Mercurial > repos > recetox > recetox_aplcms_compute_clusters
comparison utils.R @ 3:a054eae3123c draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 505c3374a3e1e9aa450fcb752f2b8f87558fedbb
author | recetox |
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date | Thu, 25 May 2023 09:14:38 +0000 |
parents | ce00e1d03c31 |
children | 15aae2bfa67d |
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2:ce00e1d03c31 | 3:a054eae3123c |
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39 return(features) | 39 return(features) |
40 } | 40 } |
41 | 41 |
42 save_parquet_collection <- function(feature_tables, sample_names, subdir) { | 42 save_parquet_collection <- function(feature_tables, sample_names, subdir) { |
43 dir.create(subdir) | 43 dir.create(subdir) |
44 for (i in seq_len(length(feature_tables))) { | 44 for (i in seq_len(length(table$feature_tables))) { |
45 filename <- file.path(subdir, paste0(subdir, "_", sample_names[i], ".parquet")) | 45 filename <- file.path(subdir, paste0(sample_names[i], ".parquet")) |
46 feature_table <- as.data.frame(feature_tables[[i]]) | 46 feature_table <- as.data.frame(table$feature_tables[[i]]) |
47 feature_table <- save_sample_name(feature_table, sample_names[i]) | 47 feature_table <- save_sample_name(feature_table, sample_names[i]) |
48 arrow::write_parquet(feature_table, filename) | 48 arrow::write_parquet(feature_table, filename) |
49 } | 49 } |
50 } | 50 } |
51 | 51 |