Mercurial > repos > rhohensinner > galaxy_irods_interface

comparison tug_download.xml @ 4:84f685c067ad draft default tip

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"planemo upload commit b2a00d9c24285fef0fb131d1832ecf4c337e5038-dirty"
author rhohensinner
date Wed, 04 Aug 2021 12:01:55 +0000
parents d2be2eb8350f
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3:d2be2eb8350f 4:84f685c067ad
1 <tool id="irods_download" name="iRODS Download" version="0.3" workflow_compatible="false"> 1 <tool id="irods_download" name="iRODS Download" version="0.4" workflow_compatible="false">
2 <description>Download your files from iRODS into Galaxy</description> 2 <description>Download your files from iRODS into Galaxy</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.8.2">python-irodsclient</requirement> 4 <requirement type="package" version="0.8.2">python-irodsclient</requirement>
5 </requirements> 5 </requirements>
6 6
27 ##import glob 27 ##import glob
28 ##set $test = glob.glob("os.getcwd()" + "/**/irods_galaxy_registry.xml", recursive=True) 28 ##set $test = glob.glob("os.getcwd()" + "/**/irods_galaxy_registry.xml", recursive=True)
29 ##set params["reg_file"] 29 ##set params["reg_file"]
30 #set params["tool_type"] = "down" 30 #set params["tool_type"] = "down"
31 #set $params=json.dumps($params) 31 #set $params=json.dumps($params)
32 main.py '$params' 32 irods_main.py '$params'
33 </command> 33 </command>
34 34
35 <inputs> 35 <inputs>
36 <param name="custom_host" type="text" value="data.cyverse.tugraz.at" label="iRODS Host:" /> 36 <param name="custom_host" type="text" value="data.cyverse.tugraz.at" label="iRODS Host:" />
37 <param name="custom_port" type="text" value="1247" label="iRODS Port:" /> 37 <param name="custom_port" type="text" value="1247" label="iRODS Port:" />