Mercurial > repos > recetox > matchms_formatter

comparison matchms_formatter.xml @ 18:86a45ba3d3f2 draft

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/matchms commit 0ea5c86ceabe9f24dd61b399127b0d19a0ae2657
author recetox
date Fri, 01 Dec 2023 11:16:22 +0000
parents b500419a2f1d
children f7718efde4d5
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17:b500419a2f1d 18:86a45ba3d3f2
1 <tool id="matchms_formatter" name="matchms scores formatter" version="@TOOL_VERSION@+galaxy1" profile="21.09"> 1 <tool id="matchms_formatter" name="matchms scores formatter" version="@TOOL_VERSION@+galaxy2" profile="21.09">
2 <description>reformat scores object of matchms to long format table</description> 2 <description>reformat scores object of matchms to long format table</description>
3 3
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 <import>help.xml</import> 6 <import>help.xml</import>
22 ]]></command> 22 ]]></command>
23 23
24 <environment_variables> 24 <environment_variables>
25 <environment_variable name="MPLCONFIGDIR">\$_GALAXY_JOB_TMP_DIR</environment_variable> 25 <environment_variable name="MPLCONFIGDIR">\$_GALAXY_JOB_TMP_DIR</environment_variable>
26 <environment_variable name="XDG_CACHE_HOME">\$_GALAXY_JOB_TMP_DIR</environment_variable> 26 <environment_variable name="XDG_CACHE_HOME">\$_GALAXY_JOB_TMP_DIR</environment_variable>
27 <environment_variable name="OPENBLAS_NUM_THREADS">1</environment_variable> 27 <environment_variable name="OPENBLAS_NUM_THREADS">4</environment_variable>
28 </environment_variables> 28 </environment_variables>
29 29
30 <configfiles> 30 <configfiles>
31 <configfile name="matchms_formatter_cli"> 31 <configfile name="matchms_formatter_cli">
32 python3 ${__tool_directory__}/formatter.py \ 32 python3 ${__tool_directory__}/formatter.py \