comparison recetox_aplcms_recover_weaker_signals.xml @ 9:a9bb2ccc53de draft

planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 97249a1af94ac5c387e1ede274dec5364f71cde9

8:99d118321d5f

<tool id="recetox_aplcms_recover_weaker_signals" name="recetox-aplcms - recover weaker signals" version="@TOOL_VERSION@+galaxy2" profile="21.09">
    <description>recover weaker signals from raw data using an aligned feature table</description>
    <macros>
        <import>macros.xml</import>
        <import>help.xml</import>
    </macros>
    <edam_operations>
        <edam_operation>operation_3215</edam_operation>
        <edam_operation>operation_3799</edam_operation>
    </edam_operations>
    <expand macro="annotation"/>
    <expand macro="creator"/>
    <expand macro="requirements"/>

    <command detect_errors="aggressive"><![CDATA[
        python '${__tool_directory__}/mzml_id_getter.py' '$input_file';

    <outputs>
        <data label="${($input_file.element_identifier).rsplit('.',1)[0]}.parquet" name="output_file" format="parquet" />
    </outputs>

    <tests>

    </tests>

    <help>
        <![CDATA[
            @RECOVER_WEAKER_SIGNALS_HELP@

9:a9bb2ccc53de

<tool id="recetox_aplcms_recover_weaker_signals" name="recetox-aplcms - recover weaker signals" version="@TOOL_VERSION@+galaxy3" profile="21.09">
    <description>recover weaker signals from raw data using an aligned feature table</description>
    <macros>
        <import>macros.xml</import>
        <import>help.xml</import>
    </macros>
    <expand macro="annotation"/>
    <edam_operations>
        <edam_operation>operation_3215</edam_operation>
        <edam_operation>operation_3799</edam_operation>
    </edam_operations>
    <expand macro="refs"/>
    <expand macro="creator"/>
    <expand macro="requirements"/>

    <command detect_errors="aggressive"><![CDATA[
        python '${__tool_directory__}/mzml_id_getter.py' '$input_file';

    <outputs>
        <data label="${($input_file.element_identifier).rsplit('.',1)[0]}.parquet" name="output_file" format="parquet" />
    </outputs>

    <tests>
        <test expect_failure="true" />
    </tests>

    <help>
        <![CDATA[
            @RECOVER_WEAKER_SIGNALS_HELP@