comparison matchms_metadata_merge.xml @ 3:caf007467c84 draft

planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/matchms commit 0ea5c86ceabe9f24dd61b399127b0d19a0ae2657

2:912af73eb6aa

<tool id="matchms_metadata_merge" name="matchms metadata merge" version="@TOOL_VERSION@+galaxy2" profile="21.09">
    <description>Merge metadata csv into MSP by a specified column</description>
    
    <macros>
        <import>macros.xml</import>
        <import>help.xml</import>

    <command detect_errors='aggressive'><![CDATA[
        python3 '${matchms_python_cli}'
    ]]></command>

    <environment_variables>
        <environment_variable name="OPENBLAS_NUM_THREADS">1</environment_variable>
    </environment_variables>

<configfiles>
<configfile name="matchms_python_cli">
import pandas

3:caf007467c84

<tool id="matchms_metadata_merge" name="matchms metadata merge" version="@TOOL_VERSION@+galaxy3" profile="21.09">
    <description>Merge metadata csv into MSP by a specified column</description>
    
    <macros>
        <import>macros.xml</import>
        <import>help.xml</import>

    <command detect_errors='aggressive'><![CDATA[
        python3 '${matchms_python_cli}'
    ]]></command>

    <environment_variables>
        <environment_variable name="OPENBLAS_NUM_THREADS">4</environment_variable>
    </environment_variables>

<configfiles>
<configfile name="matchms_python_cli">
import pandas