diff recetox_aplcms_correct_time.xml @ 9:9064aecc78a7 draft default tip

planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit b88eaca14b030fc0023989f3c83479e4975d172a

--- a/recetox_aplcms_correct_time.xml	Thu May 30 14:52:30 2024 +0000
+++ b/recetox_aplcms_correct_time.xml	Thu Aug 01 10:58:09 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="recetox_aplcms_correct_time" name="recetox-aplcms - correct time" version="@TOOL_VERSION@+galaxy3" profile="21.09">
+<tool id="recetox_aplcms_correct_time" name="recetox-aplcms - correct time" version="@TOOL_VERSION@+galaxy0" profile="21.09">
     <description>correct retention time across samples for peak alignment</description>
     <macros>
         <import>macros.xml</import>
@@ -28,9 +28,7 @@
 
               corrected_table <- correct_time(
                    this.feature = features_table,
-                   template_features = template_features,
-                   mz_tol_relative = $mz_tol_relative_ppm * 1e-06,
-                   rt_tol_relative = $rt_tol
+                   template_features = template_features
               )
 
               corrected_table <- save_sample_name(corrected_table, sample_name)
@@ -43,7 +41,6 @@
                help="Mass spectrometry clustered features table." />
         <param label="Input template features table" name="template" type="data" format="parquet"
                help="Template features table." />
-        <expand macro="tolerances"/>
     </inputs>
 
     <outputs>