Mercurial > repos > recetox > recetox_aplcms_compute_template
comparison macros.xml @ 7:e2dc815e1b2c draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 97249a1af94ac5c387e1ede274dec5364f71cde9
author | recetox |
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date | Wed, 11 Oct 2023 11:19:06 +0000 |
parents | 481d769e2f7a |
children | dfebc82ba1f0 |
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6:481d769e2f7a | 7:e2dc815e1b2c |
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11 <edam_topics> | 11 <edam_topics> |
12 <edam_topic>topic_3172</edam_topic> | 12 <edam_topic>topic_3172</edam_topic> |
13 <edam_topic>topic_0091</edam_topic> | 13 <edam_topic>topic_0091</edam_topic> |
14 <edam_topic>topic_3520</edam_topic> | 14 <edam_topic>topic_3520</edam_topic> |
15 </edam_topics> | 15 </edam_topics> |
16 </xml> | |
17 | |
18 <xml name="refs"> | |
16 <xrefs> | 19 <xrefs> |
17 <xref type="bio.tools">recetox-aplcms</xref> | 20 <xref type="bio.tools">recetox-aplcms</xref> |
18 </xrefs> | 21 </xrefs> |
19 </xml> | 22 </xml> |
20 | 23 |
79 help="The lower limit of the ratio range between the left-standard deviation and the right-standard deviation of the bi-Gaussian function to fit the data." /> | 82 help="The lower limit of the ratio range between the left-standard deviation and the right-standard deviation of the bi-Gaussian function to fit the data." /> |
80 <param name="sigma_ratio_lim_max" type="float" optional="true" label="Maximal sigma ratio" | 83 <param name="sigma_ratio_lim_max" type="float" optional="true" label="Maximal sigma ratio" |
81 help="The upper limit of the ratio range between the left-standard deviation and the right-standard deviation of the bi-Gaussian function to fit the data." /> | 84 help="The upper limit of the ratio range between the left-standard deviation and the right-standard deviation of the bi-Gaussian function to fit the data." /> |
82 </section> | 85 </section> |
83 <conditional name="sd_cut"> | 86 <conditional name="sd_cut"> |
84 <param name="sd_cut_bounds" type="boolean" checked="true" truevalue="TRUE" falsevalue="FALSE" label="Standard deviations boundaries." | 87 <param name="sd_cut_bounds" type="select" label="Standard deviations boundaries." |
85 help="Limit the standard deviations by setting boundaries." /> | 88 help="Limit the standard deviations by setting boundaries."> |
89 <option value="FALSE">FALSE</option> | |
90 <option value="TRUE" selected="true">TRUE</option> | |
91 </param> | |
86 <when value="TRUE"> | 92 <when value="TRUE"> |
87 <param name="sd_cut_min" type="float" value="0.01" label="Minimal standard deviation" | 93 <param name="sd_cut_min" type="float" value="0.01" label="Minimal standard deviation" |
88 help="The minimum standard deviation - features with a standard deviation lower than this number are eliminated." /> | 94 help="The minimum standard deviation - features with a standard deviation lower than this number are eliminated." /> |
89 <param name="sd_cut_max" type="float" value="500" label="Maximal standard deviation" | 95 <param name="sd_cut_max" type="float" value="500" label="Maximal standard deviation" |
90 help="The maximum standard deviation - features with a standard deviation greater than this number are eliminated." /> | 96 help="The maximum standard deviation - features with a standard deviation greater than this number are eliminated." /> |
91 </when> | 97 </when> |
98 <when value="FALSE"></when> | |
92 </conditional> | 99 </conditional> |
93 <conditional name="peak_estim"> | 100 <conditional name="peak_estim"> |
94 <param name="peak_estim_method" type="select" display="radio" label="Peak estimation method" | 101 <param name="peak_estim_method" type="select" display="radio" label="Peak estimation method" |
95 help="The estimation method for parameters of the bi-Gaussian peak model. Two possible algorithms: moment and EM (expectation maximization)."> | 102 help="The estimation method for parameters of the bi-Gaussian peak model. Two possible algorithms: moment and EM (expectation maximization)."> |
96 <option value="moment">Moment</option> | 103 <option value="moment">Moment</option> |
98 </param> | 105 </param> |
99 <when value="moment"> | 106 <when value="moment"> |
100 <param name="moment_power" type="float" value="1" label="Moment power" | 107 <param name="moment_power" type="float" value="1" label="Moment power" |
101 help="The power parameter for data transformation when fitting the bi-Gaussian mixture model in an EIC." /> | 108 help="The power parameter for data transformation when fitting the bi-Gaussian mixture model in an EIC." /> |
102 </when> | 109 </when> |
110 <when value="EM"></when> | |
103 </conditional> | 111 </conditional> |
104 </section> | 112 </section> |
105 </xml> | 113 </xml> |
106 | 114 |
107 <xml name="tolerances"> | 115 <xml name="tolerances"> |