Mercurial > repos > recetox > matchms_formatter

diff matchms_formatter.xml @ 19:f7718efde4d5 draft

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/matchms commit 19994ff091195ec6c7df791985b2a04ed5aba329
author recetox
date Mon, 04 Dec 2023 13:40:45 +0000
parents 86a45ba3d3f2
children 402620029a7a
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--- a/matchms_formatter.xml	Fri Dec 01 11:16:22 2023 +0000
+++ b/matchms_formatter.xml	Mon Dec 04 13:40:45 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="matchms_formatter" name="matchms scores formatter" version="@TOOL_VERSION@+galaxy2" profile="21.09">
+<tool id="matchms_formatter" name="matchms scores formatter" version="@TOOL_VERSION@+galaxy3" profile="21.09">
     <description>reformat scores object of matchms to long format table</description>
 
     <macros>
@@ -13,8 +13,8 @@
 
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">matchms</requirement>
+        <requirement type="package" version="8.0.1">click</requirement>
         <requirement type="package" version="1.1.4">pandas</requirement>
-        <requirement type="package" version="8.0.1">click</requirement>
     </requirements>
 
     <command detect_errors="aggressive"><![CDATA[
@@ -25,6 +25,7 @@
         <environment_variable name="MPLCONFIGDIR">\$_GALAXY_JOB_TMP_DIR</environment_variable>
         <environment_variable name="XDG_CACHE_HOME">\$_GALAXY_JOB_TMP_DIR</environment_variable>
         <environment_variable name="OPENBLAS_NUM_THREADS">4</environment_variable>
+        <environment_variable name="RLIMIT_NPROC">4</environment_variable>        
     </environment_variables>
 
     <configfiles>