comparison macros.xml @ 5:28f7f2e60331 draft

planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/matchms commit f7bab98744e338dcdbdc9cf6f9de287632c76ea2

4:ba5e9bd05d5b

<macros>
    <token name="@TOOL_VERSION@">0.17.0</token>

    <xml name="creator">
        <creator>
            <person
                givenName="Helge"
                familyName="Hecht"
                url="https://github.com/hechth"
                identifier="0000-0001-6744-996X" />

            Downstream Tools
                The output is a JSON file containing serialized matchMS Scores object. The file can be processed by **matchMS output formatter**. 
        ]]>
    </token>

    <token name="@HELP_formatter@">
        <![CDATA[
            Usage
                This tool creates user friendly tables from the similarity scores produced by **matchMS similarity**.
                The tool can be operated on two modes based on (i) thresholds or (ii) top k matches.

                +----------+-----------+---------+--------+
                |   ...    | ...       | ...     | ...    |
                +----------+-----------+---------+--------+
        ]]>
    </token>
</macros>

5:28f7f2e60331

<macros>
    <token name="@TOOL_VERSION@">0.17.0</token>

    <xml name="creator">
        <creator>
            <yield/>
            <person
                givenName="Helge"
                familyName="Hecht"
                url="https://github.com/hechth"
                identifier="0000-0001-6744-996X" />

            Downstream Tools
                The output is a JSON file containing serialized matchMS Scores object. The file can be processed by **matchMS output formatter**. 
        ]]>
    </token>
    
    <token name="@HELP_matchms_networking@">
        <![CDATA[
        Documentation
        For documentation on the tool see https://github.com/matchms/matchms/blob/master/README.rst
        and https://matchms.readthedocs.io/en/latest/.
        
        **Upstream Tools**

        matchMS similarity
        
        **Downstream Tools**
        
        The output is a network-graph file that can be visualized using graph visualization software (e.g., Cytoscape).
        ]]>
    </token>
    
    <token name="@HELP_formatter@">
        <![CDATA[
            Usage
                This tool creates user friendly tables from the similarity scores produced by **matchMS similarity**.
                The tool can be operated on two modes based on (i) thresholds or (ii) top k matches.

                +----------+-----------+---------+--------+
                |   ...    | ...       | ...     | ...    |
                +----------+-----------+---------+--------+
        ]]>
    </token>
    
        <xml name="citations">
            <citations>
                <citation type="doi">10.5281/zenodo.7178586</citation>
                <citation type="doi">10.21105/joss.02411</citation>
            </citations>
        </xml>

</macros>