Mercurial > repos > recetox > recetox_aplcms_compute_template
view recetox_aplcms_compute_template.xml @ 7:e2dc815e1b2c draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 97249a1af94ac5c387e1ede274dec5364f71cde9
author | recetox |
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date | Wed, 11 Oct 2023 11:19:06 +0000 |
parents | 51e37adf988f |
children | dfebc82ba1f0 |
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<tool id="recetox_aplcms_compute_template" name="recetox-aplcms - compute template" version="@TOOL_VERSION@+galaxy2" profile="21.09"> <description>compute retention time correction template feature table</description> <macros> <import>macros.xml</import> <import>help.xml</import> </macros> <expand macro="annotation"/> <edam_operations> <edam_operation>operation_3936</edam_operation> </edam_operations> <expand macro="refs"/> <expand macro="creator"/> <expand macro="requirements"/> <command detect_errors="aggressive"><![CDATA[ Rscript -e 'source("${__tool_directory__}/utils.R")' -e 'source("${run_script}")' ]]></command> <configfiles> <configfile name="run_script"><![CDATA[ #set filenames = str("', '").join([str($f) for $f in $files]) feature_tables <- load_parquet_collection(c('$filenames')) template_features <- compute_template(feature_tables) save_data_as_parquet_file(template_features, '$output_file') ]]></configfile> </configfiles> <inputs> <param name="files" type="data_collection" collection_type="list" format="parquet" label="Input data" help="Table containing clustered features." /> </inputs> <outputs> <data label="${tool.name} on ${on_string}" name="output_file" format="parquet" /> </outputs> <tests> <test expect_failure="true" /> </tests> <help> <![CDATA[ @COMPUTE_TEMPLATE_HELP@ @GENERAL_HELP@ ]]> </help> <expand macro="citations"/> </tool>