Mercurial > repos > recetox > recetox_aplcms_generate_feature_table
diff recetox_aplcms_generate_feature_table.xml @ 1:e8962c8340f4 draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 4254c6f6f05915ceab5af5d7040ac2c44a8364b4
| author | recetox |
|---|---|
| date | Mon, 03 Apr 2023 14:57:14 +0000 |
| parents | 2810c956ec39 |
| children | 477b5144a422 |
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--- a/recetox_aplcms_generate_feature_table.xml Mon Feb 13 10:26:41 2023 +0000 +++ b/recetox_aplcms_generate_feature_table.xml Mon Apr 03 14:57:14 2023 +0000 @@ -32,16 +32,20 @@ #else: max_bandwidth = NA, #end if - sd_cut = c($sd_cut_min, $sd_cut_max), - #if $shape.shape_model == "bi-Gaussian": - sigma_ratio_lim = c($shape.sigma_ratio_lim_min, $shape.sigma_ratio_lim_max), - #else: - sigma_ratio_lim = NA, + #if $advanced.sd_cut.sd_cut_bounds == "FALSE": + sd_cut = c($advanced.sd_cut.sd_cut_min, $advanced.sd_cut.sd_cut_max), + #else + sd_cut = c(0, Inf), #end if - shape_model = "$shape.shape_model", - peak_estim_method = "$peak_estim_method", - component_eliminate = $component_eliminate, - moment_power = $moment_power, + sigma_ratio_lim = determine_sigma_ratios($advanced.shape_model.sigma_ratio_lim_min, $advanced.shape_model.sigma_ratio_lim_max), + shape_model = "bi-Gaussian", + peak_estim_method = "$advanced.peak_estim.peak_estim_method", + component_eliminate = $advanced.component_eliminate, + #if $advanced.peak_estim.peak_estim_method == "moment": + moment_power = $advanced.peak_estim.moment_power, + #else + moment_power = 1, + #end if BIC_factor = $BIC_factor, do.plot = FALSE )