Mercurial > repos > refinery-platform > package_qualimap_2_2
changeset 0:bcc7b19f86fa draft default tip
planemo upload for repository https://github.com/refinery-platform/package_qualimap_2_2 commit eeb90d937d8ed1acb8b5dc4eae0d5a88a7a63951-dirty
| author | refinery-platform |
|---|---|
| date | Mon, 30 Jul 2018 11:22:09 -0400 |
| parents | |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 32 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Jul 30 11:22:09 2018 -0400 @@ -0,0 +1,32 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="qualimap" version="2.2"> + <install version="1.0"> + <actions_group> + <actions> + <action type="download_by_url">https://depot.galaxyproject.org/software/qualimap/qualimap_2.2_src_all.zip</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions_group> + </install> + <readme> + <![CDATA[ + Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) + and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts. + + Supported types of experiments include: + Whole-genome sequencing + Whole-exome sequencing + RNA-seq (speical mode available) + ChIP-seq + http://qualimap.bioinfo.cipf.es + ]]> + </readme> + </package> +</tool_dependency> \ No newline at end of file