comparison irods_upload.py @ 3:d2be2eb8350f draft

"planemo upload commit b2a00d9c24285fef0fb131d1832ecf4c337e5038-dirty"

2:0641ea2f75b1

import errno
import os
import shutil
import sys
sys.path.append("/home/richard/galaxy/lib")
from json import dump, load, loads

from galaxy.datatypes import sniff
from galaxy.datatypes.registry import Registry
from galaxy.datatypes.upload_util import handle_upload, UploadProblemException
from galaxy.util import (
    bunch,

    if len(sys.argv) < 4:
        print('usage: upload.py <root> <datatypes_conf> <json paramfile> <output spec> ...', file=sys.stderr)
        sys.exit(1)

    output_paths = parse_outputs(sys.argv[4:])

    registry = Registry()
    registry.load_datatypes(root_dir=sys.argv[1], config=sys.argv[2])

3:d2be2eb8350f

import errno
import os
import shutil
import sys
import main
from json import dump, load, loads
global python_path
sys.path = python_path
from galaxy.datatypes import sniff
from galaxy.datatypes.registry import Registry
from galaxy.datatypes.upload_util import handle_upload, UploadProblemException
from galaxy.util import (
    bunch,

    if len(sys.argv) < 4:
        print('usage: upload.py <root> <datatypes_conf> <json paramfile> <output spec> ...', file=sys.stderr)
        sys.exit(1)

    sys.path.append(argv[5])
    output_paths = parse_outputs(sys.argv[4:])

    registry = Registry()
    registry.load_datatypes(root_dir=sys.argv[1], config=sys.argv[2])