Mercurial > repos > recetox > recetox_aplcms_two_step_hybrid

comparison recetox_aplcms_two_step_hybrid.xml @ 1:87b669bdb51a draft default tip

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 19de0924a65bc65cbbf7c1fc17e9b5348305f95c
author recetox
date Fri, 10 Jun 2022 10:15:47 +0000
parents c67f0eb6a909
children
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0:c67f0eb6a909 1:87b669bdb51a
1 <tool id="recetox_aplcms_two_step_hybrid" name="RECETOX apLCMS Two-Step Hybrid" version="@TOOL_VERSION@+galaxy0"> 1 <tool id="recetox_aplcms_two_step_hybrid" name="RECETOX apLCMS Two-Step Hybrid" version="@TOOL_VERSION@+galaxy0">
2 <description>generate a feature table from LC/MS spectra of multi-batch experiments</description> 2 <description>generate a feature table from LC/MS spectra of multi-batch experiments</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="creator"> 6 <expand macro="creator"/>
7 <person
8 givenName="Maksym"
9 familyName="Skoryk"
10 url="https://github.com/maximskorik"
11 identifier="0000-0003-2056-8018" />
12 </expand>
13 7
14 <expand macro="requirements"/> 8 <expand macro="requirements"/>
15 <command detect_errors="aggressive"><![CDATA[ 9 <command detect_errors="aggressive"><![CDATA[
16 sh ${symlink_inputs} && 10 sh ${symlink_inputs} &&
17 Rscript -e 'source("${__tool_directory__}/main.R")' -e 'source("${run_script}")' 11 Rscript -e 'source("${__tool_directory__}/main.R")' -e 'source("${run_script}")'
77 <expand macro="multibatch_processing"/> 71 <expand macro="multibatch_processing"/>
78 <expand macro="output_format"/> 72 <expand macro="output_format"/>
79 </expand> 73 </expand>
80 74
81 <outputs> 75 <outputs>
82 <expand macro="unsupervised_outputs"/> 76 <expand macro="unsupervised_outputs">
77 <data name="updated_known_table" format="parquet" label="${tool.name} updated_known_table on ${on_string}"/>
78 </expand>
83 </outputs> 79 </outputs>
84 80
85 <tests> 81 <tests>
86 <test> 82 <test>
87 <param name="known_table" value="known_table.parquet" ftype="parquet"/> 83 <param name="known_table" value="known_table.parquet" ftype="parquet"/>