Mercurial > repos > recetox > recetox_aplcms_hybrid
diff recetox_aplcms_hybrid.xml @ 1:867c737a7f10 draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit b3e0c34f12c9c38fb34bf48197974620d60b50c5
author | recetox |
---|---|
date | Thu, 26 May 2022 16:46:40 +0000 |
parents | 1633a2a34255 |
children | acd25e4fda77 |
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--- a/recetox_aplcms_hybrid.xml Tue Mar 22 16:10:17 2022 +0000 +++ b/recetox_aplcms_hybrid.xml Thu May 26 16:46:40 2022 +0000 @@ -59,7 +59,11 @@ <expand macro="inputs"> <expand macro="history_db"/> - <expand macro="noise_filtering"/> + <expand macro="noise_filtering"> + <param name="min_exp" type="integer" min="1" value="2" + label="min_exp" + help="If a feature is to be included in the final feature table, it must be present in at least this number of samples." /> + </expand> <expand macro="feature_detection"/> <expand macro="peak_alignment"/> <expand macro="weak_signal_recovery"/> @@ -67,8 +71,14 @@ </expand> <outputs> - <expand macro="unsupervised_outputs"/> - <data name="updated_known_table" format="parquet" label="${tool.name} updated_known_table on ${on_string}"/> + <expand macro="unsupervised_outputs"> + <collection name="extracted_features" type="list" label="${tool.name} extracted_features on ${on_string}"> + <discover_datasets pattern="__designation__" directory="extracted" format="parquet" /> + </collection > + <collection name="corrected_features" type="list" label="${tool.name} corrected_features on ${on_string}"> + <discover_datasets pattern="__designation__" directory="corrected" format="parquet" /> + </collection > + </expand> <data name="feature_known_table_pairing" format="tabular" label="${tool.name} feature_known_table_pairing on ${on_string}" hidden="true"/> </outputs>