Mercurial > repos > rhpvorderman > data_manager_select_index_by_path

annotate tool-data/bwameth_indexes.loc.sample @ 1:8495c49cd056 draft default tip

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planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9061997af3bc94f49653ffd42f10b973578e371d
author rhpvorderman
date Mon, 16 Jul 2018 10:58:36 -0400
parents 5f8d9309058b
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5f8d9309058b planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
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1 # This is a sample file distributed with Galaxy that is used to define a
5f8d9309058b planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
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2 # list of bwa-meth indices, using three columns tab separated:
5f8d9309058b planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
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3 #
5f8d9309058b planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
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4 # <unique_build_id> <dbkey> <display_name> <genome_fasta_file_path>
5f8d9309058b planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
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5 #
5f8d9309058b planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
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6 # An index can be created with the following command:
5f8d9309058b planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
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7 #
5f8d9309058b planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
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8 # bwameth.py index /some/path/genome.fa
5f8d9309058b planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
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9 #
5f8d9309058b planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
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10 # "/some/path/genome.fa" would then be the last column in the line
5f8d9309058b planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
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11 # If this were for the mm10 mouse genome, the resulting entry would look like:
5f8d9309058b planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
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12 #
5f8d9309058b planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
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13 #mm9 mm9 Mouse (mm9) /some/path/genome.fa
5f8d9309058b planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff changeset
14 #
5f8d9309058b planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
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15 #