comparison qcxms_prod_run.xml @ 1:bc099c440016 draft

planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/qcxms commit b33d814384657d9ff2357f86529e9cad49a6c2f9

0:bf836aaeca19

<tool id="qcxms_production_run" name="QCxMS production run" version="@TOOL_VERSION@+galaxy0" profile="21.05">
    <description>Production run to obtain a QCxMS simulated mass spectrum</description>
    
    <macros>
        <import>macros.xml</import>
    </macros>

    <expand macro="creator"/>
    <expand macro="requirements"/>

    <command detect_errors="exit_code"><![CDATA[
        python3 '${create_folder_structure}' &&
        find TMPQCXMS/*/ -type d | xargs -I {} -P ${GALAXY_SLOTS} sh -c 'cd {} && /qcxms_bin/qcxms --prod >> $log' &&
        /qcxms_bin/getres &&
        /plotms_bin/PlotMS.v.6.2.0/plotms &&
        sh ${__tool_directory__}/msp_out.sh
    ]]></command>

1:bc099c440016

<tool id="qcxms_production_run" name="QCxMS production run" version="@TOOL_VERSION@+galaxy1" profile="21.05">
    <description>Production run to obtain a QCxMS simulated mass spectrum</description>
    
    <macros>
        <import>macros.xml</import>
    </macros>

    <expand macro="creator"/>
    <expand macro="requirements"/>

    <command detect_errors="exit_code"><![CDATA[
        python3 '${create_folder_structure}' &&
        find TMPQCXMS/*/ -type d | xargs -I {} -P \${GALAXY_SLOTS:-1} sh -c 'cd {} && /qcxms_bin/qcxms --prod >> $log' &&
        /qcxms_bin/getres &&
        /plotms_bin/PlotMS.v.6.2.0/plotms &&
        sh ${__tool_directory__}/msp_out.sh
    ]]></command>