comparison macros.xml @ 6:9654573e6889 draft default tip

planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 7d98b78ae27b24ee581d40ff0b624d7ecb288030

5:5dd25cf1ac0a

<macros>
    <token name="@TOOL_VERSION@">1.1.1</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">r-mfassignr</requirement>
        </requirements>
    </xml>

              <param name="DeNovo" type="float" label="De novo cut point for the data" value="300" help= "Sets the de novo cut point for the data."/>  
          </section>
       </section>
    </xml>

    <xml name="findrecalseries_param">
        <param name="input_file" type="data" format="tabular" label="Input data"
               help= "Recalibration series, output from RecalList"/>
        <param name="global_min" type="float" label="Global min" value="0" min="0"
               help= "A lower bound of the instrument m/z range."/>
        <param name="global_max" type="float" label="Global max" value="1000" min="0"
               help= "A higher bound of the instrument m/z range."/>
        <param name="number_of_combinations" type="integer" label="Number of combinations"
               help= "Combinations of how many series should be computed." value="5"/>
        <param name="abundance_score_threshold" type="float" label="Abundance score threshold" value="100"
               help= "A threshold for filtering abundance score parameter. The series with higher values are better."/>
        <param name="peak_distance_threshold" type="float" label="Peak distance threshold" value="2"
               help= "A threshold for the peak distance parameter. The closer this value is to 1, the better."/>
        <param name="coverage_threshold" type="integer" label="How many % of the m/z range should be covered."
               help= "How many % of the m/z range should be covered." value="90"/>
        <param name="fill_series" type="boolean" truevalue="TRUE" falsevalue="FALSE" label="Whether to return top 10 unique series (TRUE) or series only from the best combination."
               help= "If TRUE, top 10 unique series will be returned, otherwise only the series from the best
               combination will be returned." value="false"/>
    </xml>

    <xml name="recal_param">
        <param name="input_file" type="data" format="tabular" label="Input data (Output from MFAssign)"
               help= "Input data frame, the output from MFAssign or MFAssignCHO"/>
       <param name="series" type="data" format="tabular" label="Calibration series (Output from RecalList)"
               help= "Calibration series (Output from RecalList). At maximum the first 10 rows are used."/>

6:9654573e6889

<macros>
    <token name="@TOOL_VERSION@">1.1.2</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">r-mfassignr</requirement>
        </requirements>
    </xml>

              <param name="DeNovo" type="float" label="De novo cut point for the data" value="300" help= "Sets the de novo cut point for the data."/>  
          </section>
       </section>
    </xml>

    <xml name="recal_param">
        <param name="input_file" type="data" format="tabular" label="Input data (Output from MFAssign)"
               help= "Input data frame, the output from MFAssign or MFAssignCHO"/>
       <param name="series" type="data" format="tabular" label="Calibration series (Output from RecalList)"
               help= "Calibration series (Output from RecalList). At maximum the first 10 rows are used."/>