Mercurial > repos > recetox > recetox_aplcms_correct_time
diff recetox_aplcms_correct_time.xml @ 2:353b9d58d360 draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 724ecb1b81ebd8a67488b8a9397177b2ff0357db
author | recetox |
---|---|
date | Wed, 24 May 2023 14:49:35 +0000 |
parents | 7b0bf5d403ba |
children | 5f667da3804a |
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--- a/recetox_aplcms_correct_time.xml Mon Apr 03 14:56:27 2023 +0000 +++ b/recetox_aplcms_correct_time.xml Wed May 24 14:49:35 2023 +0000 @@ -20,13 +20,12 @@ } template_features <- load_data_from_parquet_file('$template') - tolerances <- load_data_from_parquet_file('$tolerances') corrected_table <- correct_time( this.feature = features_table, template_features = template_features, - mz_tol_relative = get_mz_tol(tolerances), - rt_tol_relative = get_rt_tol(tolerances) + mz_tol_relative = $mz_tol_relative_ppm * 1e-06, + rt_tol_relative = $rt_tol ) corrected_table <- save_sample_name(corrected_table, sample_name) @@ -39,8 +38,7 @@ help="Mass spectrometry clustered features table." /> <param label="Input template features table" name="template" type="data" format="parquet" help="Template features table." /> - <param label="Input tolerances values" name="tolerances" type="data" format="parquet" - help="Table containing tolerance values." /> + <expand macro="tolerances"/> </inputs> <outputs>