annotate batched_lastz.xml @ 5:a68e128cdb1a draft

planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 0ea305da4599dd6dddda15cbbcf2a5f23c45f943
author richard-burhans
date Wed, 01 May 2024 19:09:34 +0000
parents eb62d63f4272
children 34d51e66256c
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103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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1 <tool id="batched_lastz" name="Batched Lastz" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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2 <description>: align batches of sequences</description>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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3 <macros>
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4 <import>macros.xml</import>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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5 </macros>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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6 <expand macro="requirements"/>
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7 <required_files>
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8 <include path="run_lastz_tarball.py"/>
007990f98551 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 3bbc9b941798f866a1d8b7af1e3c0444e5130fd9
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9 </required_files>
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10 <command detect_errors="exit_code"><![CDATA[
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11 python '$__tool_directory__/run_lastz_tarball.py'
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12 '--input=$input'
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13 '--output=$output'
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14 --parallel=\${GALAXY_SLOTS:-2}
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103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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15 ]]></command>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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16 <inputs>
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17 <param argument="--input" type="data" format="tgz" label="Tarball"/>
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103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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18 </inputs>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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19 <outputs>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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20 <data name="output" label="Output"/>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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21 </outputs>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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22 <help><![CDATA[
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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23 TODO: Fill in help.
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24 ]]></help>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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25 <expand macro="citations"/>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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26 </tool>