Mercurial > repos > richard-burhans > batched_lastz
annotate batched_lastz.xml @ 5:a68e128cdb1a draft
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 0ea305da4599dd6dddda15cbbcf2a5f23c45f943
author | richard-burhans |
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date | Wed, 01 May 2024 19:09:34 +0000 |
parents | eb62d63f4272 |
children | 34d51e66256c |
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103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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1 <tool id="batched_lastz" name="Batched Lastz" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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2 <description>: align batches of sequences</description> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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3 <macros> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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4 <import>macros.xml</import> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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5 </macros> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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6 <expand macro="requirements"/> |
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007990f98551
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 3bbc9b941798f866a1d8b7af1e3c0444e5130fd9
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7 <required_files> |
007990f98551
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 3bbc9b941798f866a1d8b7af1e3c0444e5130fd9
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8 <include path="run_lastz_tarball.py"/> |
007990f98551
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 3bbc9b941798f866a1d8b7af1e3c0444e5130fd9
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9 </required_files> |
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103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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10 <command detect_errors="exit_code"><![CDATA[ |
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007990f98551
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 3bbc9b941798f866a1d8b7af1e3c0444e5130fd9
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11 python '$__tool_directory__/run_lastz_tarball.py' |
007990f98551
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 3bbc9b941798f866a1d8b7af1e3c0444e5130fd9
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12 '--input=$input' |
007990f98551
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 3bbc9b941798f866a1d8b7af1e3c0444e5130fd9
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13 '--output=$output' |
007990f98551
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 3bbc9b941798f866a1d8b7af1e3c0444e5130fd9
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14 --parallel=\${GALAXY_SLOTS:-2} |
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103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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15 ]]></command> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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16 <inputs> |
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ad3554614aad
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit fc8b75c4bed19a7d2eb854ac0476f26c81698c15
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17 <param argument="--input" type="data" format="tgz" label="Tarball"/> |
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103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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18 </inputs> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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19 <outputs> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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20 <data name="output" label="Output"/> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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21 </outputs> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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22 <help><![CDATA[ |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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23 TODO: Fill in help. |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
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24 ]]></help> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
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25 <expand macro="citations"/> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
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26 </tool> |