Mercurial > repos > recetox > mfassignr_recallist

changeset 4:8c72eb08f474 draft

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 4bd188e61f09431c0b7e73b35fb8ccf5ee7af6ac
author recetox
date Mon, 21 Oct 2024 09:06:04 +0000
parents 1104682fb7cc
children 4f671baab2fd
files macros.xml
diffstat 1 files changed, 2 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Mon Sep 16 09:06:47 2024 +0000
+++ b/macros.xml	Mon Oct 21 09:06:04 2024 +0000
@@ -68,8 +68,7 @@
     <xml name="snplot_param">
         <param name="input_file" type="data" format="tabular" label="Input data"
                help= "Input data frame, first column is mass, second column is intensity"/>
-        <param name="cut" type="float" label="cut" value="0"
-               help= "A numeric value of the intensity cut value being investigated"/>
+        <expand macro="noise_threshold_params" />
         <param name="mass" type="float" label="mass" value="300"
                help= "A numeric value setting a centerpoint to look at the mass spectrum"/>
         <param name="window_x" type="float" label="window.x" value="0.5"
@@ -140,8 +139,7 @@
     <xml name="isofiltr_param">
         <param name="peaks" type="data" format="tabular" label="Input Peak Data"
         help="The input data frame containing abundance and peak mass."/>
-        <param name="SN" type="float" value="0" label="Signal-to-Noise Ratio"
-        help="Sets the noise cut for the data; peaks below this value will not be evaluated."/>
+        <expand macro="noise_threshold_params" />
         <param name="Carbrat" type="float" value="60" min="5" label="Maximum 13C/12C Ratio"
         help="Sets the maximum allowed ratio for matching 13C isotopes."/>
         <param name="Sulfrat" type="float" value="30" label="Maximum 34S/32S Ratio"