comparison macros.xml @ 9:ffbabefbd2e2 draft

planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit b88eaca14b030fc0023989f3c83479e4975d172a

8:b5a1f35abd8a

<macros>
    <token name="@TOOL_VERSION@">0.12.0</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">r-recetox-aplcms</requirement>
            <requirement type="package" version="2.5.2">pymzml</requirement>
        </requirements>

               help="The m/z tolerance level for the grouping of data points. This value is expressed as the fraction of the m/z value.
               This value, multiplied by the m/z value, becomes the cutoff level.
               The recommended value is the machine's nominal accuracy level (e.g. for FTMS, it is 10)." />
        <param name="baseline_correct" type="float" value="0" label="Baseline correction [unit of signal intensity]"
               help="After grouping the observations, the highest intensity in each group is found. If the highest is lower than this value, the entire group will be deleted." />
        <param name="intensity_weighted" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="Weight intensity"
               help="Whether to weight the local density by signal intensities in initial peak detection." />
    </xml>

    <xml name="generate_feature_table_params">

9:ffbabefbd2e2

<macros>
    <token name="@TOOL_VERSION@">0.13.2</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">r-recetox-aplcms</requirement>
            <requirement type="package" version="2.5.2">pymzml</requirement>
        </requirements>

               help="The m/z tolerance level for the grouping of data points. This value is expressed as the fraction of the m/z value.
               This value, multiplied by the m/z value, becomes the cutoff level.
               The recommended value is the machine's nominal accuracy level (e.g. for FTMS, it is 10)." />
        <param name="baseline_correct" type="float" value="0" label="Baseline correction [unit of signal intensity]"
               help="After grouping the observations, the highest intensity in each group is found. If the highest is lower than this value, the entire group will be deleted." />
        <param name="grouping_threshold" type="float" min="0" value="Inf" label="Grouping Threshold [unit corresponds to the retention time]"
               help="Maximum empty space between section of the chromatogram for splitting EICs" />
        <param name="intensity_weighted" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="Weight intensity"
               help="Whether to weight the local density by signal intensities in initial peak detection." />
    </xml>

    <xml name="generate_feature_table_params">