Mercurial > repos > recetox > aplcms_to_ramclustr_converter

diff aplcms_to_ramclustr_converter.xml @ 0:c6c0f6027e34 draft default tip

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"planemo upload for repository https://github.com/RECETOX/galaxytools/tools/aplcms_to_ramclustr_converter/ commit 4d2ac914c951166e386a94d8ebb8cb1becfac122"
author recetox
date Tue, 22 Mar 2022 16:06:28 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/aplcms_to_ramclustr_converter.xml	Tue Mar 22 16:06:28 2022 +0000
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+<tool id="aplcms_to_ramclustr_converter" name="apLCMS to RamClustR converter" version="0.1.0+galaxy1" python_template_version="3.5">
+    <description>converts apLCMS output to RamClustR input</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="creator"/>
+    <requirements>
+        <requirement type="package" version="1.1.5">pandas</requirement>
+        <requirement type="package" version="4.0.0">pyarrow</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        python $__tool_directory__/aplcms_to_ramclustr_converter.py --dataframe '${aplcms_dataframe}' '${out_file}'
+    ]]></command>
+    <inputs>
+        <param name="aplcms_dataframe" type="data" format="parquet" label="apLCMS Dataframe"/>
+    </inputs>
+    <outputs>
+        <data format="csv" name="out_file" label="Feature-by-sample ${aplcms_dataframe.name} table"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="aplcms_dataframe" value="input.parquet" ftype="parquet"/>
+            <output name="out_file" file="output.csv" ftype="csv"/>
+        </test>
+    </tests>
+    <help>
+        <![CDATA[
+        @HELP@
+        ]]>
+    </help>
+</tool>