Mercurial > repos > recetox > recetox_aplcms_generate_feature_table
comparison recetox_aplcms_generate_feature_table.xml @ 7:32b66fb6a6a0 draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 97249a1af94ac5c387e1ede274dec5364f71cde9
| author | recetox |
|---|---|
| date | Wed, 11 Oct 2023 11:17:54 +0000 |
| parents | e7305ba0dd38 |
| children |
comparison
equal
deleted
inserted
replaced
| 6:e7305ba0dd38 | 7:32b66fb6a6a0 |
|---|---|
| 1 <tool id="recetox_aplcms_generate_feature_table" name="recetox-aplcms - generate feature table" version="@TOOL_VERSION@+galaxy2" profile="21.09"> | 1 <tool id="recetox_aplcms_generate_feature_table" name="recetox-aplcms - generate feature table" version="@TOOL_VERSION@+galaxy3" profile="21.09"> |
| 2 <description>generate feature table from noise-removed HRMS profile data</description> | 2 <description>generate feature table from noise-removed HRMS profile data</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 <import>help.xml</import> | 5 <import>help.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="annotation"/> | |
| 7 <edam_operations> | 8 <edam_operations> |
| 8 <edam_operation>operation_3215</edam_operation> | 9 <edam_operation>operation_3215</edam_operation> |
| 9 <edam_operation>operation_3799</edam_operation> | 10 <edam_operation>operation_3799</edam_operation> |
| 10 </edam_operations> | 11 </edam_operations> |
| 11 <expand macro="annotation"/> | 12 <expand macro="refs"/> |
| 12 <expand macro="creator"/> | 13 <expand macro="creator"/> |
| 13 <expand macro="requirements"/> | 14 <expand macro="requirements"/> |
| 14 | 15 |
| 15 <command detect_errors="aggressive"><![CDATA[ | 16 <command detect_errors="aggressive"><![CDATA[ |
| 16 Rscript -e 'source("${__tool_directory__}/utils.R")' -e 'source("${run_script}")' | 17 Rscript -e 'source("${__tool_directory__}/utils.R")' -e 'source("${run_script}")' |
| 70 <outputs> | 71 <outputs> |
| 71 <data label="${($profile.element_identifier).rsplit('.',1)[0]}.parquet" name="output_file" format="parquet" /> | 72 <data label="${($profile.element_identifier).rsplit('.',1)[0]}.parquet" name="output_file" format="parquet" /> |
| 72 </outputs> | 73 </outputs> |
| 73 | 74 |
| 74 <tests> | 75 <tests> |
| 75 | 76 <test expect_failure="true" /> |
| 77 <test> | |
| 78 <param name="profile" value="remove_noise_docker.parquet" /> | |
| 79 <output name="output_file" file="peak_table_galaxy.parquet" /> | |
| 80 </test> | |
| 76 </tests> | 81 </tests> |
| 77 | 82 |
| 78 <help> | 83 <help> |
| 79 <![CDATA[ | 84 <![CDATA[ |
| 80 @GENERATE_FEATURE_TABLE_HELP@ | 85 @GENERATE_FEATURE_TABLE_HELP@ |