Mercurial > repos > recetox > mfassignr_isofiltr

view macros.xml @ 0:c12a49b04ca0 draft

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 1ff446e70246c4f538a8636d2bcdad11d9d342d6
author recetox
date Wed, 07 Aug 2024 14:27:51 +0000
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children 079ae9aa6ed5
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<macros>
    <token name="@TOOL_VERSION@">1.0.3</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">r-mfassignr</requirement>
        </requirements>
    </xml>

    <xml name="refs">
        <xrefs>
               <xref type="bio.tools">mfassignr</xref>
        </xrefs>
    </xml>

    <xml name="creator">
        <creator>
            <person
                givenName="Zargham"
                familyName="Ahmad"
                url="https://github.com/zargham-ahmad"
                identifier="0000-0002-6096-224X" />
            <organization
                url="https://www.recetox.muni.cz/"
                email="GalaxyToolsDevelopmentandDeployment@space.muni.cz"
                name="RECETOX MUNI" />
        </creator>
    </xml>

    <xml name="isofiltr_param">
        <param name="peaks" type="data" format="tabular" label="Input Peak Data"
        help="The input data frame containing abundance and peak mass."/>
        <param name="SN" type="float" value="0" label="Signal-to-Noise Ratio"
        help="Sets the noise cut for the data; peaks below this value will not be evaluated."/>
        <param name="Carbrat" type="float" value="60" min="5" label="Maximum 13C/12C Ratio"
        help="Sets the maximum allowed ratio for matching 13C isotopes."/>
        <param name="Sulfrat" type="float" value="30" label="Maximum 34S/32S Ratio"
        help="Sets the maximum allowed ratio for matching 34S isotopes."/>
        <param name="Sulferr" type="float" value="5" label="Maximum Error for 34S Matching (ppm)"
        help="Sets the maximum allowed error (ppm) for 34S mass matching."/>
        <param name="Carberr" type="float" value="5" label="Maximum Error for 13C Matching (ppm)"
        help="Sets the maximum allowed error (ppm) for 13C mass matching."/>
    </xml>

    <xml name="citations">
        <citations>
            <citation type="doi">10.1016/j.envres.2020.110114</citation>
        </citations>        
    </xml>

</macros>