Mercurial > repos > recetox > recetox_aplcms_compute_clusters
comparison macros.xml @ 7:550667ce03f1 draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 97249a1af94ac5c387e1ede274dec5364f71cde9
| author | recetox |
|---|---|
| date | Wed, 11 Oct 2023 11:17:39 +0000 |
| parents | 149b9cc7499b |
| children | f3a18e020cdd |
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| 6:149b9cc7499b | 7:550667ce03f1 |
|---|---|
| 11 <edam_topics> | 11 <edam_topics> |
| 12 <edam_topic>topic_3172</edam_topic> | 12 <edam_topic>topic_3172</edam_topic> |
| 13 <edam_topic>topic_0091</edam_topic> | 13 <edam_topic>topic_0091</edam_topic> |
| 14 <edam_topic>topic_3520</edam_topic> | 14 <edam_topic>topic_3520</edam_topic> |
| 15 </edam_topics> | 15 </edam_topics> |
| 16 </xml> | |
| 17 | |
| 18 <xml name="refs"> | |
| 16 <xrefs> | 19 <xrefs> |
| 17 <xref type="bio.tools">recetox-aplcms</xref> | 20 <xref type="bio.tools">recetox-aplcms</xref> |
| 18 </xrefs> | 21 </xrefs> |
| 19 </xml> | 22 </xml> |
| 20 | 23 |
| 79 help="The lower limit of the ratio range between the left-standard deviation and the right-standard deviation of the bi-Gaussian function to fit the data." /> | 82 help="The lower limit of the ratio range between the left-standard deviation and the right-standard deviation of the bi-Gaussian function to fit the data." /> |
| 80 <param name="sigma_ratio_lim_max" type="float" optional="true" label="Maximal sigma ratio" | 83 <param name="sigma_ratio_lim_max" type="float" optional="true" label="Maximal sigma ratio" |
| 81 help="The upper limit of the ratio range between the left-standard deviation and the right-standard deviation of the bi-Gaussian function to fit the data." /> | 84 help="The upper limit of the ratio range between the left-standard deviation and the right-standard deviation of the bi-Gaussian function to fit the data." /> |
| 82 </section> | 85 </section> |
| 83 <conditional name="sd_cut"> | 86 <conditional name="sd_cut"> |
| 84 <param name="sd_cut_bounds" type="boolean" checked="true" truevalue="TRUE" falsevalue="FALSE" label="Standard deviations boundaries." | 87 <param name="sd_cut_bounds" type="select" label="Standard deviations boundaries." |
| 85 help="Limit the standard deviations by setting boundaries." /> | 88 help="Limit the standard deviations by setting boundaries."> |
| 89 <option value="FALSE">FALSE</option> | |
| 90 <option value="TRUE" selected="true">TRUE</option> | |
| 91 </param> | |
| 86 <when value="TRUE"> | 92 <when value="TRUE"> |
| 87 <param name="sd_cut_min" type="float" value="0.01" label="Minimal standard deviation" | 93 <param name="sd_cut_min" type="float" value="0.01" label="Minimal standard deviation" |
| 88 help="The minimum standard deviation - features with a standard deviation lower than this number are eliminated." /> | 94 help="The minimum standard deviation - features with a standard deviation lower than this number are eliminated." /> |
| 89 <param name="sd_cut_max" type="float" value="500" label="Maximal standard deviation" | 95 <param name="sd_cut_max" type="float" value="500" label="Maximal standard deviation" |
| 90 help="The maximum standard deviation - features with a standard deviation greater than this number are eliminated." /> | 96 help="The maximum standard deviation - features with a standard deviation greater than this number are eliminated." /> |
| 91 </when> | 97 </when> |
| 98 <when value="FALSE"></when> | |
| 92 </conditional> | 99 </conditional> |
| 93 <conditional name="peak_estim"> | 100 <conditional name="peak_estim"> |
| 94 <param name="peak_estim_method" type="select" display="radio" label="Peak estimation method" | 101 <param name="peak_estim_method" type="select" display="radio" label="Peak estimation method" |
| 95 help="The estimation method for parameters of the bi-Gaussian peak model. Two possible algorithms: moment and EM (expectation maximization)."> | 102 help="The estimation method for parameters of the bi-Gaussian peak model. Two possible algorithms: moment and EM (expectation maximization)."> |
| 96 <option value="moment">Moment</option> | 103 <option value="moment">Moment</option> |
| 98 </param> | 105 </param> |
| 99 <when value="moment"> | 106 <when value="moment"> |
| 100 <param name="moment_power" type="float" value="1" label="Moment power" | 107 <param name="moment_power" type="float" value="1" label="Moment power" |
| 101 help="The power parameter for data transformation when fitting the bi-Gaussian mixture model in an EIC." /> | 108 help="The power parameter for data transformation when fitting the bi-Gaussian mixture model in an EIC." /> |
| 102 </when> | 109 </when> |
| 110 <when value="EM"></when> | |
| 103 </conditional> | 111 </conditional> |
| 104 </section> | 112 </section> |
| 105 </xml> | 113 </xml> |
| 106 | 114 |
| 107 <xml name="tolerances"> | 115 <xml name="tolerances"> |