Mercurial > repos > recetox > rmassbank
diff addBabelPath.py @ 0:0b28816c1c2c draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/rmassbank commit 02414aa4c20f249c2069e5e3d587e3a8cda923a8
author | recetox |
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date | Thu, 18 May 2023 13:01:04 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/addBabelPath.py Thu May 18 13:01:04 2023 +0000 @@ -0,0 +1,15 @@ +import sys + +# Script that replaces OpenBabel path in settings file used within Galaxy (tools installed via conda)# +# python script.py /path/settings_file /babeldir/path + +fin = open(sys.argv[1], "r") +fout = open("mysettings_galaxy.ini", "wt") + +for line in fin: + if "babeldir:" in line and "#" not in line: + fout.write("babeldir: '" + sys.argv[2] + "'\n") + else: + fout.write(line) +fin.close() +fout.close()