# HG changeset patch
# User recetox
# Date 1713858152 0
# Node ID 7a4540275084f665c2bf15c7599bb89bf21fc450
# Parent  8a1893635ac0684bd082285afc4dbbfdf1a89598
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/isolib commit aea55301f6e688afb74190346d8fd0e9b0d9ed57

diff -r 8a1893635ac0 -r 7a4540275084 isolib.xml
--- a/isolib.xml	Tue Apr 23 06:39:20 2024 +0000
+++ b/isolib.xml	Tue Apr 23 07:42:32 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="isolib" name="isolib" version="1.0.0+galaxy0" profile="21.09">
+<tool id="isolib" name="isolib" version="1.0.0+galaxy1" profile="21.09">
     <description>create an isotopic pattern library for given compounds and adducts</description>
     <creator>
         <person
@@ -21,7 +21,7 @@
         <requirement type="package" version="2.6">r-envipat</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        Rscript ${__tool_directory__}/isolib.R '${input_file}' '${adducts}' '${threshold}' '${append_adduct}' '${isotope_library}'
+        Rscript '${__tool_directory__}/isolib.R' '${input_file}' '${ionization.adducts}' '${threshold}' '${append_adduct}' '${isotope_library}'
     ]]></command>
     <inputs>
         <param name="input_file" type="data" format="tabular" label="Table with input compounds"/>
@@ -69,4 +69,4 @@
         <citation type="doi">10.1021/acs.analchem.5b00941</citation>
         <citation type="doi">10.3390/metabo12020173</citation>
     </citations>
-</tool>
\ No newline at end of file
+</tool>