Mercurial > repos > recetox > mfassignr_histnoise

comparison macros.xml @ 4:3b09c6e3013b draft

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 4bd188e61f09431c0b7e73b35fb8ccf5ee7af6ac
author recetox
date Mon, 21 Oct 2024 09:06:10 +0000
parents e93401e2ad89
children 5dd25cf1ac0a
comparison
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3:e93401e2ad89 4:3b09c6e3013b
66 </xml> 66 </xml>
67 67
68 <xml name="snplot_param"> 68 <xml name="snplot_param">
69 <param name="input_file" type="data" format="tabular" label="Input data" 69 <param name="input_file" type="data" format="tabular" label="Input data"
70 help= "Input data frame, first column is mass, second column is intensity"/> 70 help= "Input data frame, first column is mass, second column is intensity"/>
71 <param name="cut" type="float" label="cut" value="0" 71 <expand macro="noise_threshold_params" />
72 help= "A numeric value of the intensity cut value being investigated"/>
73 <param name="mass" type="float" label="mass" value="300" 72 <param name="mass" type="float" label="mass" value="300"
74 help= "A numeric value setting a centerpoint to look at the mass spectrum"/> 73 help= "A numeric value setting a centerpoint to look at the mass spectrum"/>
75 <param name="window_x" type="float" label="window.x" value="0.5" 74 <param name="window_x" type="float" label="window.x" value="0.5"
76 help= "A numeric value setting the +/- range around the mass centerpoint, default is 0.5"/> 75 help= "A numeric value setting the +/- range around the mass centerpoint, default is 0.5"/>
77 <param name="window_y" type="float" label="window.y" value="10" 76 <param name="window_y" type="float" label="window.y" value="10"
138 </xml> 137 </xml>
139 138
140 <xml name="isofiltr_param"> 139 <xml name="isofiltr_param">
141 <param name="peaks" type="data" format="tabular" label="Input Peak Data" 140 <param name="peaks" type="data" format="tabular" label="Input Peak Data"
142 help="The input data frame containing abundance and peak mass."/> 141 help="The input data frame containing abundance and peak mass."/>
143 <param name="SN" type="float" value="0" label="Signal-to-Noise Ratio" 142 <expand macro="noise_threshold_params" />
144 help="Sets the noise cut for the data; peaks below this value will not be evaluated."/>
145 <param name="Carbrat" type="float" value="60" min="5" label="Maximum 13C/12C Ratio" 143 <param name="Carbrat" type="float" value="60" min="5" label="Maximum 13C/12C Ratio"
146 help="Sets the maximum allowed ratio for matching 13C isotopes."/> 144 help="Sets the maximum allowed ratio for matching 13C isotopes."/>
147 <param name="Sulfrat" type="float" value="30" label="Maximum 34S/32S Ratio" 145 <param name="Sulfrat" type="float" value="30" label="Maximum 34S/32S Ratio"
148 help="Sets the maximum allowed ratio for matching 34S isotopes."/> 146 help="Sets the maximum allowed ratio for matching 34S isotopes."/>
149 <param name="Sulferr" type="float" value="5" label="Maximum Error for 34S Matching (ppm)" 147 <param name="Sulferr" type="float" value="5" label="Maximum Error for 34S Matching (ppm)"