comparison rmassbank.r @ 2:5a6bb93ec656 draft default tip

planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/rmassbank commit bc3445f7c41271b0062c7674108f57708d08dd28

1:c1a9c990d4b0

#############################################################
# Read arguments
args <- commandArgs(trailingOnly = TRUE)

stt <- args[1] #file with settings
cmp <- args[2] #csv file with compounds
md <- args[3] #mode
inf <- args[4] #folder with csv infolist
files <- (args[5:length(args)]) #one or multiple mzML files

print(paste0("Used settings file: ", stt))
print(paste0("Used compound list: ", cmp))
print(paste0("RMassBank pipeline will be run in mode: ", md))
print(paste0("Input files: ", files))

2:5a6bb93ec656

#############################################################
# Read arguments
args <- commandArgs(trailingOnly = TRUE)

stt <- args[1] # file with settings
cmp <- args[2] # csv file with compounds
md <- args[3] # mode
inf <- args[4] # folder with csv infolist
files <- (args[5:length(args)]) # one or multiple mzML files

print(paste0("Used settings file: ", stt))
print(paste0("Used compound list: ", cmp))
print(paste0("RMassBank pipeline will be run in mode: ", md))
print(paste0("Input files: ", files))