Mercurial > repos > recetox > recetox_aplcms_compute_clusters
changeset 4:15aae2bfa67d draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 775afc79d12e680bb26496a2626d1855db9cddc7
| author | recetox |
|---|---|
| date | Thu, 25 May 2023 12:08:49 +0000 |
| parents | a054eae3123c |
| children | 60a09c4fa7a0 |
| files | recetox_aplcms_compute_clusters.xml utils.R |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/recetox_aplcms_compute_clusters.xml Thu May 25 09:14:38 2023 +0000 +++ b/recetox_aplcms_compute_clusters.xml Thu May 25 12:08:49 2023 +0000 @@ -1,4 +1,4 @@ -<tool id="recetox_aplcms_compute_clusters" name="recetox-aplcms - compute clusters" version="@TOOL_VERSION@+galaxy0"> +<tool id="recetox_aplcms_compute_clusters" name="recetox-aplcms - compute clusters" version="@TOOL_VERSION@+galaxy1"> <description>compute clusters of mz and rt across samples and assign cluster IDs to individual features</description> <macros> <import>macros.xml</import>
--- a/utils.R Thu May 25 09:14:38 2023 +0000 +++ b/utils.R Thu May 25 12:08:49 2023 +0000 @@ -41,9 +41,9 @@ save_parquet_collection <- function(feature_tables, sample_names, subdir) { dir.create(subdir) - for (i in seq_len(length(table$feature_tables))) { + for (i in seq_len(length(feature_tables))) { filename <- file.path(subdir, paste0(sample_names[i], ".parquet")) - feature_table <- as.data.frame(table$feature_tables[[i]]) + feature_table <- as.data.frame(feature_tables[[i]]) feature_table <- save_sample_name(feature_table, sample_names[i]) arrow::write_parquet(feature_table, filename) }