comparison batched_lastz.xml @ 14:43e72105f473 draft default tip

planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 646cb397d5219aba8b2eb365bef61195789e1d81

13:1aee697ec0fc

        <param name="input" value="input.tgz" ftype="tgz"/>
        <output name="output" decompress="true" file="output.maf.gz" ftype="maf"/>
      </test>
    </tests>
    <help><![CDATA[
Batched LASTZ is a special version of LASTZ designed to process output of Galaxy's SegAlign tool. It outputs pairiwse alignments in a verietry of formats.

**Using this tool**

.. class:: warningmark

This tool is the second part of a two-step process for generation of paiwrise alignments. The output of this tool is alignments in a format that was specified in **Output Options** section of SegAlign tool.

**What it does**

SegAlign processes **Target** and **Query** sequences to identify highly similar regions where gapped extension will be performed to create actual alignments. The actual alignments are generated by **Batched LASTZ** that should be run on the output of this tool. 

The default output is a MAF alignment file. Other formats can be configured in *Output Options* section.  See LASTZ manual <https://lastz.github.io/lastz/#formats>`_ for description of possible formats.
    ]]></help>
    <expand macro="citations"/>
</tool>

14:43e72105f473

        <param name="input" value="input.tgz" ftype="tgz"/>
        <output name="output" decompress="true" file="output.maf.gz" ftype="maf"/>
      </test>
    </tests>
    <help><![CDATA[
Batched LASTZ is a special version of LASTZ designed to process output of Galaxy's KegAlign tool. It outputs pairiwse alignments in a verietry of formats.

**Using this tool**

.. class:: warningmark

This tool is the second part of a two-step process for generation of paiwrise alignments. The output of this tool is alignments in a format that was specified in **Output Options** section of KegAlign tool.

**What it does**

KegAlign processes **Target** and **Query** sequences to identify highly similar regions where gapped extension will be performed to create actual alignments. The actual alignments are generated by **Batched LASTZ** that should be run on the output of this tool. 

The default output is a MAF alignment file. Other formats can be configured in *Output Options* section.  See LASTZ manual <https://lastz.github.io/lastz/#formats>`_ for description of possible formats.
    ]]></help>
    <expand macro="citations"/>
</tool>