comparison recetox_aplcms_compute_clusters.xml @ 7:550667ce03f1 draft

planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 97249a1af94ac5c387e1ede274dec5364f71cde9

6:149b9cc7499b

<tool id="recetox_aplcms_compute_clusters" name="recetox-aplcms - compute clusters" version="@TOOL_VERSION@+galaxy2" profile="21.09">
    <description>compute clusters of mz and rt across samples and assign cluster IDs to individual features</description>
    <macros>
        <import>macros.xml</import>
        <import>help.xml</import>
    </macros>
    <edam_operations>
        <edam_operation>operation_2928</edam_operation>
    </edam_operations>
    <expand macro="annotation"/>
    <expand macro="creator"/>
    <expand macro="requirements"/>

    <command detect_errors="aggressive"><![CDATA[
        Rscript -e 'source("${__tool_directory__}/utils.R")' -e 'source("${run_script}")'

            <discover_datasets pattern="__designation__" directory="clustered" format="parquet" />
        </collection>
    </outputs>

    <tests>

    </tests>

    <help>
        <![CDATA[
            @COMPUTE_CLUSTERS_HELP@

7:550667ce03f1

<tool id="recetox_aplcms_compute_clusters" name="recetox-aplcms - compute clusters" version="@TOOL_VERSION@+galaxy3" profile="21.09">
    <description>compute clusters of mz and rt across samples and assign cluster IDs to individual features</description>
    <macros>
        <import>macros.xml</import>
        <import>help.xml</import>
    </macros>
    <expand macro="annotation"/>
    <edam_operations>
        <edam_operation>operation_2928</edam_operation>
    </edam_operations>
    <expand macro="refs"/>
    <expand macro="creator"/>
    <expand macro="requirements"/>

    <command detect_errors="aggressive"><![CDATA[
        Rscript -e 'source("${__tool_directory__}/utils.R")' -e 'source("${run_script}")'

            <discover_datasets pattern="__designation__" directory="clustered" format="parquet" />
        </collection>
    </outputs>

    <tests>
        <test expect_failure="true" />
    </tests>

    <help>
        <![CDATA[
            @COMPUTE_CLUSTERS_HELP@