Mercurial > repos > recetox > recetox_aplcms_generate_feature_table
changeset 3:477b5144a422 draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 505c3374a3e1e9aa450fcb752f2b8f87558fedbb
| author | recetox |
|---|---|
| date | Thu, 25 May 2023 09:14:23 +0000 |
| parents | 73d8537dcbd6 |
| children | ebca18e223bf |
| files | recetox_aplcms_generate_feature_table.xml utils.R |
| diffstat | 2 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/recetox_aplcms_generate_feature_table.xml Wed May 24 14:48:31 2023 +0000 +++ b/recetox_aplcms_generate_feature_table.xml Thu May 25 09:14:23 2023 +0000 @@ -1,4 +1,4 @@ -<tool id="recetox_aplcms_generate_feature_table" name="recetox-aplcms - generate feature table" version="@TOOL_VERSION@+galaxy0"> +<tool id="recetox_aplcms_generate_feature_table" name="recetox-aplcms - generate feature table" version="@TOOL_VERSION@+galaxy1"> <description>generate feature table from noise-removed HRMS profile data</description> <macros> <import>macros.xml</import> @@ -63,7 +63,7 @@ </inputs> <outputs> - <data label="${tool.name} on ${on_string}" name="output_file" format="parquet" /> + <data label="${($profile.element_identifier).rsplit('.',1)[0]}.parquet" name="output_file" format="parquet" /> </outputs> <tests>
--- a/utils.R Wed May 24 14:48:31 2023 +0000 +++ b/utils.R Thu May 25 09:14:23 2023 +0000 @@ -41,9 +41,9 @@ save_parquet_collection <- function(feature_tables, sample_names, subdir) { dir.create(subdir) - for (i in seq_len(length(feature_tables))) { - filename <- file.path(subdir, paste0(subdir, "_", sample_names[i], ".parquet")) - feature_table <- as.data.frame(feature_tables[[i]]) + for (i in seq_len(length(table$feature_tables))) { + filename <- file.path(subdir, paste0(sample_names[i], ".parquet")) + feature_table <- as.data.frame(table$feature_tables[[i]]) feature_table <- save_sample_name(feature_table, sample_names[i]) arrow::write_parquet(feature_table, filename) }