Mercurial > repos > recetox > recetox_aplcms_align_features

comparison help.xml @ 5:c44c73efd6e5 draft

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 724ecb1b81ebd8a67488b8a9397177b2ff0357db
author recetox
date Wed, 24 May 2023 14:49:03 +0000
parents abe783e0daca
children d5c638b72ce4
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4:a85b9670051c 5:c44c73efd6e5
108 <token name="@COMPUTE_CLUSTERS_HELP@"> 108 <token name="@COMPUTE_CLUSTERS_HELP@">
109 recetox-aplcms - compute clusters 109 recetox-aplcms - compute clusters
110 ================================= 110 =================================
111 111
112 Group features with `mz` and `rt` using tolerances within the tolerance into clusters, creating larger features from raw data points. 112 Group features with `mz` and `rt` using tolerances within the tolerance into clusters, creating larger features from raw data points.
113 Custom tolerances for `mz` and `rt` are computed based on the given parameters.
114 The tool takes a collection of all detected features and computes the clusters over a global feature table, adding the `sample_id` and `cluster` columns to the table. 113 The tool takes a collection of all detected features and computes the clusters over a global feature table, adding the `sample_id` and `cluster` columns to the table.
115 114
116 Example Output 115 Example Output
117 -------------- 116 --------------
118 117
131 130
132 <token name="@CORRECT_TIME_HELP@"> 131 <token name="@CORRECT_TIME_HELP@">
133 recetox-aplcms - correct time 132 recetox-aplcms - correct time
134 ============================= 133 =============================
135 134
136 Apply spline-based retention time correction to a feature table given the template table and the computed `mz` and `rt` tolerances. 135 Apply spline-based retention time correction to a feature table given the template table and the `mz` and `rt` tolerances.
137 136
138 Example Output 137 Example Output
139 -------------- 138 --------------
140 The output has the same format as `compute clusters` but the retention time values are corrected based on the template table. 139 The output has the same format as `compute clusters` but the retention time values are corrected based on the template table.
141 140