comparison test-data/lc-ramclustr-define-experiment.csv @ 0:42c2a25ff197 draft

planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1

0:42c2a25ff197

parameter,Value,Description
,,
Experimental Design,,
Experiment,experiment_lc,"Experiment name, no spaces."
Species,mus musculus,Genus species from which samples are derived.
Sample,serum,"Type of sample (e.g., serum, leaf)."
Contributer,recetox,Your or your PI's name.
platform,LC-MS,Either GC-MS or LC-MS.
,,
GC-MS,,
chrominst,fill,Model of LC/GC instrument.
msinst,fill,Model of MS instrument.
column,fill,Column description.
InletTemp,fill,Temperature of inlet.
TransferTemp,fill,Temperature of GC to MS transfer line.
mstype,fill,"Type of mass spectrometer (one of QQQ, TOF, QTOF, Orbi, Q)."
msmode,fill,Positive or negative ion mode.
ionization,fill,"Ionization (EI, AP, or CI)."
msscanrange,fill,Scan range used for acquisition.
scantime,fill,Time for each full scan spectrum (e.g. 0.2 seconds).
deriv,fill,"Derivitization (TMS, TBDMS, or None)."
MSlevs,fill,Number of levels of energy acquired - 1 typically.
,,
LC-MS,,
chrominst,UltiMateX 3000 BioRS System,Model of LC/GC instrument.
msinst,FSN04-10000,Model of MS instrument.
column,These columns enable analysis of ppm levels of amines without column priming,Column description.
solvA,H20,Solvent A composition.
solvB,CO2,Solvent B composition.
CE1,50,Collision energy of acquisition of MS data.
CE2,100,Collision energy of acquisition for MSe/idMSMS data (when applicable).
mstype,Q,"Type of mass spectrometer (one of QQQ, TOF, QTOF, Orbi, Q)."
msmode,negative,Positive or negative ion mode.
ionization,ESI,"Ionization (EI, AP, or CI)."
colgas,He,Gas used for collisional dissociation.
msscanrange,1000,Scan range used for acquisition.
conevol,12,Cone voltage used for acquisition.
MSlevs,1.0,Number of levels of energy acquired - 1 typically.