii ORAB01,,NA,NA,NA,Intermediate,NA,NA,NA,NA,NA,NA,NA,NA -Acinetobacter baumannii strain FDA-CDC-AR_0305,,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Susceptible -Acinetobacter baumannii strain FDA-CDC-AR_0306,,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Susceptible -Acinetobacter baumannii strain FDA-CDC-AR_0307,,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Resistant -Acinetobacter baumannii strain FDA-CDC-AR_0308,,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,Resistant
--- a/tool.sh Tue Jun 29 05:20:41 2021 +0000 +++ b/tool.sh Tue Jun 29 12:15:06 2021 +0000 @@ -4,9 +4,9 @@ --description 'MIC profile using CLSI MIC breakpoints' \ --requirement 'python' \ --example_command "clsi_profile_type2.py 'input.csv' 'clsi.csv' 'output.csv'" \ - --example_input input.csv \ - --example_input clsi.csv \ - --example_output output.csv \ + --example_input test-data/input.csv \ + --example_input test-data/clsi.csv \ + --example_output test-data/output.csv \ --test_case \ # --version_command 'python3 -V' \ # --help_from_command '' \
--- a/tool_asist.sh Tue Jun 29 05:20:41 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,13 +0,0 @@ -#!/bin/bash - -planemo tool_init --id 'asist' --name 'ASIST' --version 1.0.1 \ - --description 'Antimicrobial Susceptibility standards based phenotypes' \ - --requirement 'pandas' \ - --example_command "\"${__tool_directory__}/asist_dynamic.py\" 'asist_input.csv' 'asist_output.csv'" \ - --example_input test-data/asist_input.csv \ - --example_output test-data/asist_output.csv \ - --test_case \ - --version_command 'python -c "import pandas; print(pandas.__version__)"' \ - --doi 'https://ab-openlab.csir.res.in/asist' - -planemo lint asist.xml
--- a/tool_shed.sh Tue Jun 29 05:20:41 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -#!/bin/bash -# After reviewing .shed.yml, this configuration file and relevant shed artifacts can be quickly linted using the following command. -planemo shed_lint --tools -#planemo shed_create --shed_target toolshed -planemo shed_update --check_diff --shed_target toolshed