Mercurial > repos > recetox > recetox_aplcms_remove_noise
changeset 3:e3acbc988e14 draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 505c3374a3e1e9aa450fcb752f2b8f87558fedbb
| author | recetox |
|---|---|
| date | Thu, 25 May 2023 09:15:08 +0000 |
| parents | caa39ec7a18b |
| children | 8fb5e458831f |
| files | recetox_aplcms_remove_noise.xml utils.R |
| diffstat | 2 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/recetox_aplcms_remove_noise.xml Wed May 24 14:49:19 2023 +0000 +++ b/recetox_aplcms_remove_noise.xml Thu May 25 09:15:08 2023 +0000 @@ -1,4 +1,4 @@ -<tool id="recetox_aplcms_remove_noise" name="recetox-aplcms - remove noise" version="@TOOL_VERSION@+galaxy0"> +<tool id="recetox_aplcms_remove_noise" name="recetox-aplcms - remove noise" version="@TOOL_VERSION@+galaxy1"> <description>filter noise and detect peaks in high resolution mass spectrometry (HRMS) profile data</description> <macros> <import>macros.xml</import> @@ -39,7 +39,7 @@ </inputs> <outputs> - <data label="${tool.name} on ${on_string}" name="output_file" format="parquet" /> + <data label="${($input_file.element_identifier).rsplit('.',1)[0]}.parquet" name="output_file" format="parquet" /> </outputs> <tests>
--- a/utils.R Wed May 24 14:49:19 2023 +0000 +++ b/utils.R Thu May 25 09:15:08 2023 +0000 @@ -41,9 +41,9 @@ save_parquet_collection <- function(feature_tables, sample_names, subdir) { dir.create(subdir) - for (i in seq_len(length(feature_tables))) { - filename <- file.path(subdir, paste0(subdir, "_", sample_names[i], ".parquet")) - feature_table <- as.data.frame(feature_tables[[i]]) + for (i in seq_len(length(table$feature_tables))) { + filename <- file.path(subdir, paste0(sample_names[i], ".parquet")) + feature_table <- as.data.frame(table$feature_tables[[i]]) feature_table <- save_sample_name(feature_table, sample_names[i]) arrow::write_parquet(feature_table, filename) }